Wall clock time and date at job start Tue Mar 31 2020 23:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50969 * 2 1 4 4 C 1.53710 * 109.44255 * 120.28101 * 2 1 3 5 5 N 1.47149 * 108.16345 * 172.37498 * 4 2 1 6 6 S 1.65601 * 120.98265 * 129.43412 * 5 4 2 7 7 O 1.42099 * 106.40147 * 156.18229 * 6 5 4 8 8 O 1.42089 * 106.40336 * 23.25882 * 6 5 4 9 9 C 1.76201 * 107.21693 * 269.71558 * 6 5 4 10 10 C 1.38662 * 119.87301 * 90.00129 * 9 6 5 11 11 C 1.38610 * 120.50107 * 180.02562 * 10 9 6 12 12 C 1.37631 * 120.25110 * 359.97438 * 11 10 9 13 13 C 1.40697 * 119.74351 * 0.02562 * 12 11 10 14 14 C 1.41395 * 120.24697 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00200 * 150.22353 * 14 13 12 16 16 C 1.39942 * 119.99829 * 330.22936 * 14 13 12 17 17 N 1.30827 * 120.00293 * 161.74155 * 16 14 13 18 18 Si 1.86801 * 120.00033 * 341.74104 * 16 14 13 19 19 H 1.48497 * 109.47291 * 95.41779 * 18 16 14 20 20 H 1.48508 * 109.46877 * 215.41691 * 18 16 14 21 21 H 1.48496 * 109.47223 * 335.41170 * 18 16 14 22 22 C 1.37590 * 119.88078 * 270.02260 * 9 6 5 23 23 C 1.47158 * 118.03495 * 309.16104 * 5 4 2 24 24 C 1.53291 * 108.38460 * 50.78438 * 23 5 4 25 25 C 1.53008 * 109.51372 * 67.62162 * 24 23 5 26 26 C 1.53002 * 109.51454 * 187.77445 * 24 23 5 27 27 O 1.42952 * 109.51256 * 239.89516 * 2 1 3 28 28 H 1.08995 * 109.47096 * 180.10483 * 1 2 3 29 29 H 1.08999 * 109.47034 * 300.10920 * 1 2 3 30 30 H 1.09004 * 109.46809 * 60.10181 * 1 2 3 31 31 H 1.09000 * 109.83778 * 52.69230 * 4 2 1 32 32 H 1.09005 * 109.75072 * 292.00244 * 4 2 1 33 33 H 1.08000 * 119.74590 * 359.97438 * 10 9 6 34 34 H 1.08008 * 119.87352 * 179.72543 * 11 10 9 35 35 H 1.08000 * 120.13407 * 180.02562 * 12 11 10 36 36 H 0.96995 * 120.00543 * 179.97438 * 17 16 14 37 37 H 1.08006 * 120.12773 * 359.97438 * 22 9 6 38 38 H 1.08994 * 109.68185 * 170.50463 * 23 5 4 39 39 H 1.09002 * 109.68006 * 291.06225 * 23 5 4 40 40 H 1.08997 * 109.46894 * 60.00043 * 25 24 23 41 41 H 1.08995 * 109.47020 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47024 * 299.99925 * 25 24 23 43 43 H 1.08997 * 109.46917 * 59.99956 * 26 24 23 44 44 H 1.08999 * 109.47086 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46698 * 300.00104 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0417 -0.7309 1.2517 5 7 3.5011 -0.8766 1.1333 6 16 4.5063 -0.4200 2.3676 7 8 5.7049 -1.1659 2.2058 8 8 3.7251 -0.4522 3.5541 9 6 4.9309 1.2685 2.0970 10 6 4.1449 2.2738 2.6396 11 6 4.4665 3.6064 2.4344 12 6 5.5724 3.9459 1.6887 13 6 6.3772 2.9343 1.1333 14 6 7.5154 3.2711 0.3650 15 1 8.3673 2.6075 0.3423 16 6 7.5382 4.4642 -0.3659 17 7 8.6777 4.9570 -0.7785 18 14 5.9415 5.3534 -0.7524 19 1 5.7022 6.4067 0.2665 20 1 6.0353 5.9773 -2.0968 21 1 4.8176 4.3829 -0.7346 22 6 6.0408 1.5847 1.3478 23 6 4.0407 -1.4457 -0.1119 24 6 3.4313 -0.6850 -1.2950 25 6 3.9531 0.7534 -1.3010 26 6 3.8213 -1.3767 -2.6028 27 8 2.0075 -0.6758 -1.1657 28 1 -0.3633 -1.0276 0.0019 29 1 -0.3633 0.5155 0.8890 30 1 -0.3633 0.5123 -0.8909 31 1 1.5788 -1.7153 1.3203 32 1 1.8019 -0.1491 2.1418 33 1 3.2751 2.0165 3.2257 34 1 3.8447 4.3813 2.8580 35 1 5.8214 4.9848 1.5304 36 1 8.6935 5.7838 -1.2854 37 1 6.6517 0.8001 0.9262 38 1 5.1252 -1.3375 -0.1253 39 1 3.7757 -2.5009 -0.1782 40 1 5.0390 0.7455 -1.3951 41 1 3.5191 1.2938 -2.1422 42 1 3.6726 1.2455 -0.3698 43 1 3.4470 -2.4003 -2.5980 44 1 3.3881 -0.8349 -3.4436 45 1 4.9071 -1.3872 -2.6985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:39 Heat of formation + Delta-G solvation = -119.963298 kcal Electronic energy + Delta-G solvation = -29594.268403 eV Core-core repulsion = 25702.616738 eV Total energy + Delta-G solvation = -3891.651665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95077 -39.70842 -38.45854 -37.02987 -35.88385 -35.65431 -35.32743 -32.56100 -31.93908 -31.53076 -28.37596 -28.01034 -27.24820 -25.95582 -24.09955 -22.87795 -22.66429 -20.79546 -20.20889 -19.63334 -18.68929 -18.10690 -17.81885 -17.14391 -17.11911 -16.61343 -16.22135 -16.02181 -15.56251 -15.48795 -15.37841 -14.85287 -14.70492 -14.25989 -14.03581 -13.67229 -13.63121 -13.47655 -13.43483 -13.39539 -13.20180 -13.15858 -13.01224 -12.89313 -12.79520 -12.77034 -12.72212 -12.60942 -12.34427 -12.02968 -11.98008 -11.84071 -11.63010 -11.34406 -11.13132 -10.94097 -10.01671 -9.76414 -9.69400 -8.97620 -6.60616 -0.69235 0.15001 0.63884 1.20129 1.34283 1.41530 1.85801 2.03450 2.40725 2.64739 2.67780 3.19124 3.27345 3.60990 3.68666 3.94759 3.98334 4.03952 4.15095 4.25998 4.27767 4.30718 4.39552 4.41427 4.62499 4.69901 4.73242 4.76625 4.78389 4.80252 4.81184 4.92656 5.02127 5.04744 5.06294 5.12640 5.23829 5.31514 5.32216 5.41436 5.41662 5.48070 5.61052 5.75180 5.97026 6.23214 6.29219 6.56741 6.68377 8.10430 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.005286 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.791645 B = 5295.568820 C = 5945.300459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.064 3.936 3 H 0.058 0.942 4 C 0.089 3.911 5 N -0.995 5.995 6 S 2.705 3.295 7 O -0.987 6.987 8 O -0.976 6.976 9 C -0.632 4.632 10 C -0.142 4.142 11 C -0.093 4.093 12 C -0.206 4.206 13 C 0.060 3.940 14 C -0.480 4.480 15 H 0.059 0.941 16 C 0.051 3.949 17 N -0.841 5.841 18 Si 0.956 3.044 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.246 1.246 22 C -0.111 4.111 23 C 0.094 3.906 24 C 0.105 3.895 25 C -0.184 4.184 26 C -0.134 4.134 27 O -0.371 6.371 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.296 0.704 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.381 -8.128 -2.256 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.005 3.995 3 H 0.076 0.924 4 C -0.036 4.036 5 N -0.834 5.834 6 S 2.799 3.201 7 O -0.978 6.978 8 O -0.967 6.967 9 C -0.721 4.721 10 C -0.163 4.163 11 C -0.112 4.112 12 C -0.225 4.225 13 C 0.056 3.944 14 C -0.509 4.509 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.467 5.467 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.202 1.202 21 H -0.170 1.170 22 C -0.132 4.132 23 C -0.031 4.031 24 C 0.064 3.936 25 C -0.241 4.241 26 C -0.192 4.192 27 O -0.290 6.290 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.999 -8.610 -1.820 18.260 hybrid contribution 0.725 1.561 -0.375 1.762 sum -15.274 -7.050 -2.196 16.965 Atomic orbital electron populations 1.21742 0.90281 1.03879 1.03634 1.22697 0.96734 0.95352 0.84704 0.92443 1.22501 0.77729 1.03478 0.99885 1.57667 1.17040 1.77094 1.31621 1.01337 0.72287 0.73696 0.72759 1.93507 1.47331 1.70618 1.86319 1.93494 1.70757 1.87537 1.44887 1.30422 1.06364 1.23423 1.11892 1.20538 1.00560 0.92065 1.03123 1.21119 0.96167 0.96671 0.97251 1.21469 0.99744 0.98153 1.03141 1.17881 0.92143 0.92270 0.92069 1.19451 1.00691 1.04645 1.26081 0.92243 1.26789 1.00573 0.96043 0.93060 1.69710 1.28937 1.19264 1.28773 0.85626 0.79339 0.79282 0.77910 1.18063 1.20222 1.16957 1.20797 0.95939 0.96262 1.00219 1.22337 0.99374 0.99026 0.82342 1.21848 0.81380 0.94483 0.95867 1.22484 1.01982 0.97090 1.02549 1.21748 1.02390 1.01234 0.93820 1.87944 1.20299 1.77207 1.43573 0.90760 0.89147 0.91546 0.88263 0.87778 0.84223 0.84066 0.87571 0.89368 0.87092 0.89022 0.88070 0.91931 0.91668 0.92667 0.90257 0.91216 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.57 71.98 0.69 -1.41 16 2 C 0.06 1.38 3.03 30.83 0.09 1.48 16 3 H 0.06 1.41 6.25 -2.39 -0.01 1.40 16 4 C 0.09 1.95 5.88 86.49 0.51 2.46 16 5 N -1.00 -27.30 2.86 -510.86 -1.46 -28.76 16 6 S 2.70 94.10 5.70 -56.49 -0.32 93.78 16 7 O -0.99 -39.50 16.07 -128.00 -2.06 -41.56 16 8 O -0.98 -35.43 16.06 -128.00 -2.06 -37.49 16 9 C -0.63 -24.71 5.39 22.22 0.12 -24.59 16 10 C -0.14 -5.19 9.53 22.46 0.21 -4.97 16 11 C -0.09 -3.49 10.02 22.22 0.22 -3.27 16 12 C -0.21 -9.07 7.18 22.73 0.16 -8.91 16 13 C 0.06 2.91 5.11 -21.29 -0.11 2.80 16 14 C -0.48 -25.79 9.57 23.46 0.22 -25.57 16 15 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 16 C 0.05 2.61 5.40 85.26 0.46 3.07 16 17 N -0.84 -44.40 13.93 21.83 0.30 -44.09 16 18 Si 0.96 39.84 24.52 68.60 1.68 41.53 16 19 H -0.26 -10.01 6.71 99.48 0.67 -9.34 16 20 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.25 -10.25 6.86 99.48 0.68 -9.56 16 22 C -0.11 -4.98 9.26 22.73 0.21 -4.77 16 23 C 0.09 2.37 5.23 86.35 0.45 2.82 16 24 C 0.11 2.54 1.11 -10.69 -0.01 2.53 16 25 C -0.18 -5.38 8.10 71.98 0.58 -4.79 16 26 C -0.13 -2.58 8.85 71.98 0.64 -1.94 16 27 O -0.37 -8.82 9.87 -148.98 -1.47 -10.29 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 2.15 7.24 -2.38 -0.02 2.14 16 33 H 0.14 4.28 7.60 -2.91 -0.02 4.25 16 34 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.11 4.62 4.73 -2.91 -0.01 4.61 16 36 H 0.30 13.97 8.30 -92.71 -0.77 13.20 16 37 H 0.11 4.97 7.60 -2.91 -0.02 4.94 16 38 H 0.09 2.47 7.24 -2.39 -0.02 2.46 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.77 5.53 -2.39 -0.01 1.75 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.02 364.93 0.01 -64.01 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.93 Total: 27.91 kcal Atomic # 6 Polarization: -69.50 SS G_CDS: 4.46 Total: -65.05 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.15 Total: -72.85 kcal Atomic # 8 Polarization: -83.75 SS G_CDS: -5.58 Total: -89.33 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.68 Total: 41.53 kcal Atomic # 16 Polarization: 94.10 SS G_CDS: -0.32 Total: 93.78 kcal Total: -64.02 0.01 -64.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.950 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds