Wall clock time and date at job start Tue Mar 31 2020 22:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 H 1.09003 * 109.51433 * 305.10099 * 3 2 1 5 5 C 1.53293 * 109.51269 * 184.99853 * 3 2 1 6 6 N 1.47151 * 108.38690 * 187.77282 * 5 3 2 7 7 S 1.65603 * 120.98583 * 230.51701 * 6 5 3 8 8 O 1.42094 * 106.39900 * 336.45608 * 7 6 5 9 9 O 1.42104 * 106.40134 * 203.53649 * 7 6 5 10 10 C 1.76194 * 107.21712 * 89.99705 * 7 6 5 11 11 C 1.38658 * 119.87875 * 90.00749 * 10 7 6 12 12 C 1.38613 * 120.50574 * 180.02562 * 11 10 7 13 13 C 1.37635 * 120.24501 * 359.97438 * 12 11 10 14 14 C 1.40704 * 119.74804 * 0.02562 * 13 12 11 15 15 C 1.41393 * 120.24545 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99832 * 335.03650 * 15 14 13 17 17 C 1.39940 * 120.00192 * 155.04007 * 15 14 13 18 18 N 1.30829 * 120.00006 * 334.22108 * 17 15 14 19 19 Si 1.86800 * 120.00285 * 154.22670 * 17 15 14 20 20 H 1.48501 * 109.47061 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47102 * 119.99572 * 19 17 15 22 22 H 1.48501 * 109.46852 * 239.99798 * 19 17 15 23 23 C 1.37596 * 119.87624 * 270.28075 * 10 7 6 24 24 C 1.47152 * 118.03409 * 50.78398 * 6 5 3 25 25 C 1.53718 * 108.16459 * 309.16467 * 24 6 5 26 26 H 1.09000 * 109.69584 * 292.54344 * 25 24 6 27 27 C 1.52998 * 109.44181 * 172.37253 * 25 24 6 28 28 O 1.42955 * 109.14644 * 52.53460 * 25 24 6 29 29 H 1.08997 * 109.46788 * 59.99788 * 1 2 3 30 30 H 1.08997 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46801 * 299.99833 * 1 2 3 32 32 H 1.09002 * 109.47047 * 239.99675 * 2 1 3 33 33 H 1.09000 * 109.46878 * 119.99688 * 2 1 3 34 34 H 1.08999 * 109.68071 * 68.05164 * 5 3 2 35 35 H 1.08999 * 109.71584 * 307.51270 * 5 3 2 36 36 H 1.08001 * 119.74709 * 0.02562 * 11 10 7 37 37 H 1.07994 * 119.87713 * 179.97438 * 12 11 10 38 38 H 1.08007 * 120.12787 * 179.97438 * 13 12 11 39 39 H 0.97004 * 119.99621 * 354.24211 * 18 17 15 40 40 H 1.08002 * 120.12825 * 359.97438 * 23 10 7 41 41 H 1.09001 * 109.68306 * 68.94132 * 24 6 5 42 42 H 1.09000 * 109.68745 * 189.48939 * 24 6 5 43 43 H 1.08996 * 109.47376 * 300.38010 * 27 25 24 44 44 H 1.09005 * 109.47396 * 60.38931 * 27 25 24 45 45 H 1.09004 * 109.46755 * 180.38714 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9827 -0.8406 5 6 3.5678 1.4453 -0.1259 6 7 4.0466 2.8237 0.0644 7 16 5.0854 3.5227 -1.0195 8 8 5.7575 2.4566 -1.6758 9 8 5.7646 4.5541 -0.3165 10 6 4.1017 4.3201 -2.2447 11 6 3.7196 5.6416 -2.0712 12 6 2.9455 6.2815 -3.0266 13 6 2.5477 5.6097 -4.1601 14 6 2.9295 4.2684 -4.3468 15 6 2.5272 3.5684 -5.5076 16 1 1.6390 3.8730 -6.0412 17 6 3.2799 2.4809 -5.9650 18 7 4.5546 2.4021 -5.6814 19 14 2.4645 1.1417 -6.9805 20 1 1.0260 1.4634 -7.1601 21 1 3.1230 1.0577 -8.3088 22 1 2.5963 -0.1606 -6.2793 23 6 3.7109 3.6273 -3.3675 24 6 3.5799 3.5606 1.2495 25 6 2.0472 3.4565 1.3057 26 1 1.6109 4.0049 0.4708 27 6 1.5446 4.0479 2.6241 28 8 1.6675 2.0807 1.2238 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8553 1.0902 -1.1155 35 1 4.0008 0.7978 0.6365 36 1 4.0276 6.1766 -1.1850 37 1 2.6533 7.3109 -2.8809 38 1 1.9442 6.1100 -4.9030 39 1 4.9966 3.1363 -5.2268 40 1 4.0062 2.5968 -3.4988 41 1 4.0135 3.1226 2.1485 42 1 3.8753 4.6069 1.1713 43 1 1.9826 3.5001 3.4585 44 1 1.8345 5.0969 2.6858 45 1 0.4583 3.9680 2.6674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619483074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:19 Heat of formation + Delta-G solvation = -134.062132 kcal Electronic energy + Delta-G solvation = -29104.077871 eV Core-core repulsion = 25211.814834 eV Total energy + Delta-G solvation = -3892.263036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.63984 -39.72468 -38.51259 -37.08803 -36.02300 -35.93142 -35.49121 -32.38081 -32.14652 -31.33678 -29.32556 -27.23735 -26.93171 -24.58571 -23.74997 -23.07959 -22.44090 -21.85081 -20.51709 -19.83775 -18.79301 -18.02843 -17.87582 -17.30002 -16.79477 -16.47639 -16.30082 -15.89212 -15.74864 -15.57348 -15.32544 -15.09020 -14.65379 -14.34934 -14.12101 -14.06128 -13.61203 -13.50096 -13.41810 -13.29764 -13.25837 -13.09508 -13.05190 -12.86664 -12.85512 -12.74804 -12.46333 -12.28023 -11.99782 -11.95501 -11.83816 -11.75477 -11.60452 -11.32995 -11.10243 -10.99420 -10.14892 -9.85873 -9.73373 -9.30506 -6.59357 -0.74015 0.18135 0.73568 1.47511 1.56226 1.75763 1.83531 2.27974 2.45892 2.60778 2.62324 3.13989 3.29049 3.59202 3.62073 3.88651 3.97227 4.03612 4.15855 4.19257 4.25444 4.32061 4.33874 4.42078 4.52112 4.56939 4.67985 4.74273 4.76765 4.81585 4.87819 4.89137 4.98772 5.07144 5.11089 5.15394 5.25817 5.28295 5.35610 5.42342 5.43943 5.55523 5.64324 5.67993 5.98803 6.12286 6.18526 6.58240 6.77163 7.92906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010118 B = 0.005341 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.793105 B = 5241.522329 C = 6343.482537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.081 3.919 4 H 0.045 0.955 5 C 0.088 3.912 6 N -0.997 5.997 7 S 2.702 3.298 8 O -0.990 6.990 9 O -0.978 6.978 10 C -0.633 4.633 11 C -0.164 4.164 12 C -0.094 4.094 13 C -0.197 4.197 14 C 0.050 3.950 15 C -0.547 4.547 16 H 0.081 0.919 17 C 0.001 3.999 18 N -0.813 5.813 19 Si 1.116 2.884 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.264 1.264 23 C -0.138 4.138 24 C 0.087 3.913 25 C 0.070 3.930 26 H 0.051 0.949 27 C -0.136 4.136 28 O -0.370 6.370 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.281 0.719 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 -2.239 13.453 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.021 3.979 4 H 0.063 0.937 5 C -0.037 4.037 6 N -0.837 5.837 7 S 2.798 3.202 8 O -0.981 6.981 9 O -0.969 6.969 10 C -0.723 4.723 11 C -0.185 4.185 12 C -0.113 4.113 13 C -0.216 4.216 14 C 0.047 3.953 15 C -0.575 4.575 16 H 0.100 0.900 17 C -0.215 4.215 18 N -0.435 5.435 19 Si 0.932 3.068 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.159 4.159 24 C -0.037 4.037 25 C 0.010 3.990 26 H 0.069 0.931 27 C -0.194 4.194 28 O -0.290 6.290 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.377 -3.805 12.937 14.917 hybrid contribution -0.318 2.148 -0.330 2.196 sum -6.695 -1.657 12.607 14.371 Atomic orbital electron populations 1.21666 0.94458 1.02398 1.01677 1.21557 0.97449 0.92209 1.03940 1.22490 0.92332 0.95868 0.87169 0.93725 1.22316 0.95981 0.81634 1.03766 1.57698 1.66164 1.23092 1.36702 1.01348 0.73649 0.72552 0.72689 1.93519 1.72322 1.56142 1.76076 1.93478 1.71631 1.58635 1.73120 1.30363 1.19832 1.07126 1.14958 1.20442 1.03400 0.92997 1.01645 1.21115 0.96974 0.99729 0.93510 1.21485 1.06610 0.93880 0.99648 1.18113 0.91614 0.92395 0.93195 1.20816 1.12142 1.14596 1.09970 0.90048 1.28551 0.94140 1.01741 0.97098 1.70571 1.10910 1.33888 1.28142 0.83051 0.75834 0.72707 0.75204 1.18066 1.19114 1.18881 1.20816 1.02936 0.98325 0.93863 1.22539 0.95825 0.97821 0.87547 1.22670 0.92742 0.83098 1.00457 0.93104 1.21736 1.02286 1.01421 0.93923 1.87896 1.79726 1.23887 1.37454 0.93807 0.90969 0.92329 0.89761 0.89439 0.89844 0.87999 0.84936 0.84197 0.86936 0.90646 0.88049 0.88154 0.87979 0.90620 0.89126 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.81 71.98 0.71 -2.23 16 2 C -0.11 -2.46 5.64 30.59 0.17 -2.29 16 3 C 0.08 2.20 2.78 30.69 0.09 2.28 16 4 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.09 2.59 5.85 86.35 0.51 3.09 16 6 N -1.00 -31.80 3.34 -510.85 -1.70 -33.50 16 7 S 2.70 109.50 5.70 -56.49 -0.32 109.18 16 8 O -0.99 -46.60 16.07 -128.00 -2.06 -48.66 16 9 O -0.98 -40.41 16.06 -128.00 -2.06 -42.46 16 10 C -0.63 -28.68 5.96 22.22 0.13 -28.54 16 11 C -0.16 -6.80 9.53 22.46 0.21 -6.58 16 12 C -0.09 -3.83 10.02 22.22 0.22 -3.60 16 13 C -0.20 -9.07 9.80 22.73 0.22 -8.85 16 14 C 0.05 2.63 5.30 -21.29 -0.11 2.52 16 15 C -0.55 -28.62 8.98 23.46 0.21 -28.41 16 16 H 0.08 4.08 7.96 -2.91 -0.02 4.06 16 17 C 0.00 0.06 4.93 85.25 0.42 0.48 16 18 N -0.81 -44.93 12.31 21.83 0.27 -44.66 16 19 Si 1.12 42.35 30.00 68.60 2.06 44.40 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 C -0.14 -7.10 7.42 22.73 0.17 -6.94 16 24 C 0.09 2.20 5.88 86.50 0.51 2.71 16 25 C 0.07 1.65 3.41 30.84 0.11 1.75 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 C -0.14 -2.23 9.57 71.98 0.69 -1.54 16 28 O -0.37 -9.48 9.57 -148.98 -1.43 -10.91 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.21 7.83 -2.39 -0.02 1.19 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.74 7.25 -2.39 -0.02 2.72 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.13 4.75 7.60 -2.91 -0.02 4.72 16 37 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.28 16.42 6.70 -92.71 -0.62 15.80 16 40 H 0.10 5.56 6.04 -2.91 -0.02 5.54 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.09 16 42 H 0.10 2.47 7.24 -2.39 -0.02 2.46 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -67.09 375.58 0.14 -66.95 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 1.12 Total: 35.81 kcal Atomic # 6 Polarization: -80.40 SS G_CDS: 4.25 Total: -76.15 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.44 Total: -78.16 kcal Atomic # 8 Polarization: -96.49 SS G_CDS: -5.54 Total: -102.03 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.06 Total: 44.40 kcal Atomic # 16 Polarization: 109.50 SS G_CDS: -0.32 Total: 109.18 kcal Total: -67.09 0.14 -66.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619483074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.110 kcal (2) G-P(sol) polarization free energy of solvation -67.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds