Wall clock time and date at job start Tue Mar 31 2020 23:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.53004 * 109.47371 * 120.00316 * 2 1 3 5 5 C 1.52993 * 109.47059 * 184.99962 * 4 2 1 6 6 H 1.08996 * 111.02305 * 302.23165 * 5 4 2 7 7 C 1.55568 * 111.22327 * 177.92441 * 5 4 2 8 8 C 1.54381 * 102.27701 * 207.98439 * 7 5 4 9 9 O 1.43232 * 107.58914 * 21.35579 * 8 7 5 10 10 C 1.43644 * 109.96975 * 1.71321 * 9 8 7 11 11 N 1.46503 * 109.47153 * 240.00202 * 2 1 3 12 12 S 1.65601 * 119.99751 * 95.00115 * 11 2 1 13 13 O 1.42106 * 106.40121 * 178.54197 * 12 11 2 14 14 O 1.42100 * 106.40117 * 311.45688 * 12 11 2 15 15 C 1.76198 * 107.21934 * 64.99950 * 12 11 2 16 16 C 1.38659 * 119.87620 * 269.72422 * 15 12 11 17 17 C 1.38613 * 120.49661 * 179.72152 * 16 15 12 18 18 C 1.37632 * 120.25101 * 0.55459 * 17 16 15 19 19 C 1.40700 * 119.74604 * 359.72639 * 18 17 16 20 20 C 1.41396 * 120.24776 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00156 * 155.30179 * 20 19 18 22 22 C 1.39946 * 119.99594 * 335.30206 * 20 19 18 23 23 N 1.30825 * 120.00463 * 342.22963 * 22 20 19 24 24 Si 1.86801 * 119.99916 * 162.22621 * 22 20 19 25 25 H 1.48502 * 109.47167 * 94.66370 * 24 22 20 26 26 H 1.48497 * 109.47586 * 214.66645 * 24 22 20 27 27 H 1.48503 * 109.47115 * 334.66971 * 24 22 20 28 28 C 1.37599 * 119.87159 * 89.99967 * 15 12 11 29 29 H 1.09000 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46892 * 299.99868 * 1 2 3 31 31 H 1.08996 * 109.46764 * 59.99544 * 1 2 3 32 32 H 1.08997 * 109.47005 * 64.99701 * 4 2 1 33 33 H 1.08999 * 109.46562 * 304.99898 * 4 2 1 34 34 H 1.09002 * 110.83585 * 89.78571 * 7 5 4 35 35 H 1.08997 * 110.84212 * 326.18427 * 7 5 4 36 36 H 1.09003 * 109.82946 * 261.84388 * 8 7 5 37 37 H 1.09001 * 109.90665 * 140.91838 * 8 7 5 38 38 H 1.09004 * 110.31146 * 94.48656 * 10 9 8 39 39 H 1.09006 * 110.30939 * 216.55175 * 10 9 8 40 40 H 0.96997 * 120.00210 * 275.00372 * 11 2 1 41 41 H 1.07992 * 119.74934 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.86880 * 180.27756 * 17 16 15 43 43 H 1.08004 * 120.12800 * 179.70177 * 18 17 16 44 44 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.13303 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 4.0246 -1.0308 0.4178 7 6 4.1236 -1.2899 2.5982 8 6 5.4218 -0.4934 2.8506 9 8 5.2980 0.7621 2.1723 10 6 4.0119 0.8530 1.5391 11 7 2.0184 -0.6906 -1.1962 12 16 2.4122 0.1773 -2.5505 13 8 2.8776 -0.7633 -3.5086 14 8 1.3246 1.0594 -2.7921 15 6 3.7928 1.1911 -2.1371 16 6 3.5869 2.4674 -1.6358 17 6 4.6636 3.2738 -1.3009 18 6 5.9509 2.8187 -1.4738 19 6 6.1718 1.5274 -1.9872 20 6 7.4899 1.0493 -2.1697 21 1 7.6836 -0.0131 -2.1713 22 6 8.5435 1.9530 -2.3481 23 7 8.2931 3.1901 -2.6921 24 14 10.3075 1.3928 -2.0949 25 1 10.8912 0.9906 -3.3998 26 1 11.1029 2.5068 -1.5192 27 1 10.3306 0.2356 -1.1646 28 6 5.0711 0.7153 -2.3183 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1369 34 1 4.3430 -2.3423 2.4181 35 1 3.4295 -1.1742 3.4306 36 1 6.2759 -1.0440 2.4564 37 1 5.5520 -0.3249 3.9196 38 1 3.3053 1.3681 2.1899 39 1 4.0957 1.3739 0.5853 40 1 2.1110 -1.6561 -1.1950 41 1 2.5802 2.8345 -1.5014 42 1 4.4915 4.2646 -0.9071 43 1 6.7883 3.4504 -1.2168 44 1 9.0234 3.8166 -2.8154 45 1 5.2292 -0.2773 -2.7135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:18 Heat of formation + Delta-G solvation = -119.146026 kcal Electronic energy + Delta-G solvation = -29096.406933 eV Core-core repulsion = 25204.790708 eV Total energy + Delta-G solvation = -3891.616225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.41945 -37.63715 -37.02406 -36.47131 -35.28423 -33.82463 -32.68964 -30.22818 -30.05037 -29.78123 -29.14998 -25.99433 -25.46951 -22.63866 -21.88250 -21.34276 -20.93040 -20.33489 -19.21619 -17.98887 -17.09988 -16.47125 -16.02303 -15.91349 -15.66049 -15.15658 -14.81455 -14.62931 -14.41222 -13.84390 -13.59126 -13.45839 -13.34961 -13.21963 -12.88212 -12.58889 -12.49211 -12.04004 -11.91579 -11.65498 -11.52254 -11.45547 -11.42346 -11.34574 -11.31045 -11.19002 -11.00438 -10.88339 -10.80512 -10.62893 -10.56353 -10.37148 -9.80213 -9.67164 -9.32200 -9.23546 -9.16344 -8.00954 -7.66669 -6.89675 -4.49765 1.02624 2.21366 2.65740 3.02487 3.04362 3.10826 3.55396 3.85969 4.08203 4.24271 4.42536 4.47315 4.67573 4.89443 4.97771 5.04349 5.13340 5.15443 5.37193 5.39655 5.44394 5.53421 5.54099 5.68696 5.75941 5.78185 5.86246 5.90050 5.98300 6.06631 6.17147 6.26219 6.27953 6.31057 6.38022 6.67802 6.79289 6.86039 7.05558 7.19894 7.25199 7.29001 7.39789 7.75091 7.83548 7.97469 8.42949 8.70438 8.74873 10.05986 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.005155 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.381937 B = 5430.628754 C = 6900.975275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.150 3.850 3 H 0.090 0.910 4 C -0.110 4.110 5 C -0.125 4.125 6 H 0.095 0.905 7 C -0.151 4.151 8 C 0.050 3.950 9 O -0.374 6.374 10 C 0.048 3.952 11 N -1.116 6.116 12 S 2.684 3.316 13 O -0.974 6.974 14 O -0.974 6.974 15 C -0.631 4.631 16 C -0.154 4.154 17 C -0.119 4.119 18 C -0.111 4.111 19 C 0.097 3.903 20 C -0.457 4.457 21 H 0.081 0.919 22 C 0.076 3.924 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.259 1.259 28 C -0.123 4.123 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.283 0.717 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -6.514 10.525 15.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.149 4.149 5 C -0.144 4.144 6 H 0.113 0.887 7 C -0.188 4.188 8 C -0.027 4.027 9 O -0.293 6.293 10 C -0.028 4.028 11 N -0.874 5.874 12 S 2.780 3.220 13 O -0.965 6.965 14 O -0.964 6.964 15 C -0.723 4.723 16 C -0.175 4.175 17 C -0.138 4.138 18 C -0.131 4.131 19 C 0.094 3.906 20 C -0.486 4.486 21 H 0.099 0.901 22 C -0.142 4.142 23 N -0.418 5.418 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.183 1.183 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.246 0.754 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.037 -6.000 9.641 14.513 hybrid contribution 1.377 -0.408 0.508 1.524 sum -7.659 -6.408 10.149 14.239 Atomic orbital electron populations 1.22326 0.95141 1.02431 1.03113 1.20768 0.94041 0.96580 0.84336 0.89241 1.21805 0.94225 1.01387 0.97488 1.22959 0.95945 0.96611 0.98848 0.88713 1.23209 0.97298 1.00408 0.97925 1.23065 0.97569 0.85439 0.96654 1.88490 1.35063 1.35781 1.69961 1.23652 0.84557 0.95946 0.98668 1.55727 1.82469 1.18972 1.30198 1.01821 0.74404 0.73442 0.72354 1.93539 1.82433 1.62663 1.57826 1.93512 1.52989 1.66288 1.83590 1.29679 1.14035 1.09734 1.18831 1.20042 0.97720 0.93349 1.06379 1.20781 0.93489 0.98057 1.01520 1.21606 0.95435 0.97479 0.98539 1.17634 0.92500 0.91640 0.88872 1.19584 0.91131 0.94665 1.43189 0.90077 1.25916 1.01972 0.94405 0.91934 1.69777 1.35125 1.04964 1.31920 0.86270 0.81079 0.79713 0.79571 1.19479 1.19939 1.18290 1.20696 0.90682 1.00261 1.02835 0.92313 0.91734 0.90911 0.90849 0.90473 0.90338 0.90835 0.91492 0.92135 0.92959 0.87847 0.75430 0.87729 0.88509 0.85893 0.90587 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.52 37.16 0.35 -1.40 16 2 C 0.15 1.74 2.69 -67.93 -0.18 1.56 16 3 H 0.09 1.15 6.36 -51.93 -0.33 0.82 16 4 C -0.11 -1.05 4.35 -26.73 -0.12 -1.17 16 5 C -0.12 -1.52 3.01 -88.23 -0.27 -1.78 16 6 H 0.09 1.30 7.78 -51.93 -0.40 0.90 16 7 C -0.15 -1.57 6.51 -24.64 -0.16 -1.73 16 8 C 0.05 0.65 7.80 37.88 0.30 0.94 16 9 O -0.37 -6.45 11.36 -35.23 -0.40 -6.85 16 10 C 0.05 0.72 6.40 38.18 0.24 0.96 16 11 N -1.12 -14.72 4.94 -4.89 -0.02 -14.75 16 12 S 2.68 48.78 5.65 -107.50 -0.61 48.17 16 13 O -0.97 -20.36 17.27 -57.17 -0.99 -21.35 16 14 O -0.97 -19.29 16.52 -57.17 -0.94 -20.23 16 15 C -0.63 -13.16 5.45 -39.66 -0.22 -13.38 16 16 C -0.15 -3.17 7.58 -39.29 -0.30 -3.46 16 17 C -0.12 -2.59 9.64 -39.66 -0.38 -2.97 16 18 C -0.11 -2.72 8.70 -38.87 -0.34 -3.06 16 19 C 0.10 2.46 5.57 -106.82 -0.60 1.87 16 20 C -0.46 -11.68 9.05 -37.74 -0.34 -12.03 16 21 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 22 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 23 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 24 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 28 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.89 7.64 -51.93 -0.40 0.49 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 39 H 0.10 1.81 5.71 -51.93 -0.30 1.52 16 40 H 0.41 4.45 8.84 -34.47 -0.30 4.15 16 41 H 0.10 1.95 7.59 -52.49 -0.40 1.55 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.12 3.13 6.18 -52.48 -0.32 2.80 16 44 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 45 H 0.11 2.47 7.60 -52.49 -0.40 2.07 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -30.90 373.23 -10.83 -41.72 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.62 Total: 10.78 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: -2.45 Total: -37.13 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.59 Total: -34.01 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.33 Total: -48.43 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 48.78 SS G_CDS: -0.61 Total: 48.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.90 -10.83 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.423 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds