Wall clock time and date at job start Tue Mar 31 2020 22:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 H 1.09003 * 109.51433 * 305.10099 * 3 2 1 5 5 C 1.53293 * 109.51269 * 184.99853 * 3 2 1 6 6 N 1.47151 * 108.38690 * 187.77282 * 5 3 2 7 7 S 1.65603 * 120.98583 * 230.51701 * 6 5 3 8 8 O 1.42094 * 106.39900 * 336.45608 * 7 6 5 9 9 O 1.42104 * 106.40134 * 203.53649 * 7 6 5 10 10 C 1.76194 * 107.21712 * 89.99705 * 7 6 5 11 11 C 1.38658 * 119.87875 * 90.00749 * 10 7 6 12 12 C 1.38613 * 120.50574 * 180.02562 * 11 10 7 13 13 C 1.37635 * 120.24501 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.74804 * 0.02562 * 13 12 11 15 15 C 1.41393 * 120.24545 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99832 * 335.03650 * 15 14 13 17 17 C 1.39940 * 120.00192 * 155.04007 * 15 14 13 18 18 N 1.30829 * 120.00006 * 334.22108 * 17 15 14 19 19 Si 1.86800 * 120.00285 * 154.22670 * 17 15 14 20 20 H 1.48501 * 109.47061 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47102 * 119.99572 * 19 17 15 22 22 H 1.48501 * 109.46852 * 239.99798 * 19 17 15 23 23 C 1.37596 * 119.87624 * 270.28075 * 10 7 6 24 24 C 1.47152 * 118.03409 * 50.78398 * 6 5 3 25 25 C 1.53718 * 108.16459 * 309.16467 * 24 6 5 26 26 H 1.09000 * 109.69584 * 292.54344 * 25 24 6 27 27 C 1.52998 * 109.44181 * 172.37253 * 25 24 6 28 28 O 1.42955 * 109.14644 * 52.53460 * 25 24 6 29 29 H 1.08997 * 109.46788 * 59.99788 * 1 2 3 30 30 H 1.08997 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46801 * 299.99833 * 1 2 3 32 32 H 1.09002 * 109.47047 * 239.99675 * 2 1 3 33 33 H 1.09000 * 109.46878 * 119.99688 * 2 1 3 34 34 H 1.08999 * 109.68071 * 68.05164 * 5 3 2 35 35 H 1.08999 * 109.71584 * 307.51270 * 5 3 2 36 36 H 1.08001 * 119.74709 * 0.02562 * 11 10 7 37 37 H 1.07994 * 119.87713 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.12787 * 179.97438 * 13 12 11 39 39 H 0.97004 * 119.99621 * 354.24211 * 18 17 15 40 40 H 1.08002 * 120.12825 * 359.97438 * 23 10 7 41 41 H 1.09001 * 109.68306 * 68.94132 * 24 6 5 42 42 H 1.09000 * 109.68745 * 189.48939 * 24 6 5 43 43 H 1.08996 * 109.47376 * 300.38010 * 27 25 24 44 44 H 1.09005 * 109.47396 * 60.38931 * 27 25 24 45 45 H 1.09004 * 109.46755 * 180.38714 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9827 -0.8406 5 6 3.5678 1.4453 -0.1259 6 7 4.0466 2.8237 0.0644 7 16 5.0854 3.5227 -1.0195 8 8 5.7575 2.4566 -1.6758 9 8 5.7646 4.5541 -0.3165 10 6 4.1017 4.3201 -2.2447 11 6 3.7196 5.6416 -2.0712 12 6 2.9455 6.2815 -3.0266 13 6 2.5477 5.6097 -4.1601 14 6 2.9295 4.2684 -4.3468 15 6 2.5272 3.5684 -5.5076 16 1 1.6390 3.8730 -6.0412 17 6 3.2799 2.4809 -5.9650 18 7 4.5546 2.4021 -5.6814 19 14 2.4645 1.1417 -6.9805 20 1 1.0260 1.4634 -7.1601 21 1 3.1230 1.0577 -8.3088 22 1 2.5963 -0.1606 -6.2793 23 6 3.7109 3.6273 -3.3675 24 6 3.5799 3.5606 1.2495 25 6 2.0472 3.4565 1.3057 26 1 1.6109 4.0049 0.4708 27 6 1.5446 4.0479 2.6241 28 8 1.6675 2.0807 1.2238 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8553 1.0902 -1.1155 35 1 4.0008 0.7978 0.6365 36 1 4.0276 6.1766 -1.1850 37 1 2.6533 7.3109 -2.8809 38 1 1.9442 6.1100 -4.9030 39 1 4.9966 3.1363 -5.2268 40 1 4.0062 2.5968 -3.4988 41 1 4.0135 3.1226 2.1485 42 1 3.8753 4.6069 1.1713 43 1 1.9826 3.5001 3.4585 44 1 1.8345 5.0969 2.6858 45 1 0.4583 3.9680 2.6674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619483074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:20 Heat of formation + Delta-G solvation = -115.689745 kcal Electronic energy + Delta-G solvation = -29103.281184 eV Core-core repulsion = 25211.814834 eV Total energy + Delta-G solvation = -3891.466350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.53184 -37.91343 -36.81491 -35.37755 -34.83294 -34.46345 -34.09795 -31.44182 -30.33613 -29.51684 -28.27134 -25.85627 -25.35970 -23.50085 -22.01733 -21.46822 -21.25058 -20.72521 -18.83062 -18.25059 -17.26701 -16.78434 -16.28658 -15.91470 -15.39598 -14.97349 -14.71300 -14.59361 -14.27272 -14.12202 -14.00371 -13.67008 -13.43478 -13.13778 -12.56404 -12.54186 -12.37525 -12.23989 -12.13109 -11.96243 -11.80577 -11.63685 -11.52882 -11.37354 -11.30521 -11.26580 -11.21114 -11.00759 -10.91477 -10.74329 -10.52258 -10.33599 -10.20315 -9.90562 -9.53363 -9.18313 -8.66117 -8.31917 -7.88616 -7.38421 -4.65579 0.86179 1.98586 2.54742 3.07199 3.12516 3.25361 3.32435 3.63810 3.89512 4.17763 4.31860 4.51281 4.79929 4.83189 4.94761 5.00885 5.11427 5.16844 5.19253 5.28333 5.35543 5.42124 5.56909 5.62345 5.68164 5.75889 5.83011 5.86508 5.92702 5.97413 6.02391 6.07331 6.14755 6.23230 6.31985 6.32353 6.51563 6.54890 6.79118 6.99439 7.20323 7.25209 7.43598 7.51173 7.54422 7.85946 7.96790 8.45962 8.62368 9.87492 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.005341 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.793105 B = 5241.522329 C = 6343.482537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.070 0.930 5 C 0.094 3.906 6 N -1.004 6.004 7 S 2.682 3.318 8 O -0.959 6.959 9 O -0.970 6.970 10 C -0.621 4.621 11 C -0.171 4.171 12 C -0.095 4.095 13 C -0.188 4.188 14 C 0.078 3.922 15 C -0.516 4.516 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.782 5.782 19 Si 1.069 2.931 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.271 1.271 23 C -0.118 4.118 24 C 0.096 3.904 25 C 0.073 3.927 26 H 0.068 0.932 27 C -0.142 4.142 28 O -0.371 6.371 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.301 0.699 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -2.464 11.450 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.031 4.031 6 N -0.840 5.840 7 S 2.779 3.221 8 O -0.949 6.949 9 O -0.961 6.961 10 C -0.713 4.713 11 C -0.193 4.193 12 C -0.114 4.114 13 C -0.208 4.208 14 C 0.074 3.926 15 C -0.543 4.543 16 H 0.099 0.901 17 C -0.189 4.189 18 N -0.404 5.404 19 Si 0.892 3.108 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.196 1.196 23 C -0.139 4.139 24 C -0.029 4.029 25 C 0.014 3.986 26 H 0.086 0.914 27 C -0.200 4.200 28 O -0.291 6.291 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.147 -4.071 10.942 12.759 hybrid contribution -0.683 2.057 0.098 2.169 sum -5.830 -2.015 11.040 12.646 Atomic orbital electron populations 1.21694 0.95049 1.01401 1.02391 1.21517 0.96965 0.93805 1.03006 1.22534 0.93319 0.94607 0.87706 0.91234 1.22106 0.95005 0.82226 1.03775 1.57957 1.66517 1.22538 1.37004 1.02035 0.73740 0.73222 0.73073 1.93562 1.71100 1.55278 1.75002 1.93503 1.71112 1.58146 1.73315 1.29954 1.20192 1.06322 1.14797 1.19952 1.04877 0.93452 1.00976 1.20671 0.98063 0.97961 0.94696 1.21184 1.06726 0.94424 0.98500 1.17741 0.90936 0.91157 0.92753 1.20637 1.11518 1.13028 1.09131 0.90107 1.27153 0.94597 1.00010 0.97157 1.70442 1.09815 1.34313 1.25854 0.83587 0.75762 0.75129 0.76325 1.19994 1.20111 1.19580 1.20983 1.01411 0.98835 0.92715 1.22176 0.95060 0.97576 0.88137 1.22531 0.93426 0.83511 0.99164 0.91440 1.21726 1.02043 1.00549 0.95670 1.87881 1.79785 1.23427 1.37967 0.92649 0.92813 0.92096 0.90068 0.91019 0.88179 0.90468 0.87624 0.88296 0.88180 0.88507 0.85949 0.90513 0.88488 0.91712 0.90805 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.16 0.36 -1.23 16 2 C -0.11 -1.31 5.64 -26.73 -0.15 -1.46 16 3 C 0.08 1.07 2.78 -26.58 -0.07 1.00 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.09 1.40 5.85 -3.53 -0.02 1.38 16 6 N -1.00 -16.37 3.34 -112.82 -0.38 -16.74 16 7 S 2.68 54.17 5.70 -107.50 -0.61 53.56 16 8 O -0.96 -21.87 16.07 -57.17 -0.92 -22.79 16 9 O -0.97 -20.57 16.06 -57.17 -0.92 -21.48 16 10 C -0.62 -13.89 5.96 -39.66 -0.24 -14.13 16 11 C -0.17 -3.67 9.53 -39.29 -0.37 -4.04 16 12 C -0.09 -2.00 10.02 -39.66 -0.40 -2.40 16 13 C -0.19 -4.36 9.80 -38.87 -0.38 -4.74 16 14 C 0.08 1.97 5.30 -106.82 -0.57 1.40 16 15 C -0.52 -12.99 8.98 -37.75 -0.34 -13.33 16 16 H 0.08 1.96 7.96 -52.48 -0.42 1.55 16 17 C 0.03 0.83 4.93 -17.34 -0.09 0.75 16 18 N -0.78 -20.57 12.31 55.55 0.68 -19.89 16 19 Si 1.07 20.73 30.00 -169.99 -5.10 15.63 16 20 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.12 -2.91 7.42 -38.87 -0.29 -3.20 16 24 C 0.10 1.32 5.88 -3.31 -0.02 1.30 16 25 C 0.07 0.93 3.41 -26.36 -0.09 0.84 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 27 C -0.14 -1.38 9.57 37.16 0.36 -1.02 16 28 O -0.37 -5.06 9.57 -35.23 -0.34 -5.40 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.58 7.25 -51.93 -0.38 1.20 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 2.04 7.60 -52.49 -0.40 1.64 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.30 8.23 6.70 -40.82 -0.27 7.96 16 40 H 0.12 3.13 6.04 -52.49 -0.32 2.82 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.30 7.24 -51.93 -0.38 0.92 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -30.15 375.58 -11.08 -41.23 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.86 Total: 9.11 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: -2.30 Total: -38.88 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.31 Total: -36.63 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -2.17 Total: -49.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.10 Total: 15.63 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.61 Total: 53.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.15 -11.08 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619483074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.462 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds