Wall clock time and date at job start Tue Mar 31 2020 23:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00654 * 2 1 3 5 5 C 1.53001 * 109.47082 * 184.99843 * 4 2 1 6 6 H 1.08996 * 110.45368 * 52.39356 * 5 4 2 7 7 C 1.54505 * 110.50816 * 174.99950 * 5 4 2 8 8 C 1.54478 * 104.06188 * 118.64571 * 7 5 4 9 9 O 1.44420 * 104.80383 * 23.98222 * 8 7 5 10 10 C 1.44428 * 105.27349 * 319.48156 * 9 8 7 11 11 N 1.46509 * 109.47044 * 240.00678 * 2 1 3 12 12 S 1.65595 * 120.00013 * 94.99875 * 11 2 1 13 13 O 1.42097 * 106.40391 * 311.45738 * 12 11 2 14 14 O 1.42108 * 106.39934 * 178.53945 * 12 11 2 15 15 C 1.76195 * 107.22041 * 65.00049 * 12 11 2 16 16 C 1.38662 * 119.87657 * 89.99472 * 15 12 11 17 17 C 1.38613 * 120.50023 * 179.72377 * 16 15 12 18 18 C 1.37639 * 120.25034 * 0.28250 * 17 16 15 19 19 C 1.40693 * 119.74415 * 359.97438 * 18 17 16 20 20 C 1.41391 * 120.24543 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00306 * 155.16774 * 20 19 18 22 22 C 1.39944 * 119.99916 * 335.16661 * 20 19 18 23 23 N 1.30831 * 119.99982 * 342.35386 * 22 20 19 24 24 Si 1.86799 * 120.00181 * 162.35947 * 22 20 19 25 25 H 1.48494 * 109.47329 * 59.99943 * 24 22 20 26 26 H 1.48505 * 109.47096 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46963 * 299.99610 * 24 22 20 28 28 C 1.37596 * 119.87923 * 270.28120 * 15 12 11 29 29 H 1.08999 * 109.47408 * 299.99753 * 1 2 3 30 30 H 1.09003 * 109.47322 * 59.99458 * 1 2 3 31 31 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46595 * 304.99965 * 4 2 1 33 33 H 1.09000 * 109.47147 * 64.99911 * 4 2 1 34 34 H 1.09006 * 110.51131 * 237.29081 * 7 5 4 35 35 H 1.09000 * 110.51542 * 359.86021 * 7 5 4 36 36 H 1.09009 * 110.36828 * 142.80850 * 8 7 5 37 37 H 1.08998 * 110.37459 * 265.14071 * 8 7 5 38 38 H 1.09001 * 110.37843 * 281.69054 * 10 9 8 39 39 H 1.09000 * 110.37225 * 159.34608 * 10 9 8 40 40 H 0.96999 * 119.99436 * 274.99685 * 11 2 1 41 41 H 1.08004 * 119.74813 * 0.02562 * 16 15 12 42 42 H 1.08000 * 119.86981 * 180.25352 * 17 16 15 43 43 H 1.08001 * 120.12381 * 179.97438 * 18 17 16 44 44 H 0.96995 * 119.99929 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12645 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3135 6 1 3.8772 0.4268 1.2226 7 6 4.0957 -1.2252 2.6293 8 6 5.0045 -2.3846 2.1643 9 8 5.4013 -2.0271 0.8225 10 6 4.2157 -1.4757 0.2092 11 7 2.0183 -0.6905 -1.1963 12 16 2.4121 0.1774 -2.5505 13 8 1.3246 1.0595 -2.7922 14 8 2.8776 -0.7632 -3.5086 15 6 3.7927 1.1912 -2.1372 16 6 5.0809 0.7118 -2.3197 17 6 6.1763 1.5004 -2.0043 18 6 5.9957 2.7682 -1.4999 19 6 4.6932 3.2631 -1.3055 20 6 4.4954 4.5642 -0.7886 21 1 3.5800 5.0965 -1.0013 22 6 5.4858 5.1623 -0.0013 23 7 6.4209 4.4272 0.5436 24 14 5.4726 7.0102 0.2719 25 1 4.2025 7.4038 0.9329 26 1 6.6186 7.3911 1.1361 27 1 5.5859 7.7046 -1.0359 28 6 3.5884 2.4534 -1.6289 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1368 33 1 1.7517 -1.7716 1.2054 34 1 4.6727 -0.4880 3.1877 35 1 3.2717 -1.6023 3.2350 36 1 5.8790 -2.4637 2.8102 37 1 4.4497 -3.3228 2.1588 38 1 3.5398 -2.2744 -0.0961 39 1 4.4841 -0.8566 -0.6468 40 1 2.1110 -1.6561 -1.1950 41 1 5.2319 -0.2818 -2.7153 42 1 7.1752 1.1182 -2.1544 43 1 6.8507 3.3808 -1.2545 44 1 7.1075 4.8418 1.0890 45 1 2.5842 2.8233 -1.4835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:14 Heat of formation + Delta-G solvation = -115.748030 kcal Electronic energy + Delta-G solvation = -29147.056453 eV Core-core repulsion = 25255.587576 eV Total energy + Delta-G solvation = -3891.468877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.52872 -37.67221 -36.97759 -36.47083 -35.30138 -33.87040 -32.64185 -30.14044 -30.05516 -29.84428 -29.19749 -25.87773 -25.47883 -22.78482 -21.92321 -21.43265 -20.95541 -20.30218 -19.14789 -17.95570 -17.06998 -16.62095 -15.97707 -15.67942 -15.53762 -15.28524 -15.02296 -14.72524 -14.57711 -13.69227 -13.55318 -13.43183 -13.37542 -13.25923 -12.75736 -12.58250 -12.34249 -12.06747 -11.89966 -11.68528 -11.55122 -11.47681 -11.38717 -11.36939 -11.33637 -11.13143 -11.02459 -10.90836 -10.64590 -10.59506 -10.51866 -10.40718 -9.80933 -9.69227 -9.56938 -9.35031 -9.16005 -8.05001 -7.70381 -6.94135 -4.55493 1.01371 2.17174 2.62579 2.98239 3.00041 3.07187 3.54963 3.81114 4.14604 4.22352 4.41460 4.55657 4.75913 4.95269 4.99758 5.05815 5.15907 5.29593 5.35013 5.37265 5.41798 5.58126 5.64765 5.70821 5.79307 5.81303 5.90091 5.96950 6.03682 6.06031 6.16211 6.17108 6.34198 6.35026 6.47526 6.64214 6.74758 6.83029 6.98945 7.01920 7.17655 7.23147 7.36294 7.72509 7.79049 7.92773 8.38491 8.65397 8.70070 10.00954 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.004997 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.412405 B = 5601.600793 C = 6486.093769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.149 3.851 3 H 0.095 0.905 4 C -0.112 4.112 5 C -0.123 4.123 6 H 0.095 0.905 7 C -0.151 4.151 8 C 0.043 3.957 9 O -0.374 6.374 10 C 0.046 3.954 11 N -1.118 6.118 12 S 2.682 3.318 13 O -0.970 6.970 14 O -0.977 6.977 15 C -0.632 4.632 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.094 3.906 20 C -0.461 4.461 21 H 0.082 0.918 22 C 0.076 3.924 23 N -0.792 5.792 24 Si 0.910 3.090 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.128 4.128 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.411 0.589 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.284 0.716 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -8.997 5.834 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.113 0.887 4 C -0.151 4.151 5 C -0.142 4.142 6 H 0.114 0.886 7 C -0.188 4.188 8 C -0.034 4.034 9 O -0.292 6.292 10 C -0.030 4.030 11 N -0.877 5.877 12 S 2.778 3.222 13 O -0.960 6.960 14 O -0.967 6.967 15 C -0.724 4.724 16 C -0.166 4.166 17 C -0.136 4.136 18 C -0.135 4.135 19 C 0.091 3.909 20 C -0.490 4.490 21 H 0.100 0.900 22 C -0.142 4.142 23 N -0.417 5.417 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.245 0.755 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.095 0.905 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.654 -8.876 5.097 11.693 hybrid contribution 0.568 0.741 0.860 1.270 sum -5.086 -8.135 5.957 11.293 Atomic orbital electron populations 1.22308 0.95139 1.02240 1.03191 1.20816 0.94039 0.96854 0.84065 0.88730 1.21941 0.94583 1.00956 0.97609 1.22579 0.95099 1.02186 0.94317 0.88618 1.22999 0.99619 0.98376 0.97853 1.23360 0.98504 0.96540 0.84960 1.89167 1.32922 1.81878 1.25250 1.23844 0.86472 0.95636 0.97093 1.55865 1.82517 1.18898 1.30435 1.01868 0.74522 0.73411 0.72367 1.93527 1.52750 1.66202 1.83536 1.93528 1.82535 1.62707 1.57972 1.29725 1.13741 1.10253 1.18695 1.20043 0.91089 0.99368 1.06061 1.20803 0.96827 0.95445 1.00498 1.21634 0.98086 0.95048 0.98743 1.17649 0.90917 0.92591 0.89784 1.19574 1.03064 0.99269 1.27133 0.90003 1.25915 0.94180 1.00590 0.93522 1.69772 1.11735 1.37586 1.22645 0.86329 0.78824 0.82119 0.79331 1.18852 1.20268 1.18691 1.20757 0.98542 0.92134 1.03507 0.91659 0.90945 0.92469 0.90223 0.91309 0.90609 0.90762 0.89619 0.92868 0.92850 0.87965 0.75457 0.87607 0.88400 0.85848 0.90530 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.52 37.16 0.35 -1.55 16 2 C 0.15 1.89 2.77 -67.93 -0.19 1.70 16 3 H 0.09 1.38 7.20 -51.93 -0.37 1.00 16 4 C -0.11 -1.20 4.16 -26.73 -0.11 -1.31 16 5 C -0.12 -1.64 3.11 -89.05 -0.28 -1.92 16 6 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 7 C -0.15 -1.73 6.74 -25.17 -0.17 -1.90 16 8 C 0.04 0.52 7.63 37.93 0.29 0.81 16 9 O -0.37 -6.03 11.65 -35.23 -0.41 -6.44 16 10 C 0.05 0.68 5.54 37.93 0.21 0.89 16 11 N -1.12 -15.36 3.63 -4.89 -0.02 -15.38 16 12 S 2.68 48.99 5.63 -107.50 -0.61 48.38 16 13 O -0.97 -19.76 16.53 -57.17 -0.95 -20.70 16 14 O -0.98 -19.70 17.27 -57.17 -0.99 -20.68 16 15 C -0.63 -13.21 5.27 -39.66 -0.21 -13.42 16 16 C -0.14 -3.07 7.57 -39.29 -0.30 -3.36 16 17 C -0.12 -2.58 10.02 -39.66 -0.40 -2.98 16 18 C -0.12 -2.80 8.70 -38.87 -0.34 -3.14 16 19 C 0.09 2.33 5.57 -106.83 -0.60 1.74 16 20 C -0.46 -11.44 9.05 -37.74 -0.34 -11.78 16 21 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 22 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 23 N -0.79 -19.09 10.97 55.55 0.61 -18.48 16 24 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.13 -2.91 8.61 -38.87 -0.33 -3.25 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.95 7.64 -51.93 -0.40 0.55 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.68 7.73 -51.93 -0.40 0.28 16 36 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.66 6.32 -51.93 -0.33 0.33 16 39 H 0.10 1.72 4.98 -51.93 -0.26 1.46 16 40 H 0.41 4.67 7.22 -34.47 -0.25 4.42 16 41 H 0.11 2.09 7.57 -52.48 -0.40 1.69 16 42 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 43 H 0.12 3.08 6.18 -52.49 -0.32 2.75 16 44 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 45 H 0.11 2.40 7.61 -52.49 -0.40 2.00 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -29.71 367.67 -10.82 -40.52 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.47 Total: 12.32 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -2.50 Total: -37.76 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.59 Total: -33.86 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.34 Total: -47.83 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 48.99 SS G_CDS: -0.61 Total: 48.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.71 -10.82 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.225 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds