Wall clock time and date at job start Tue Mar 31 2020 23:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50969 * 2 1 4 4 C 1.53710 * 109.44255 * 120.28101 * 2 1 3 5 5 N 1.47149 * 108.16345 * 172.37498 * 4 2 1 6 6 S 1.65601 * 120.98265 * 129.43412 * 5 4 2 7 7 O 1.42099 * 106.40147 * 156.18229 * 6 5 4 8 8 O 1.42089 * 106.40336 * 23.25882 * 6 5 4 9 9 C 1.76201 * 107.21693 * 269.71558 * 6 5 4 10 10 C 1.38662 * 119.87301 * 90.00129 * 9 6 5 11 11 C 1.38610 * 120.50107 * 180.02562 * 10 9 6 12 12 C 1.37631 * 120.25110 * 359.97438 * 11 10 9 13 13 C 1.40697 * 119.74351 * 0.02562 * 12 11 10 14 14 C 1.41395 * 120.24697 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00200 * 150.22353 * 14 13 12 16 16 C 1.39942 * 119.99829 * 330.22936 * 14 13 12 17 17 N 1.30827 * 120.00293 * 161.74155 * 16 14 13 18 18 Si 1.86801 * 120.00033 * 341.74104 * 16 14 13 19 19 H 1.48497 * 109.47291 * 95.41779 * 18 16 14 20 20 H 1.48508 * 109.46877 * 215.41691 * 18 16 14 21 21 H 1.48496 * 109.47223 * 335.41170 * 18 16 14 22 22 C 1.37590 * 119.88078 * 270.02260 * 9 6 5 23 23 C 1.47158 * 118.03495 * 309.16104 * 5 4 2 24 24 C 1.53291 * 108.38460 * 50.78438 * 23 5 4 25 25 C 1.53008 * 109.51372 * 67.62162 * 24 23 5 26 26 C 1.53002 * 109.51454 * 187.77445 * 24 23 5 27 27 O 1.42952 * 109.51256 * 239.89516 * 2 1 3 28 28 H 1.08995 * 109.47096 * 180.10483 * 1 2 3 29 29 H 1.08999 * 109.47034 * 300.10920 * 1 2 3 30 30 H 1.09004 * 109.46809 * 60.10181 * 1 2 3 31 31 H 1.09000 * 109.83778 * 52.69230 * 4 2 1 32 32 H 1.09005 * 109.75072 * 292.00244 * 4 2 1 33 33 H 1.08000 * 119.74590 * 359.97438 * 10 9 6 34 34 H 1.08008 * 119.87352 * 179.72543 * 11 10 9 35 35 H 1.08000 * 120.13407 * 180.02562 * 12 11 10 36 36 H 0.96995 * 120.00543 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.12773 * 359.97438 * 22 9 6 38 38 H 1.08994 * 109.68185 * 170.50463 * 23 5 4 39 39 H 1.09002 * 109.68006 * 291.06225 * 23 5 4 40 40 H 1.08997 * 109.46894 * 60.00043 * 25 24 23 41 41 H 1.08995 * 109.47020 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47024 * 299.99925 * 25 24 23 43 43 H 1.08997 * 109.46917 * 59.99956 * 26 24 23 44 44 H 1.08999 * 109.47086 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46698 * 300.00104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7309 1.2517 5 7 3.5011 -0.8766 1.1333 6 16 4.5063 -0.4200 2.3676 7 8 5.7049 -1.1659 2.2058 8 8 3.7251 -0.4522 3.5541 9 6 4.9309 1.2685 2.0970 10 6 4.1449 2.2738 2.6396 11 6 4.4665 3.6064 2.4344 12 6 5.5724 3.9459 1.6887 13 6 6.3772 2.9343 1.1333 14 6 7.5154 3.2711 0.3650 15 1 8.3673 2.6075 0.3423 16 6 7.5382 4.4642 -0.3659 17 7 8.6777 4.9570 -0.7785 18 14 5.9415 5.3534 -0.7524 19 1 5.7022 6.4067 0.2665 20 1 6.0353 5.9773 -2.0968 21 1 4.8176 4.3829 -0.7346 22 6 6.0408 1.5847 1.3478 23 6 4.0407 -1.4457 -0.1119 24 6 3.4313 -0.6850 -1.2950 25 6 3.9531 0.7534 -1.3010 26 6 3.8213 -1.3767 -2.6028 27 8 2.0075 -0.6758 -1.1657 28 1 -0.3633 -1.0276 0.0019 29 1 -0.3633 0.5155 0.8890 30 1 -0.3633 0.5123 -0.8909 31 1 1.5788 -1.7153 1.3203 32 1 1.8019 -0.1491 2.1418 33 1 3.2751 2.0165 3.2257 34 1 3.8447 4.3813 2.8580 35 1 5.8214 4.9848 1.5304 36 1 8.6935 5.7838 -1.2854 37 1 6.6517 0.8001 0.9262 38 1 5.1252 -1.3375 -0.1253 39 1 3.7757 -2.5009 -0.1782 40 1 5.0390 0.7455 -1.3951 41 1 3.5191 1.2938 -2.1422 42 1 3.6726 1.2455 -0.3698 43 1 3.4470 -2.4003 -2.5980 44 1 3.3881 -0.8349 -3.4436 45 1 4.9071 -1.3872 -2.6985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:40 Heat of formation + Delta-G solvation = -101.147508 kcal Electronic energy + Delta-G solvation = -29593.452489 eV Core-core repulsion = 25702.616738 eV Total energy + Delta-G solvation = -3890.835751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.92279 -37.99493 -36.93469 -35.49513 -34.76556 -34.37403 -33.84979 -30.79835 -30.61815 -30.23780 -27.32286 -27.05611 -25.44710 -24.88211 -22.43796 -21.92515 -20.97139 -19.59741 -18.85059 -18.10697 -17.28660 -16.73831 -16.40207 -15.92429 -15.50068 -15.10482 -14.93313 -14.67185 -14.47825 -14.29599 -13.87351 -13.29622 -13.21163 -12.95515 -12.72961 -12.44928 -12.34409 -12.28430 -12.10919 -12.04228 -11.89469 -11.82549 -11.79645 -11.74922 -11.59679 -11.47052 -11.36473 -11.09348 -11.01325 -10.90204 -10.44462 -10.28266 -10.10769 -9.99831 -9.75945 -9.34681 -8.66211 -8.33014 -7.94523 -7.14942 -4.70631 0.75483 1.83224 2.34958 2.92830 3.04470 3.10734 3.22100 3.61490 3.77480 4.06233 4.21702 4.48332 4.71636 4.75119 4.95795 4.98634 5.03197 5.09891 5.20958 5.26773 5.33791 5.50281 5.61985 5.65609 5.71937 5.73921 5.80350 5.83719 5.93767 5.95911 6.02637 6.05011 6.05616 6.13577 6.30144 6.37303 6.41903 6.50823 6.63683 6.79965 7.01481 7.12442 7.27816 7.32490 7.55524 7.70664 8.12334 8.35965 8.55021 9.86878 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.005286 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.791645 B = 5295.568820 C = 5945.300459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.072 0.928 4 C 0.097 3.903 5 N -1.002 6.002 6 S 2.684 3.316 7 O -0.964 6.964 8 O -0.968 6.968 9 C -0.624 4.624 10 C -0.158 4.158 11 C -0.090 4.090 12 C -0.198 4.198 13 C 0.076 3.924 14 C -0.442 4.442 15 H 0.096 0.904 16 C 0.084 3.916 17 N -0.798 5.798 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.243 1.243 22 C -0.100 4.100 23 C 0.102 3.898 24 C 0.101 3.899 25 C -0.184 4.184 26 C -0.136 4.136 27 O -0.368 6.368 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.288 0.712 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.694 -7.526 -2.751 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.090 0.910 4 C -0.029 4.029 5 N -0.838 5.838 6 S 2.781 3.219 7 O -0.954 6.954 8 O -0.959 6.959 9 C -0.716 4.716 10 C -0.179 4.179 11 C -0.110 4.110 12 C -0.217 4.217 13 C 0.072 3.928 14 C -0.470 4.470 15 H 0.114 0.886 16 C -0.136 4.136 17 N -0.421 5.421 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.166 1.166 22 C -0.121 4.121 23 C -0.024 4.024 24 C 0.061 3.939 25 C -0.241 4.241 26 C -0.194 4.194 27 O -0.288 6.288 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.322 -8.032 -2.326 14.891 hybrid contribution -0.273 1.533 -0.345 1.595 sum -12.595 -6.498 -2.671 14.422 Atomic orbital electron populations 1.21729 0.92654 1.02920 1.02726 1.22563 0.94943 0.96342 0.85227 0.90966 1.22179 0.79459 1.01938 0.99319 1.57900 1.16295 1.77754 1.31898 1.01974 0.72607 0.74834 0.72497 1.93537 1.45556 1.70557 1.85767 1.93512 1.70745 1.87752 1.43857 1.29998 1.07212 1.21359 1.12991 1.20019 1.00608 0.92296 1.05008 1.20688 0.96704 0.95321 0.98253 1.21289 0.99164 0.98366 1.02906 1.17766 0.92149 0.91034 0.91900 1.19527 1.00459 1.03879 1.23148 0.88630 1.26159 0.97993 0.95767 0.93674 1.69679 1.27386 1.18094 1.26959 0.86382 0.82974 0.80154 0.77295 1.19501 1.21384 1.16614 1.20822 0.95069 0.96931 0.99304 1.22108 0.99648 0.97692 0.82914 1.21853 0.81312 0.95785 0.94964 1.22495 1.02793 0.95470 1.03369 1.21729 1.01877 1.00617 0.95151 1.87929 1.20576 1.77227 1.43035 0.91750 0.90838 0.91613 0.90469 0.88465 0.87243 0.87946 0.87670 0.90147 0.86472 0.88164 0.90470 0.90542 0.91908 0.91051 0.91815 0.91505 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.57 37.16 0.36 -0.98 16 2 C 0.07 0.83 3.03 -26.36 -0.08 0.75 16 3 H 0.07 0.96 6.25 -51.93 -0.32 0.64 16 4 C 0.10 1.22 5.88 -3.32 -0.02 1.20 16 5 N -1.00 -14.78 2.86 -112.82 -0.32 -15.11 16 6 S 2.68 48.66 5.70 -107.50 -0.61 48.05 16 7 O -0.96 -19.44 16.07 -57.18 -0.92 -20.36 16 8 O -0.97 -18.82 16.06 -57.18 -0.92 -19.74 16 9 C -0.62 -12.52 5.39 -39.66 -0.21 -12.73 16 10 C -0.16 -3.11 9.53 -39.29 -0.37 -3.48 16 11 C -0.09 -1.82 10.02 -39.67 -0.40 -2.22 16 12 C -0.20 -4.44 7.18 -38.88 -0.28 -4.72 16 13 C 0.08 1.79 5.11 -106.82 -0.55 1.25 16 14 C -0.44 -11.19 9.57 -37.74 -0.36 -11.55 16 15 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.08 2.07 5.40 -17.34 -0.09 1.98 16 17 N -0.80 -20.10 13.93 55.55 0.77 -19.33 16 18 Si 0.91 19.28 24.52 -169.99 -4.17 15.12 16 19 H -0.27 -5.58 6.71 56.52 0.38 -5.20 16 20 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.24 -5.19 6.86 56.52 0.39 -4.81 16 22 C -0.10 -2.19 9.26 -38.87 -0.36 -2.55 16 23 C 0.10 1.37 5.23 -3.53 -0.02 1.35 16 24 C 0.10 1.31 1.11 -90.46 -0.10 1.21 16 25 C -0.18 -2.72 8.10 37.16 0.30 -2.42 16 26 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 27 O -0.37 -4.85 9.87 -35.23 -0.35 -5.20 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.18 7.24 -51.93 -0.38 0.81 16 33 H 0.11 1.92 7.60 -52.49 -0.40 1.52 16 34 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.11 2.34 4.73 -52.49 -0.25 2.09 16 36 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 37 H 0.12 2.47 7.60 -52.48 -0.40 2.07 16 38 H 0.10 1.37 7.24 -51.93 -0.38 0.99 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.16 5.53 -51.93 -0.29 0.87 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -29.08 364.93 -9.53 -38.61 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.65 Total: 6.47 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: -1.86 Total: -34.01 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.45 Total: -34.43 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -2.18 Total: -45.29 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.17 Total: 15.12 kcal Atomic # 16 Polarization: 48.66 SS G_CDS: -0.61 Total: 48.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.08 -9.53 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.542 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds