Wall clock time and date at job start Tue Mar 31 2020 23:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00654 * 2 1 3 5 5 C 1.53001 * 109.47082 * 184.99843 * 4 2 1 6 6 H 1.08996 * 110.45368 * 52.39356 * 5 4 2 7 7 C 1.54505 * 110.50816 * 174.99950 * 5 4 2 8 8 C 1.54478 * 104.06188 * 118.64571 * 7 5 4 9 9 O 1.44420 * 104.80383 * 23.98222 * 8 7 5 10 10 C 1.44428 * 105.27349 * 319.48156 * 9 8 7 11 11 N 1.46509 * 109.47044 * 240.00678 * 2 1 3 12 12 S 1.65595 * 120.00013 * 94.99875 * 11 2 1 13 13 O 1.42097 * 106.40391 * 311.45738 * 12 11 2 14 14 O 1.42108 * 106.39934 * 178.53945 * 12 11 2 15 15 C 1.76195 * 107.22041 * 65.00049 * 12 11 2 16 16 C 1.38662 * 119.87657 * 89.99472 * 15 12 11 17 17 C 1.38613 * 120.50023 * 179.72377 * 16 15 12 18 18 C 1.37639 * 120.25034 * 0.28250 * 17 16 15 19 19 C 1.40693 * 119.74415 * 359.97438 * 18 17 16 20 20 C 1.41391 * 120.24543 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00306 * 155.16774 * 20 19 18 22 22 C 1.39944 * 119.99916 * 335.16661 * 20 19 18 23 23 N 1.30831 * 119.99982 * 342.35386 * 22 20 19 24 24 Si 1.86799 * 120.00181 * 162.35947 * 22 20 19 25 25 H 1.48494 * 109.47329 * 59.99943 * 24 22 20 26 26 H 1.48505 * 109.47096 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46963 * 299.99610 * 24 22 20 28 28 C 1.37596 * 119.87923 * 270.28120 * 15 12 11 29 29 H 1.08999 * 109.47408 * 299.99753 * 1 2 3 30 30 H 1.09003 * 109.47322 * 59.99458 * 1 2 3 31 31 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46595 * 304.99965 * 4 2 1 33 33 H 1.09000 * 109.47147 * 64.99911 * 4 2 1 34 34 H 1.09006 * 110.51131 * 237.29081 * 7 5 4 35 35 H 1.09000 * 110.51542 * 359.86021 * 7 5 4 36 36 H 1.09009 * 110.36828 * 142.80850 * 8 7 5 37 37 H 1.08998 * 110.37459 * 265.14071 * 8 7 5 38 38 H 1.09001 * 110.37843 * 281.69054 * 10 9 8 39 39 H 1.09000 * 110.37225 * 159.34608 * 10 9 8 40 40 H 0.96999 * 119.99436 * 274.99685 * 11 2 1 41 41 H 1.08004 * 119.74813 * 0.02562 * 16 15 12 42 42 H 1.08000 * 119.86981 * 180.25352 * 17 16 15 43 43 H 1.08001 * 120.12381 * 179.97438 * 18 17 16 44 44 H 0.96995 * 119.99929 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12645 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3135 6 1 3.8772 0.4268 1.2226 7 6 4.0957 -1.2252 2.6293 8 6 5.0045 -2.3846 2.1643 9 8 5.4013 -2.0271 0.8225 10 6 4.2157 -1.4757 0.2092 11 7 2.0183 -0.6905 -1.1963 12 16 2.4121 0.1774 -2.5505 13 8 1.3246 1.0595 -2.7922 14 8 2.8776 -0.7632 -3.5086 15 6 3.7927 1.1912 -2.1372 16 6 5.0809 0.7118 -2.3197 17 6 6.1763 1.5004 -2.0043 18 6 5.9957 2.7682 -1.4999 19 6 4.6932 3.2631 -1.3055 20 6 4.4954 4.5642 -0.7886 21 1 3.5800 5.0965 -1.0013 22 6 5.4858 5.1623 -0.0013 23 7 6.4209 4.4272 0.5436 24 14 5.4726 7.0102 0.2719 25 1 4.2025 7.4038 0.9329 26 1 6.6186 7.3911 1.1361 27 1 5.5859 7.7046 -1.0359 28 6 3.5884 2.4534 -1.6289 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1368 33 1 1.7517 -1.7716 1.2054 34 1 4.6727 -0.4880 3.1877 35 1 3.2717 -1.6023 3.2350 36 1 5.8790 -2.4637 2.8102 37 1 4.4497 -3.3228 2.1588 38 1 3.5398 -2.2744 -0.0961 39 1 4.4841 -0.8566 -0.6468 40 1 2.1110 -1.6561 -1.1950 41 1 5.2319 -0.2818 -2.7153 42 1 7.1752 1.1182 -2.1544 43 1 6.8507 3.3808 -1.2545 44 1 7.1075 4.8418 1.0890 45 1 2.5842 2.8233 -1.4835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:13 Heat of formation + Delta-G solvation = -135.209319 kcal Electronic energy + Delta-G solvation = -29147.900358 eV Core-core repulsion = 25255.587576 eV Total energy + Delta-G solvation = -3892.312782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58246 -39.44661 -38.36650 -37.75276 -36.89825 -35.66768 -33.72291 -31.92882 -31.61419 -31.14705 -30.18890 -27.35840 -26.78784 -23.79289 -23.66717 -22.88304 -22.32695 -21.34874 -20.63108 -19.59463 -18.54617 -17.78447 -17.68093 -16.95110 -16.87451 -16.56204 -16.48651 -16.12170 -16.00809 -15.24189 -15.09551 -14.70518 -14.47874 -14.36277 -14.28438 -13.89042 -13.63810 -13.40378 -13.27833 -13.16526 -13.04118 -13.03466 -12.89610 -12.79958 -12.64107 -12.60709 -12.35795 -12.22370 -12.09953 -11.64498 -11.59378 -11.55131 -11.44334 -11.24097 -11.12111 -10.66222 -10.40232 -9.83990 -9.53017 -8.72013 -6.43840 -0.48727 0.41063 0.85410 1.37085 1.45967 1.49464 2.13641 2.17129 2.56129 2.78171 3.14273 3.46610 3.53111 3.56991 3.78993 4.01032 4.10093 4.23270 4.28920 4.30608 4.36688 4.38906 4.43216 4.55476 4.73944 4.81212 4.83974 4.88217 4.90386 4.93179 4.97832 5.01345 5.04983 5.10854 5.18568 5.20797 5.33061 5.41275 5.43996 5.48011 5.56441 5.90176 5.94298 5.96846 6.09323 6.17438 6.53138 6.81003 6.85484 8.25150 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.004997 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.412405 B = 5601.600793 C = 6486.093769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 H 0.068 0.932 4 C -0.102 4.102 5 C -0.124 4.124 6 H 0.052 0.948 7 C -0.145 4.145 8 C 0.037 3.963 9 O -0.409 6.409 10 C 0.039 3.961 11 N -1.099 6.099 12 S 2.710 3.290 13 O -0.989 6.989 14 O -0.992 6.992 15 C -0.635 4.635 16 C -0.143 4.143 17 C -0.121 4.121 18 C -0.139 4.139 19 C 0.068 3.932 20 C -0.496 4.496 21 H 0.079 0.921 22 C 0.040 3.960 23 N -0.820 5.820 24 Si 0.979 3.021 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.263 1.263 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.426 0.574 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.291 0.709 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -10.621 7.217 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.140 4.140 5 C -0.143 4.143 6 H 0.071 0.929 7 C -0.183 4.183 8 C -0.039 4.039 9 O -0.328 6.328 10 C -0.037 4.037 11 N -0.863 5.863 12 S 2.803 3.197 13 O -0.979 6.979 14 O -0.982 6.982 15 C -0.724 4.724 16 C -0.164 4.164 17 C -0.141 4.141 18 C -0.159 4.159 19 C 0.064 3.936 20 C -0.525 4.525 21 H 0.098 0.902 22 C -0.176 4.176 23 N -0.445 5.445 24 Si 0.799 3.201 25 H -0.182 1.182 26 H -0.191 1.191 27 H -0.187 1.187 28 C -0.158 4.158 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.264 0.736 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.156 -10.502 6.482 14.266 hybrid contribution 1.031 1.104 0.442 1.573 sum -6.125 -9.398 6.924 13.183 Atomic orbital electron populations 1.22286 0.93397 1.03823 1.03062 1.21015 0.95348 0.95841 0.84268 0.91370 1.21937 0.92254 1.02760 0.97072 1.22510 0.97102 0.99564 0.95110 0.92930 1.22990 1.00433 0.97841 0.97007 1.23614 0.99354 0.97684 0.83247 1.89122 1.34146 1.82239 1.27327 1.23914 0.86758 0.96340 0.96700 1.55452 1.81761 1.19413 1.29699 1.01041 0.73240 0.72713 0.72727 1.93505 1.52809 1.67272 1.84322 1.93500 1.82667 1.62633 1.59438 1.30189 1.15177 1.10095 1.16892 1.20291 0.91012 0.99834 1.05247 1.21058 0.98299 0.94857 0.99852 1.21588 0.97615 0.96057 1.00600 1.17976 0.91759 0.93346 0.90486 1.19807 1.03987 1.00016 1.28666 0.90240 1.26691 0.93375 1.04844 0.92658 1.69823 1.12292 1.39417 1.22989 0.85294 0.79259 0.76315 0.79196 1.18175 1.19122 1.18735 1.20812 0.98127 0.92844 1.04044 0.89757 0.93200 0.89993 0.88076 0.88120 0.92008 0.87348 0.88978 0.90179 0.90065 0.90749 0.73554 0.85889 0.86455 0.87220 0.89862 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 9.52 71.98 0.69 -2.60 16 2 C 0.14 3.35 2.77 44.99 0.12 3.47 16 3 H 0.07 2.00 7.20 -2.39 -0.02 1.99 16 4 C -0.10 -1.84 4.16 30.59 0.13 -1.72 16 5 C -0.12 -3.16 3.11 -9.78 -0.03 -3.19 16 6 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.15 -3.03 6.74 31.61 0.21 -2.81 16 8 C 0.04 0.81 7.63 72.48 0.55 1.37 16 9 O -0.41 -12.86 11.65 -148.98 -1.74 -14.60 16 10 C 0.04 1.11 5.54 72.49 0.40 1.51 16 11 N -1.10 -28.32 3.63 -169.38 -0.61 -28.94 16 12 S 2.71 97.82 5.63 -56.49 -0.32 97.50 16 13 O -0.99 -40.20 16.53 -128.00 -2.12 -42.32 16 14 O -0.99 -38.95 17.27 -128.00 -2.21 -41.16 16 15 C -0.63 -27.12 5.27 22.22 0.12 -27.00 16 16 C -0.14 -6.18 7.57 22.46 0.17 -6.01 16 17 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 18 C -0.14 -7.10 8.70 22.73 0.20 -6.90 16 19 C 0.07 3.53 5.57 -21.29 -0.12 3.41 16 20 C -0.50 -25.75 9.05 23.46 0.21 -25.54 16 21 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 22 C 0.04 1.94 5.14 85.26 0.44 2.38 16 23 N -0.82 -40.93 10.97 21.83 0.24 -40.69 16 24 Si 0.98 36.84 29.59 68.60 2.03 38.87 16 25 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 26 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 27 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 28 C -0.14 -6.52 8.61 22.73 0.20 -6.33 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.23 7.64 -2.39 -0.02 1.21 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.26 7.96 -2.39 -0.02 1.25 16 34 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.11 1.52 7.73 -2.39 -0.02 1.50 16 36 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.77 6.32 -2.39 -0.02 1.76 16 39 H 0.07 2.50 4.98 -2.39 -0.01 2.49 16 40 H 0.43 8.43 7.22 -96.75 -0.70 7.73 16 41 H 0.12 4.83 7.57 -2.91 -0.02 4.81 16 42 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.11 5.80 6.18 -2.91 -0.02 5.79 16 44 H 0.29 13.16 8.30 -92.71 -0.77 12.39 16 45 H 0.11 5.12 7.61 -2.91 -0.02 5.10 16 Total: -1.00 -67.26 367.67 -0.91 -68.17 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.31 Total: 38.46 kcal Atomic # 6 Polarization: -78.81 SS G_CDS: 3.51 Total: -75.30 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -0.37 Total: -69.63 kcal Atomic # 8 Polarization: -92.01 SS G_CDS: -6.06 Total: -98.08 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 97.82 SS G_CDS: -0.32 Total: 97.50 kcal Total: -67.26 -0.91 -68.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.039 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds