Wall clock time and date at job start Tue Mar 31 2020 22:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46882 * 2 1 4 4 H 1.09001 * 109.55539 * 54.87204 * 3 2 1 5 5 C 1.53305 * 109.51183 * 174.99998 * 3 2 1 6 6 N 1.47150 * 108.38428 * 172.22757 * 5 3 2 7 7 S 1.65593 * 120.98487 * 129.44511 * 6 5 3 8 8 O 1.42101 * 106.40325 * 336.45088 * 7 6 5 9 9 O 1.42100 * 106.40499 * 203.53908 * 7 6 5 10 10 C 1.76195 * 107.22296 * 89.99365 * 7 6 5 11 11 C 1.38654 * 119.87862 * 269.98201 * 10 7 6 12 12 C 1.38608 * 120.50437 * 180.02562 * 11 10 7 13 13 C 1.37643 * 120.24605 * 359.66861 * 12 11 10 14 14 C 1.40695 * 119.74392 * 0.60708 * 13 12 11 15 15 C 1.41393 * 120.24454 * 179.69903 * 14 13 12 16 16 H 1.07997 * 120.00478 * 154.76603 * 15 14 13 17 17 C 1.39947 * 119.99653 * 334.76012 * 15 14 13 18 18 N 1.30822 * 120.00111 * 334.22858 * 17 15 14 19 19 Si 1.86800 * 119.99850 * 154.23640 * 17 15 14 20 20 H 1.48503 * 109.47271 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47364 * 119.99856 * 19 17 15 22 22 H 1.48498 * 109.46894 * 239.99538 * 19 17 15 23 23 C 1.37594 * 119.87539 * 90.00241 * 10 7 6 24 24 C 1.47153 * 118.03394 * 309.71354 * 6 5 3 25 25 C 1.52877 * 108.60858 * 50.22668 * 24 6 5 26 26 H 1.09004 * 109.58132 * 187.92322 * 25 24 6 27 27 C 1.53007 * 109.40747 * 67.84477 * 25 24 6 28 28 O 1.42956 * 109.51309 * 294.74261 * 3 2 1 29 29 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46802 * 300.00057 * 1 2 3 31 31 H 1.08997 * 109.46688 * 60.00257 * 1 2 3 32 32 H 1.08996 * 109.47201 * 239.99969 * 2 1 3 33 33 H 1.09009 * 109.47105 * 119.99666 * 2 1 3 34 34 H 1.08989 * 109.68119 * 52.49872 * 5 3 2 35 35 H 1.09004 * 109.67654 * 291.94479 * 5 3 2 36 36 H 1.08003 * 119.74826 * 0.02562 * 11 10 7 37 37 H 1.08001 * 119.87646 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.12631 * 180.30227 * 13 12 11 39 39 H 0.96998 * 119.99962 * 354.24215 * 18 17 15 40 40 H 1.08004 * 120.12817 * 359.97438 * 23 10 7 41 41 H 1.08999 * 109.68556 * 170.01203 * 24 6 5 42 42 H 1.09007 * 109.68234 * 290.56333 * 24 6 5 43 43 H 1.09003 * 109.46734 * 300.22460 * 27 25 24 44 44 H 1.08997 * 109.46922 * 60.22275 * 27 25 24 45 45 H 1.08990 * 109.47123 * 180.22356 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9835 0.8401 5 6 3.5678 1.4455 0.1259 6 7 4.0465 2.8239 -0.0643 7 16 5.0844 3.5232 1.0200 8 8 4.9076 2.8310 2.2484 9 8 4.9155 4.9280 0.8885 10 6 6.7227 3.1662 0.4790 11 6 7.3613 2.0177 0.9213 12 6 8.6502 1.7244 0.5043 13 6 9.3082 2.5690 -0.3606 14 6 8.6723 3.7403 -0.8114 15 6 9.3408 4.6187 -1.6950 16 1 8.7720 5.2627 -2.3493 17 6 10.7395 4.6536 -1.7217 18 7 11.4229 4.3029 -0.6627 19 14 11.6308 5.2012 -3.2693 20 1 10.6368 5.5423 -4.3186 21 1 12.4610 6.3947 -2.9665 22 1 12.5032 4.1013 -3.7534 23 6 7.3638 4.0283 -0.3807 24 6 3.5709 3.5646 -1.2436 25 6 2.0472 3.4565 -1.3057 26 1 1.6891 3.8778 -2.2451 27 6 1.4347 4.2264 -0.1339 28 8 1.6674 2.0807 -1.2238 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.0003 0.7981 -0.6368 35 1 3.8552 1.0904 1.1157 36 1 6.8505 1.3465 1.5959 37 1 9.1382 0.8272 0.8556 38 1 10.3107 2.3361 -0.6881 39 1 10.9622 4.0992 0.1662 40 1 6.8645 4.9223 -0.7241 41 1 3.8604 4.6121 -1.1605 42 1 4.0037 3.1341 -2.1467 43 1 1.7947 3.8057 0.8050 44 1 1.7247 5.2752 -0.1970 45 1 0.3485 4.1467 -0.1749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619483075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:23 Heat of formation + Delta-G solvation = -131.065401 kcal Electronic energy + Delta-G solvation = -28421.600415 eV Core-core repulsion = 24529.467327 eV Total energy + Delta-G solvation = -3892.133088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84854 -39.73538 -38.49011 -37.06476 -36.00264 -35.95058 -35.26661 -32.12636 -31.95774 -31.54853 -29.49344 -27.23448 -26.98493 -24.94310 -23.76178 -23.07885 -22.84372 -21.00916 -20.54167 -19.69481 -18.85260 -18.04210 -17.81739 -17.11289 -16.87652 -16.53154 -16.19377 -15.81543 -15.67594 -15.55470 -15.43876 -15.16808 -14.62926 -14.48730 -14.47029 -14.03195 -13.63837 -13.40671 -13.39965 -13.31495 -13.25366 -13.15786 -13.03593 -12.88836 -12.78255 -12.68091 -12.45782 -12.15039 -12.04918 -11.99200 -11.81897 -11.61858 -11.52108 -11.27430 -11.09706 -10.98473 -10.13144 -9.81759 -9.79443 -9.29685 -6.60812 -0.72126 0.18361 0.70935 1.48388 1.56397 1.77398 1.86323 2.27532 2.45175 2.61484 2.73625 3.17449 3.27097 3.62465 3.68626 3.91288 4.03058 4.05581 4.12774 4.22644 4.26133 4.29288 4.34543 4.46615 4.52791 4.60111 4.69644 4.70111 4.73582 4.81645 4.88220 4.88702 4.94781 5.11831 5.14154 5.16254 5.19954 5.30704 5.36009 5.45029 5.49190 5.53943 5.64753 5.67212 5.97263 6.10563 6.21930 6.58157 6.75127 7.92039 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.003252 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.662791 B = 8608.145574 C = 8905.742264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.066 0.934 5 C 0.082 3.918 6 N -0.992 5.992 7 S 2.710 3.290 8 O -0.980 6.980 9 O -0.984 6.984 10 C -0.630 4.630 11 C -0.162 4.162 12 C -0.101 4.101 13 C -0.194 4.194 14 C 0.052 3.948 15 C -0.551 4.551 16 H 0.078 0.922 17 C 0.004 3.996 18 N -0.813 5.813 19 Si 1.122 2.878 20 H -0.261 1.261 21 H -0.267 1.267 22 H -0.264 1.264 23 C -0.144 4.144 24 C 0.080 3.920 25 C 0.083 3.917 26 H 0.140 0.860 27 C -0.188 4.188 28 O -0.372 6.372 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.284 0.716 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 -6.290 -2.252 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.084 0.916 5 C -0.043 4.043 6 N -0.832 5.832 7 S 2.804 3.196 8 O -0.970 6.970 9 O -0.975 6.975 10 C -0.718 4.718 11 C -0.183 4.183 12 C -0.120 4.120 13 C -0.214 4.214 14 C 0.048 3.952 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.436 5.436 19 Si 0.938 3.062 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.165 4.165 24 C -0.045 4.045 25 C 0.024 3.976 26 H 0.158 0.842 27 C -0.245 4.245 28 O -0.290 6.290 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.333 -5.715 -2.245 17.449 hybrid contribution -0.282 -0.125 0.781 0.840 sum -16.615 -5.840 -1.464 17.672 Atomic orbital electron populations 1.21670 0.94393 1.02251 1.01920 1.21569 0.97396 0.92378 1.03902 1.22576 0.91823 0.95761 0.88027 0.91580 1.22432 0.96424 0.81277 1.04190 1.57562 1.60437 1.24665 1.40529 1.01165 0.72944 0.72527 0.72920 1.93478 1.86253 1.75302 1.42014 1.93489 1.86309 1.31030 1.86651 1.30445 1.23798 1.05228 1.12377 1.20438 0.96418 0.97347 1.04063 1.21096 0.94869 0.99039 0.96954 1.21468 1.00815 0.95733 1.03349 1.18086 0.92839 0.92569 0.91661 1.20852 0.95053 1.21592 1.20421 0.90369 1.28524 0.95970 0.91771 1.04932 1.70546 1.41445 1.29569 1.02055 0.82950 0.75250 0.77724 0.70237 1.18530 1.19201 1.18895 1.20799 0.97434 0.98471 0.99795 1.22337 0.96788 0.97629 0.87781 1.22534 0.91474 0.82419 1.01168 0.84212 1.22449 1.02442 1.01331 0.98322 1.87976 1.79579 1.23540 1.37953 0.91439 0.92806 0.92764 0.90598 0.88928 0.89604 0.87912 0.84838 0.85039 0.88127 0.90423 0.87119 0.88374 0.89767 0.93812 0.90704 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.81 71.98 0.71 -1.32 16 2 C -0.11 -1.78 5.64 30.59 0.17 -1.61 16 3 C 0.08 1.58 2.39 30.70 0.07 1.65 16 4 H 0.07 1.38 6.25 -2.39 -0.01 1.36 16 5 C 0.08 1.95 6.00 86.36 0.52 2.47 16 6 N -0.99 -28.46 2.87 -512.36 -1.47 -29.93 16 7 S 2.71 100.14 5.74 -56.49 -0.32 99.82 16 8 O -0.98 -38.07 15.89 -128.00 -2.03 -40.11 16 9 O -0.98 -40.47 15.88 -128.00 -2.03 -42.50 16 10 C -0.63 -27.40 5.97 22.22 0.13 -27.27 16 11 C -0.16 -6.82 9.53 22.46 0.21 -6.61 16 12 C -0.10 -4.40 10.02 22.22 0.22 -4.17 16 13 C -0.19 -9.71 7.96 22.73 0.18 -9.53 16 14 C 0.05 2.75 5.30 -21.29 -0.11 2.63 16 15 C -0.55 -29.18 8.99 23.46 0.21 -28.97 16 16 H 0.08 4.02 7.96 -2.91 -0.02 4.00 16 17 C 0.00 0.22 4.93 85.26 0.42 0.64 16 18 N -0.81 -43.08 12.31 21.83 0.27 -42.81 16 19 Si 1.12 41.93 30.00 68.60 2.06 43.99 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 21 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 23 C -0.14 -7.05 9.26 22.73 0.21 -6.84 16 24 C 0.08 1.99 6.06 86.21 0.52 2.51 16 25 C 0.08 1.67 3.92 30.56 0.12 1.79 16 26 H 0.14 2.09 8.14 -2.38 -0.02 2.07 16 27 C -0.19 -3.77 8.80 71.98 0.63 -3.14 16 28 O -0.37 -7.95 9.77 -148.98 -1.46 -9.40 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 2.41 6.95 -2.39 -0.02 2.39 16 36 H 0.13 4.86 7.60 -2.91 -0.02 4.83 16 37 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.10 5.19 6.49 -2.91 -0.02 5.17 16 39 H 0.28 15.67 6.70 -92.71 -0.62 15.05 16 40 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 41 H 0.10 2.56 6.93 -2.39 -0.02 2.55 16 42 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.04 1.01 6.12 -2.39 -0.01 0.99 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -65.30 370.14 0.37 -64.93 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 1.13 Total: 33.77 kcal Atomic # 6 Polarization: -81.98 SS G_CDS: 4.22 Total: -77.76 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.20 Total: -72.74 kcal Atomic # 8 Polarization: -86.49 SS G_CDS: -5.52 Total: -92.01 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.06 Total: 43.99 kcal Atomic # 16 Polarization: 100.14 SS G_CDS: -0.32 Total: 99.82 kcal Total: -65.30 0.37 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619483075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.136 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds