Wall clock time and date at job start Tue Mar 31 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 H 1.09000 * 109.51762 * 305.10222 * 3 2 1 5 5 C 1.53293 * 109.51809 * 184.99903 * 3 2 1 6 6 N 1.47153 * 108.39013 * 187.77509 * 5 3 2 7 7 S 1.65598 * 120.98077 * 230.55792 * 6 5 3 8 8 O 1.42095 * 106.40396 * 23.51449 * 7 6 5 9 9 O 1.42103 * 106.40172 * 156.43643 * 7 6 5 10 10 C 1.76200 * 107.21897 * 269.97500 * 7 6 5 11 11 C 1.38655 * 119.87654 * 89.99952 * 10 7 6 12 12 C 1.38614 * 120.50298 * 179.97438 * 11 10 7 13 13 C 1.37634 * 120.24672 * 0.02562 * 12 11 10 14 14 C 1.40703 * 119.74697 * 359.97438 * 13 12 11 15 15 C 1.41396 * 120.24555 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99695 * 155.23321 * 15 14 13 17 17 C 1.39950 * 119.99728 * 335.23348 * 15 14 13 18 18 N 1.30818 * 120.00407 * 342.28670 * 17 15 14 19 19 Si 1.86799 * 119.99738 * 162.28331 * 17 15 14 20 20 H 1.48504 * 109.47047 * 89.99747 * 19 17 15 21 21 H 1.48499 * 109.47368 * 210.00254 * 19 17 15 22 22 H 1.48508 * 109.47310 * 330.00454 * 19 17 15 23 23 C 1.37596 * 119.87576 * 269.72785 * 10 7 6 24 24 C 1.47145 * 118.03269 * 50.53124 * 6 5 3 25 25 C 1.53286 * 108.39180 * 309.46781 * 24 6 5 26 26 H 1.08996 * 109.52052 * 172.27517 * 25 24 6 27 27 C 1.53002 * 109.51227 * 292.37947 * 25 24 6 28 28 O 1.42962 * 109.51311 * 65.25106 * 3 2 1 29 29 H 1.09005 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 299.99739 * 1 2 3 31 31 H 1.08999 * 109.47166 * 59.99887 * 1 2 3 32 32 H 1.09000 * 109.47052 * 239.99760 * 2 1 3 33 33 H 1.08999 * 109.47166 * 120.00113 * 2 1 3 34 34 H 1.09000 * 109.68174 * 68.04935 * 5 3 2 35 35 H 1.09000 * 109.71061 * 307.51773 * 5 3 2 36 36 H 1.08001 * 119.74657 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87685 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.12936 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00268 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.12800 * 0.02562 * 23 10 7 41 41 H 1.09003 * 109.68258 * 189.73863 * 24 6 5 42 42 H 1.09006 * 109.67845 * 69.19452 * 24 6 5 43 43 H 1.09000 * 109.47216 * 59.99631 * 27 25 24 44 44 H 1.08999 * 109.46899 * 299.99849 * 27 25 24 45 45 H 1.08999 * 109.47353 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9827 -0.8405 5 6 3.5677 1.4454 -0.1259 6 7 4.0465 2.8238 0.0644 7 16 5.0844 3.5231 -1.0200 8 8 4.9081 2.8304 -2.2481 9 8 4.9152 4.9279 -0.8888 10 6 6.7227 3.1665 -0.4785 11 6 7.3615 2.0178 -0.9200 12 6 8.6505 1.7249 -0.5026 13 6 9.3105 2.5734 0.3569 14 6 8.6722 3.7419 0.8115 15 6 9.3403 4.6207 1.6951 16 1 9.0597 5.6628 1.7348 17 6 10.3650 4.1399 2.5181 18 7 10.4805 2.8552 2.7362 19 14 11.5680 5.3327 3.3051 20 1 11.0457 5.7623 4.6272 21 1 12.8817 4.6642 3.4853 22 1 11.7329 6.5201 2.4285 23 6 7.3655 4.0319 0.3766 24 6 3.5753 3.5625 1.2466 25 6 2.0472 3.4565 1.3057 26 1 1.6889 3.8786 2.2446 27 6 1.4358 4.2261 0.1332 28 8 1.6673 2.0807 1.2237 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8552 1.0903 -1.1155 35 1 4.0007 0.7979 0.6365 36 1 6.8512 1.3467 -1.5949 37 1 9.1386 0.8276 -0.8532 38 1 10.3146 2.3431 0.6812 39 1 11.1905 2.5221 3.3069 40 1 6.8676 4.9282 0.7162 41 1 3.8678 4.6095 1.1659 42 1 4.0086 3.1282 2.1476 43 1 1.7930 3.8024 -0.8054 44 1 1.7295 5.2740 0.1937 45 1 0.3493 4.1500 0.1756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619483077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:32 Heat of formation + Delta-G solvation = -107.654735 kcal Electronic energy + Delta-G solvation = -28421.661202 eV Core-core repulsion = 24530.543277 eV Total energy + Delta-G solvation = -3891.117925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.81494 -37.66440 -36.82306 -35.39087 -34.85918 -34.33997 -33.87428 -31.19970 -30.10812 -29.82395 -28.51123 -25.89911 -25.51027 -23.93972 -22.10100 -21.78210 -21.01471 -19.93850 -18.73185 -17.99337 -17.26546 -16.77997 -16.03782 -15.78925 -15.52499 -15.20302 -14.77032 -14.65644 -14.41644 -14.29091 -13.80433 -13.63631 -13.49025 -13.38411 -12.61619 -12.42852 -12.28075 -12.19905 -11.96598 -11.94722 -11.86573 -11.66684 -11.45298 -11.38762 -11.36071 -11.23624 -11.20325 -11.04955 -11.03575 -10.93153 -10.64808 -10.22919 -10.12672 -9.79982 -9.59524 -9.37281 -8.63599 -8.05642 -7.73295 -6.95561 -4.56429 0.89289 2.15737 2.60754 2.98198 2.99766 3.06614 3.35949 3.65660 3.80594 4.19989 4.37912 4.51209 4.71056 4.81570 4.91227 4.99350 5.00548 5.16098 5.18106 5.29466 5.34980 5.40251 5.52205 5.60279 5.70216 5.76695 5.82035 5.84018 5.90653 5.98388 6.01458 6.11071 6.13638 6.19788 6.23310 6.56483 6.61948 6.73500 6.88282 7.01420 7.17376 7.18830 7.34873 7.69553 7.77683 7.91187 8.37146 8.64018 8.68786 10.00005 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.003310 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.193095 B = 8457.227564 C = 8642.252019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.077 3.923 4 H 0.067 0.933 5 C 0.091 3.909 6 N -1.000 6.000 7 S 2.685 3.315 8 O -0.973 6.973 9 O -0.967 6.967 10 C -0.631 4.631 11 C -0.149 4.149 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.093 3.907 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.126 4.126 24 C 0.090 3.910 25 C 0.080 3.920 26 H 0.113 0.887 27 C -0.187 4.187 28 O -0.368 6.368 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.284 0.716 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -3.498 -1.135 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.018 3.982 4 H 0.085 0.915 5 C -0.035 4.035 6 N -0.837 5.837 7 S 2.784 3.216 8 O -0.963 6.963 9 O -0.958 6.958 10 C -0.723 4.723 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.138 4.138 14 C 0.089 3.911 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.419 5.419 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.147 4.147 24 C -0.036 4.036 25 C 0.021 3.979 26 H 0.131 0.869 27 C -0.244 4.244 28 O -0.287 6.287 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.965 -3.269 -1.600 14.431 hybrid contribution 1.469 0.233 0.748 1.665 sum -12.497 -3.036 -0.851 12.888 Atomic orbital electron populations 1.21693 0.95150 1.01413 1.02233 1.21522 0.96776 0.93983 1.03135 1.22481 0.93305 0.94305 0.88134 0.91513 1.22117 0.94937 0.82743 1.03694 1.57812 1.62191 1.23518 1.40189 1.01819 0.73952 0.73009 0.72845 1.93493 1.86515 1.75160 1.41149 1.93511 1.86454 1.29538 1.86281 1.29776 1.21668 1.06223 1.14672 1.20058 0.96949 0.96477 1.03514 1.20807 0.95040 0.98999 0.99099 1.21633 0.99944 0.95887 0.96331 1.17679 0.90134 0.92423 0.90856 1.19608 1.14639 0.96883 1.17833 0.89906 1.25936 0.97286 0.95680 0.95383 1.69773 1.28673 1.14348 1.29067 0.86259 0.79342 0.81108 0.79805 1.19298 1.19976 1.18279 1.20755 0.95611 0.98539 0.99813 1.22142 0.94867 0.98072 0.88525 1.22494 0.93335 0.82376 0.99702 0.86935 1.22421 1.01292 1.01439 0.99251 1.87964 1.79749 1.23320 1.37694 0.92802 0.91954 0.92991 0.90270 0.90773 0.88148 0.90474 0.87719 0.88344 0.85753 0.90547 0.87133 0.87841 0.90304 0.92263 0.90816 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.81 37.15 0.36 -0.90 16 2 C -0.12 -1.10 5.64 -26.74 -0.15 -1.25 16 3 C 0.08 0.90 2.39 -26.58 -0.06 0.84 16 4 H 0.07 0.79 6.25 -51.93 -0.32 0.46 16 5 C 0.09 1.22 6.00 -3.53 -0.02 1.20 16 6 N -1.00 -15.47 2.86 -113.07 -0.32 -15.79 16 7 S 2.69 51.08 5.74 -107.50 -0.62 50.46 16 8 O -0.97 -19.65 15.89 -57.17 -0.91 -20.56 16 9 O -0.97 -19.92 15.88 -57.17 -0.91 -20.83 16 10 C -0.63 -13.91 5.97 -39.66 -0.24 -14.14 16 11 C -0.15 -3.26 9.53 -39.29 -0.37 -3.63 16 12 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 13 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 14 C 0.09 2.39 5.57 -106.82 -0.60 1.79 16 15 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 16 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.79 -19.48 10.97 55.55 0.61 -18.87 16 19 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.13 -3.02 9.26 -38.87 -0.36 -3.38 16 24 C 0.09 1.23 6.09 -3.54 -0.02 1.21 16 25 C 0.08 0.93 3.93 -26.58 -0.10 0.83 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 27 C -0.19 -2.10 8.81 37.16 0.33 -1.77 16 28 O -0.37 -4.57 9.77 -35.23 -0.34 -4.91 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.33 6.94 -51.93 -0.36 0.96 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 37 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 39 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 40 H 0.11 2.52 7.60 -52.48 -0.40 2.12 16 41 H 0.10 1.43 6.94 -51.93 -0.36 1.07 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.74 6.11 -51.93 -0.32 0.42 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -29.66 370.93 -11.00 -40.67 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.67 Total: 7.35 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: -2.40 Total: -35.96 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.29 Total: -34.66 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -2.16 Total: -46.31 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.62 Total: 50.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.66 -11.00 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619483077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.990 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds