Wall clock time and date at job start Tue Mar 31 2020 23:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.55411 * 2 1 4 4 C 1.53304 * 109.50943 * 239.87631 * 2 1 3 5 5 N 1.47161 * 108.38058 * 187.77528 * 4 2 1 6 6 S 1.65595 * 120.97890 * 230.55615 * 5 4 2 7 7 O 1.42105 * 106.40435 * 23.51798 * 6 5 4 8 8 O 1.42101 * 106.40424 * 156.43788 * 6 5 4 9 9 C 1.76203 * 107.21865 * 269.97927 * 6 5 4 10 10 C 1.38650 * 119.87669 * 90.00018 * 9 6 5 11 11 C 1.38616 * 120.50416 * 179.97438 * 10 9 6 12 12 C 1.37641 * 120.24357 * 359.97438 * 11 10 9 13 13 C 1.40694 * 119.74635 * 0.02562 * 12 11 10 14 14 C 1.41394 * 120.24311 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00029 * 204.38992 * 14 13 12 16 16 C 1.39937 * 120.00178 * 24.39123 * 14 13 12 17 17 N 1.30825 * 120.00185 * 17.86554 * 16 14 13 18 18 Si 1.86806 * 120.00142 * 197.87231 * 16 14 13 19 19 H 1.48498 * 109.46796 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47404 * 119.99812 * 18 16 14 21 21 H 1.48499 * 109.46953 * 239.99803 * 18 16 14 22 22 C 1.37595 * 119.87450 * 269.72495 * 9 6 5 23 23 C 1.47147 * 118.03528 * 50.53588 * 5 4 2 24 24 C 1.53302 * 108.38610 * 309.46186 * 23 5 4 25 25 C 1.52997 * 109.51062 * 172.22992 * 24 23 5 26 26 C 1.53000 * 109.50992 * 292.37842 * 24 23 5 27 27 O 1.42959 * 109.51187 * 120.13239 * 2 1 3 28 28 H 1.08997 * 109.47087 * 299.87118 * 1 2 3 29 29 H 1.09003 * 109.47397 * 59.86833 * 1 2 3 30 30 H 1.09000 * 109.47428 * 179.87157 * 1 2 3 31 31 H 1.08995 * 109.68344 * 307.49517 * 4 2 1 32 32 H 1.08998 * 109.68281 * 68.01833 * 4 2 1 33 33 H 1.08008 * 119.74938 * 0.02562 * 10 9 6 34 34 H 1.07995 * 119.87939 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.12428 * 180.02562 * 12 11 10 36 36 H 0.96994 * 120.00036 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.12812 * 0.02562 * 22 9 6 38 38 H 1.08998 * 109.68193 * 189.74077 * 23 5 4 39 39 H 1.08995 * 109.68510 * 69.18980 * 23 5 4 40 40 H 1.08999 * 109.47609 * 59.99822 * 25 24 23 41 41 H 1.09001 * 109.46863 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47014 * 299.99882 * 25 24 23 43 43 H 1.09000 * 109.47231 * 60.00529 * 26 24 23 44 44 H 1.09002 * 109.46701 * 179.97438 * 26 24 23 45 45 H 1.08992 * 109.47935 * 299.99863 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7252 -1.2499 5 7 3.5011 -0.8762 -1.1337 6 16 4.5064 -0.4181 -2.3673 7 8 3.7945 0.5492 -3.1268 8 8 5.7744 -0.1642 -1.7784 9 6 4.7163 -1.8182 -3.4163 10 6 3.8462 -2.0238 -4.4761 11 6 3.9996 -3.1205 -5.3098 12 6 5.0203 -4.0183 -5.0936 13 6 5.9091 -3.8198 -4.0212 14 6 6.9609 -4.7358 -3.7891 15 1 7.3851 -4.8319 -2.8005 16 6 7.4524 -5.5179 -4.8403 17 7 7.2067 -5.1774 -6.0794 18 14 8.4592 -7.0483 -4.4744 19 1 8.5943 -7.2121 -3.0047 20 1 7.7772 -8.2377 -5.0449 21 1 9.8069 -6.9113 -5.0828 22 6 5.7465 -2.7003 -3.1841 23 6 4.0405 -1.4459 0.1112 24 6 3.4312 -0.6856 1.2947 25 6 3.8212 -1.3779 2.6022 26 6 3.9531 0.7526 1.3014 27 8 2.0074 -0.6764 1.1654 28 1 -0.3633 0.5118 0.8911 29 1 -0.3634 0.5159 -0.8888 30 1 -0.3634 -1.0276 -0.0023 31 1 1.5757 -1.7078 -1.3210 32 1 1.8024 -0.1401 -2.1378 33 1 3.0433 -1.3236 -4.6539 34 1 3.3164 -3.2706 -6.1326 35 1 5.1382 -4.8719 -5.7446 36 1 7.5471 -5.7198 -6.8079 37 1 6.4255 -2.5360 -2.3605 38 1 5.1251 -1.3378 0.1247 39 1 3.7756 -2.5011 0.1771 40 1 4.9069 -1.3885 2.6979 41 1 3.3872 -0.8370 3.4432 42 1 3.4469 -2.4015 2.5969 43 1 3.6725 1.2453 0.3704 44 1 3.5190 1.2927 2.1428 45 1 5.0389 0.7448 1.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:36 Heat of formation + Delta-G solvation = -103.923404 kcal Electronic energy + Delta-G solvation = -28602.012690 eV Core-core repulsion = 24711.056567 eV Total energy + Delta-G solvation = -3890.956123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.98103 -37.66450 -36.82380 -35.38103 -34.74669 -34.44878 -33.87073 -30.69614 -30.10677 -29.81706 -27.55064 -27.04300 -25.51134 -24.86834 -21.98737 -21.87579 -21.01218 -19.68952 -18.76775 -17.99159 -17.19489 -16.77792 -16.00852 -15.89988 -15.32240 -15.10848 -14.79197 -14.63676 -14.49744 -14.32913 -13.51604 -13.38875 -13.30027 -12.79766 -12.62720 -12.50621 -12.32954 -12.17423 -12.09722 -11.98129 -11.94727 -11.79602 -11.64163 -11.51185 -11.44136 -11.39380 -11.31803 -11.11067 -11.06697 -10.90873 -10.60836 -10.28898 -10.11534 -9.78492 -9.61167 -9.37694 -8.63433 -8.05663 -7.73215 -6.94670 -4.56047 0.88223 2.16137 2.60024 2.98733 3.02020 3.05137 3.35198 3.54398 3.81103 4.19788 4.38068 4.49174 4.69050 4.77385 4.86177 4.96172 4.99386 5.15506 5.25477 5.32232 5.38965 5.47314 5.52088 5.64625 5.66195 5.68269 5.77580 5.85081 5.90079 5.96335 5.97586 6.01813 6.13785 6.17862 6.24381 6.54708 6.62132 6.73805 6.88223 7.02107 7.19036 7.20012 7.35089 7.69532 7.77685 7.91472 8.37484 8.64501 8.69096 10.00962 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016045 B = 0.003563 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.661809 B = 7857.382733 C = 8526.937378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.066 0.934 4 C 0.091 3.909 5 N -1.001 6.001 6 S 2.684 3.316 7 O -0.972 6.972 8 O -0.966 6.966 9 C -0.631 4.631 10 C -0.148 4.148 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.092 3.908 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.912 3.088 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.127 4.127 23 C 0.097 3.903 24 C 0.104 3.896 25 C -0.136 4.136 26 C -0.180 4.180 27 O -0.368 6.368 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.283 0.717 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 5.233 11.511 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.035 4.035 5 N -0.838 5.838 6 S 2.783 3.217 7 O -0.963 6.963 8 O -0.957 6.957 9 C -0.723 4.723 10 C -0.169 4.169 11 C -0.140 4.140 12 C -0.137 4.137 13 C 0.088 3.912 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.736 3.264 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.148 4.148 23 C -0.029 4.029 24 C 0.063 3.937 25 C -0.194 4.194 26 C -0.237 4.237 27 O -0.288 6.288 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.765 5.941 11.304 15.488 hybrid contribution 0.605 -1.347 -0.644 1.611 sum -8.160 4.593 10.660 14.188 Atomic orbital electron populations 1.21732 0.92458 1.03205 1.02665 1.22427 0.95060 0.95807 0.85237 0.91578 1.22140 0.79728 1.02035 0.99578 1.57869 1.16539 1.80010 1.29377 1.01871 0.72486 0.74753 0.72628 1.93495 1.73826 1.58423 1.70507 1.93513 1.40102 1.84757 1.77294 1.29770 1.07354 1.20916 1.14301 1.20067 1.00107 0.99727 0.96987 1.20815 0.98723 0.95820 0.98651 1.21653 0.93233 0.99194 0.99642 1.17684 0.91940 0.90479 0.91075 1.19635 1.15182 1.17462 0.96662 0.89882 1.25944 0.95697 0.98349 0.94353 1.69787 1.36849 1.35300 0.99872 0.86200 0.79326 0.80714 0.80201 1.18208 1.19583 1.19814 1.20732 0.97163 0.94358 1.02535 1.22137 0.99908 0.98019 0.82815 1.21787 0.81428 0.95210 0.95232 1.21730 1.01785 1.01037 0.94856 1.22417 1.02484 0.96376 1.02435 1.87947 1.20421 1.77292 1.43090 0.91656 0.90731 0.91529 0.90505 0.88075 0.87711 0.88326 0.85688 0.90566 0.87134 0.87867 0.90399 0.90612 0.91575 0.91466 0.92242 0.91685 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.57 37.15 0.36 -0.92 16 2 C 0.07 0.86 3.01 -26.58 -0.08 0.78 16 3 H 0.07 0.77 6.25 -51.93 -0.32 0.45 16 4 C 0.09 1.20 6.00 -3.52 -0.02 1.18 16 5 N -1.00 -15.43 2.86 -113.06 -0.32 -15.75 16 6 S 2.68 51.53 5.74 -107.50 -0.62 50.92 16 7 O -0.97 -19.87 15.89 -57.17 -0.91 -20.78 16 8 O -0.97 -20.21 15.88 -57.17 -0.91 -21.12 16 9 C -0.63 -13.99 5.97 -39.66 -0.24 -14.22 16 10 C -0.15 -3.24 9.53 -39.29 -0.37 -3.61 16 11 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 12 C -0.12 -2.93 8.70 -38.87 -0.34 -3.26 16 13 C 0.09 2.37 5.58 -106.83 -0.60 1.77 16 14 C -0.46 -11.75 9.05 -37.75 -0.34 -12.09 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 16 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 18 Si 0.91 17.92 29.60 -169.99 -5.03 12.88 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 C -0.13 -3.05 9.26 -38.87 -0.36 -3.41 16 23 C 0.10 1.34 5.38 -3.53 -0.02 1.32 16 24 C 0.10 1.25 1.11 -90.47 -0.10 1.15 16 25 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 26 C -0.18 -2.09 8.10 37.16 0.30 -1.79 16 27 O -0.37 -4.62 9.87 -35.23 -0.35 -4.97 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.31 6.95 -51.93 -0.36 0.95 16 33 H 0.10 2.06 7.60 -52.48 -0.40 1.66 16 34 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.13 3.16 6.15 -52.49 -0.32 2.83 16 36 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 37 H 0.11 2.53 7.60 -52.48 -0.40 2.14 16 38 H 0.10 1.44 6.94 -51.93 -0.36 1.08 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.76 6.11 -51.93 -0.32 0.44 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -30.15 370.64 -10.59 -40.74 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.68 Total: 7.11 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: -1.97 Total: -35.49 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.29 Total: -34.88 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -2.16 Total: -46.87 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 51.53 SS G_CDS: -0.62 Total: 50.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.15 -10.59 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.182 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds