Wall clock time and date at job start Tue Mar 31 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47328 * 2 1 4 4 H 1.09000 * 109.51762 * 305.10222 * 3 2 1 5 5 C 1.53293 * 109.51809 * 184.99903 * 3 2 1 6 6 N 1.47153 * 108.39013 * 187.77509 * 5 3 2 7 7 S 1.65598 * 120.98077 * 230.55792 * 6 5 3 8 8 O 1.42095 * 106.40396 * 23.51449 * 7 6 5 9 9 O 1.42103 * 106.40172 * 156.43643 * 7 6 5 10 10 C 1.76200 * 107.21897 * 269.97500 * 7 6 5 11 11 C 1.38655 * 119.87654 * 89.99952 * 10 7 6 12 12 C 1.38614 * 120.50298 * 179.97438 * 11 10 7 13 13 C 1.37634 * 120.24672 * 0.02562 * 12 11 10 14 14 C 1.40703 * 119.74697 * 359.97438 * 13 12 11 15 15 C 1.41396 * 120.24555 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99695 * 155.23321 * 15 14 13 17 17 C 1.39950 * 119.99728 * 335.23348 * 15 14 13 18 18 N 1.30818 * 120.00407 * 342.28670 * 17 15 14 19 19 Si 1.86799 * 119.99738 * 162.28331 * 17 15 14 20 20 H 1.48504 * 109.47047 * 89.99747 * 19 17 15 21 21 H 1.48499 * 109.47368 * 210.00254 * 19 17 15 22 22 H 1.48508 * 109.47310 * 330.00454 * 19 17 15 23 23 C 1.37596 * 119.87576 * 269.72785 * 10 7 6 24 24 C 1.47145 * 118.03269 * 50.53124 * 6 5 3 25 25 C 1.53286 * 108.39180 * 309.46781 * 24 6 5 26 26 H 1.08996 * 109.52052 * 172.27517 * 25 24 6 27 27 C 1.53002 * 109.51227 * 292.37947 * 25 24 6 28 28 O 1.42962 * 109.51311 * 65.25106 * 3 2 1 29 29 H 1.09005 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 299.99739 * 1 2 3 31 31 H 1.08999 * 109.47166 * 59.99887 * 1 2 3 32 32 H 1.09000 * 109.47052 * 239.99760 * 2 1 3 33 33 H 1.08999 * 109.47166 * 120.00113 * 2 1 3 34 34 H 1.09000 * 109.68174 * 68.04935 * 5 3 2 35 35 H 1.09000 * 109.71061 * 307.51773 * 5 3 2 36 36 H 1.08001 * 119.74657 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.87685 * 180.02562 * 12 11 10 38 38 H 1.08000 * 120.12936 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00268 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.12800 * 0.02562 * 23 10 7 41 41 H 1.09003 * 109.68258 * 189.73863 * 24 6 5 42 42 H 1.09006 * 109.67845 * 69.19452 * 24 6 5 43 43 H 1.09000 * 109.47216 * 59.99631 * 27 25 24 44 44 H 1.08999 * 109.46899 * 299.99849 * 27 25 24 45 45 H 1.08999 * 109.47353 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9827 -0.8405 5 6 3.5677 1.4454 -0.1259 6 7 4.0465 2.8238 0.0644 7 16 5.0844 3.5231 -1.0200 8 8 4.9081 2.8304 -2.2481 9 8 4.9152 4.9279 -0.8888 10 6 6.7227 3.1665 -0.4785 11 6 7.3615 2.0178 -0.9200 12 6 8.6505 1.7249 -0.5026 13 6 9.3105 2.5734 0.3569 14 6 8.6722 3.7419 0.8115 15 6 9.3403 4.6207 1.6951 16 1 9.0597 5.6628 1.7348 17 6 10.3650 4.1399 2.5181 18 7 10.4805 2.8552 2.7362 19 14 11.5680 5.3327 3.3051 20 1 11.0457 5.7623 4.6272 21 1 12.8817 4.6642 3.4853 22 1 11.7329 6.5201 2.4285 23 6 7.3655 4.0319 0.3766 24 6 3.5753 3.5625 1.2466 25 6 2.0472 3.4565 1.3057 26 1 1.6889 3.8786 2.2446 27 6 1.4358 4.2261 0.1332 28 8 1.6673 2.0807 1.2237 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8552 1.0903 -1.1155 35 1 4.0007 0.7979 0.6365 36 1 6.8512 1.3467 -1.5949 37 1 9.1386 0.8276 -0.8532 38 1 10.3146 2.3431 0.6812 39 1 11.1905 2.5221 3.3069 40 1 6.8676 4.9282 0.7162 41 1 3.8678 4.6095 1.1659 42 1 4.0086 3.1282 2.1476 43 1 1.7930 3.8024 -0.8054 44 1 1.7295 5.2740 0.1937 45 1 0.3493 4.1500 0.1756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619483077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:31 Heat of formation + Delta-G solvation = -125.210224 kcal Electronic energy + Delta-G solvation = -28422.422465 eV Core-core repulsion = 24530.543277 eV Total energy + Delta-G solvation = -3891.879188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80386 -39.47543 -38.41671 -36.99355 -35.95209 -35.69429 -35.23452 -32.08931 -31.94572 -31.62115 -29.46602 -27.37611 -26.93806 -24.90986 -23.69614 -22.85975 -22.79269 -20.97038 -20.26846 -19.47575 -18.73733 -17.80007 -17.77091 -17.13944 -16.88771 -16.64577 -16.38439 -15.84633 -15.55344 -15.46297 -15.22301 -15.07812 -14.60746 -14.46106 -14.33596 -13.74623 -13.58207 -13.38493 -13.34343 -13.26961 -13.13192 -13.06503 -13.00537 -12.86877 -12.83854 -12.64415 -12.63716 -12.23914 -12.12486 -12.02430 -11.79435 -11.60054 -11.42642 -11.23432 -11.15739 -11.04605 -9.95415 -9.72155 -9.58953 -8.75563 -6.47762 -0.63104 0.36373 0.81404 1.36421 1.43201 1.51388 1.93493 2.16154 2.53098 2.68700 2.76302 3.24423 3.46919 3.66869 3.72016 3.94008 4.06409 4.08711 4.25159 4.26592 4.29104 4.37182 4.39347 4.48631 4.63174 4.72883 4.76731 4.80146 4.84687 4.87212 4.90763 4.95698 5.02332 5.14233 5.16634 5.17911 5.22702 5.32669 5.37175 5.48398 5.50767 5.53745 5.85109 5.90679 6.06942 6.24641 6.49422 6.76997 6.81549 8.22495 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.003310 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.193095 B = 8457.227564 C = 8642.252019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.068 0.932 5 C 0.082 3.918 6 N -0.994 5.994 7 S 2.710 3.290 8 O -0.982 6.982 9 O -0.984 6.984 10 C -0.640 4.640 11 C -0.152 4.152 12 C -0.122 4.122 13 C -0.142 4.142 14 C 0.064 3.936 15 C -0.497 4.497 16 H 0.079 0.921 17 C 0.039 3.961 18 N -0.820 5.820 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.146 4.146 24 C 0.080 3.920 25 C 0.083 3.917 26 H 0.139 0.861 27 C -0.187 4.187 28 O -0.373 6.373 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 -4.141 -0.908 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.086 0.914 5 C -0.043 4.043 6 N -0.833 5.833 7 S 2.805 3.195 8 O -0.972 6.972 9 O -0.975 6.975 10 C -0.729 4.729 11 C -0.173 4.173 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.061 3.939 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.167 4.167 24 C -0.045 4.045 25 C 0.024 3.976 26 H 0.156 0.844 27 C -0.244 4.244 28 O -0.292 6.292 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.167 -3.929 -1.376 15.728 hybrid contribution 1.727 0.357 0.638 1.875 sum -13.440 -3.572 -0.738 13.926 Atomic orbital electron populations 1.21666 0.94342 1.02240 1.01935 1.21568 0.97430 0.92436 1.03855 1.22568 0.91811 0.95721 0.88031 0.91447 1.22409 0.96417 0.81390 1.04096 1.57579 1.60741 1.24648 1.40318 1.01119 0.72972 0.72521 0.72854 1.93472 1.86336 1.75309 1.42075 1.93482 1.86356 1.30951 1.86679 1.30334 1.23760 1.05546 1.13283 1.20447 0.96804 0.96708 1.03307 1.21145 0.95380 0.99456 0.98106 1.21645 0.99954 0.96705 0.97892 1.18044 0.91115 0.93195 0.91577 1.19854 1.16566 0.96932 1.19258 0.90242 1.26744 0.98233 0.97369 0.95384 1.69806 1.29382 1.15861 1.29528 0.85191 0.77130 0.78576 0.78818 1.18439 1.18798 1.18452 1.20842 0.95467 0.99309 1.01081 1.22394 0.96736 0.97666 0.87678 1.22606 0.91455 0.82394 1.01156 0.84364 1.22435 1.02389 1.01323 0.98272 1.87973 1.79556 1.23609 1.38021 0.91452 0.92811 0.92711 0.88895 0.90754 0.87867 0.89945 0.85191 0.85468 0.86844 0.89673 0.87146 0.88278 0.90131 0.93730 0.90648 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.81 71.98 0.71 -1.43 16 2 C -0.11 -1.91 5.64 30.59 0.17 -1.74 16 3 C 0.08 1.68 2.39 30.69 0.07 1.75 16 4 H 0.07 1.46 6.25 -2.39 -0.01 1.44 16 5 C 0.08 2.07 6.00 86.35 0.52 2.59 16 6 N -0.99 -29.81 2.86 -511.64 -1.46 -31.27 16 7 S 2.71 101.83 5.74 -56.49 -0.32 101.50 16 8 O -0.98 -38.53 15.89 -128.00 -2.03 -40.57 16 9 O -0.98 -40.57 15.88 -128.00 -2.03 -42.60 16 10 C -0.64 -28.35 5.97 22.22 0.13 -28.21 16 11 C -0.15 -6.55 9.53 22.46 0.21 -6.34 16 12 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 13 C -0.14 -7.27 8.70 22.73 0.20 -7.07 16 14 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 15 C -0.50 -26.26 9.05 23.46 0.21 -26.05 16 16 H 0.08 4.07 7.91 -2.91 -0.02 4.04 16 17 C 0.04 1.87 5.14 85.26 0.44 2.31 16 18 N -0.82 -40.96 10.97 21.83 0.24 -40.72 16 19 Si 0.98 36.84 29.59 68.60 2.03 38.87 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 23 C -0.15 -7.21 9.26 22.73 0.21 -7.00 16 24 C 0.08 2.13 6.09 86.35 0.53 2.66 16 25 C 0.08 1.77 3.93 30.69 0.12 1.89 16 26 H 0.14 2.24 8.14 -2.39 -0.02 2.23 16 27 C -0.19 -3.87 8.81 71.98 0.63 -3.23 16 28 O -0.37 -8.44 9.77 -148.98 -1.46 -9.90 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.89 7.83 -2.39 -0.02 0.87 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 2.55 6.94 -2.39 -0.02 2.53 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 37 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.11 5.93 6.18 -2.91 -0.02 5.91 16 39 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 40 H 0.11 5.27 7.60 -2.91 -0.02 5.24 16 41 H 0.10 2.71 6.94 -2.39 -0.02 2.69 16 42 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.04 1.05 6.11 -2.39 -0.01 1.03 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.07 370.93 0.21 -63.86 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.99 Total: 32.65 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 4.26 Total: -71.82 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.22 Total: -71.99 kcal Atomic # 8 Polarization: -87.55 SS G_CDS: -5.52 Total: -93.07 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 101.83 SS G_CDS: -0.32 Total: 101.50 kcal Total: -64.07 0.21 -63.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619483077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.348 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds