Wall clock time and date at job start Tue Mar 31 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.53004 * 109.47371 * 120.00316 * 2 1 3 5 5 C 1.52993 * 109.47059 * 184.99962 * 4 2 1 6 6 H 1.08996 * 111.02305 * 302.23165 * 5 4 2 7 7 C 1.55568 * 111.22327 * 177.92441 * 5 4 2 8 8 C 1.54381 * 102.27701 * 207.98439 * 7 5 4 9 9 O 1.43232 * 107.58914 * 21.35579 * 8 7 5 10 10 C 1.43644 * 109.96975 * 1.71321 * 9 8 7 11 11 N 1.46503 * 109.47153 * 240.00202 * 2 1 3 12 12 S 1.65601 * 119.99751 * 95.00115 * 11 2 1 13 13 O 1.42106 * 106.40121 * 178.54197 * 12 11 2 14 14 O 1.42100 * 106.40117 * 311.45688 * 12 11 2 15 15 C 1.76198 * 107.21934 * 64.99950 * 12 11 2 16 16 C 1.38659 * 119.87620 * 269.72422 * 15 12 11 17 17 C 1.38613 * 120.49661 * 179.72152 * 16 15 12 18 18 C 1.37632 * 120.25101 * 0.55459 * 17 16 15 19 19 C 1.40700 * 119.74604 * 359.72639 * 18 17 16 20 20 C 1.41396 * 120.24776 * 179.97438 * 19 18 17 21 21 H 1.07996 * 120.00156 * 155.30179 * 20 19 18 22 22 C 1.39946 * 119.99594 * 335.30206 * 20 19 18 23 23 N 1.30825 * 120.00463 * 342.22963 * 22 20 19 24 24 Si 1.86801 * 119.99916 * 162.22621 * 22 20 19 25 25 H 1.48502 * 109.47167 * 94.66370 * 24 22 20 26 26 H 1.48497 * 109.47586 * 214.66645 * 24 22 20 27 27 H 1.48503 * 109.47115 * 334.66971 * 24 22 20 28 28 C 1.37599 * 119.87159 * 89.99967 * 15 12 11 29 29 H 1.09000 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46892 * 299.99868 * 1 2 3 31 31 H 1.08996 * 109.46764 * 59.99544 * 1 2 3 32 32 H 1.08997 * 109.47005 * 64.99701 * 4 2 1 33 33 H 1.08999 * 109.46562 * 304.99898 * 4 2 1 34 34 H 1.09002 * 110.83585 * 89.78571 * 7 5 4 35 35 H 1.08997 * 110.84212 * 326.18427 * 7 5 4 36 36 H 1.09003 * 109.82946 * 261.84388 * 8 7 5 37 37 H 1.09001 * 109.90665 * 140.91838 * 8 7 5 38 38 H 1.09004 * 110.31146 * 94.48656 * 10 9 8 39 39 H 1.09006 * 110.30939 * 216.55175 * 10 9 8 40 40 H 0.96997 * 120.00210 * 275.00372 * 11 2 1 41 41 H 1.07992 * 119.74934 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.86880 * 180.27756 * 17 16 15 43 43 H 1.08004 * 120.12800 * 179.70177 * 18 17 16 44 44 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.13303 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 4.0246 -1.0308 0.4178 7 6 4.1236 -1.2899 2.5982 8 6 5.4218 -0.4934 2.8506 9 8 5.2980 0.7621 2.1723 10 6 4.0119 0.8530 1.5391 11 7 2.0184 -0.6906 -1.1962 12 16 2.4122 0.1773 -2.5505 13 8 2.8776 -0.7633 -3.5086 14 8 1.3246 1.0594 -2.7921 15 6 3.7928 1.1911 -2.1371 16 6 3.5869 2.4674 -1.6358 17 6 4.6636 3.2738 -1.3009 18 6 5.9509 2.8187 -1.4738 19 6 6.1718 1.5274 -1.9872 20 6 7.4899 1.0493 -2.1697 21 1 7.6836 -0.0131 -2.1713 22 6 8.5435 1.9530 -2.3481 23 7 8.2931 3.1901 -2.6921 24 14 10.3075 1.3928 -2.0949 25 1 10.8912 0.9906 -3.3998 26 1 11.1029 2.5068 -1.5192 27 1 10.3306 0.2356 -1.1646 28 6 5.0711 0.7153 -2.3183 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -1.7715 1.2055 33 1 1.6055 -0.2618 2.1369 34 1 4.3430 -2.3423 2.4181 35 1 3.4295 -1.1742 3.4306 36 1 6.2759 -1.0440 2.4564 37 1 5.5520 -0.3249 3.9196 38 1 3.3053 1.3681 2.1899 39 1 4.0957 1.3739 0.5853 40 1 2.1110 -1.6561 -1.1950 41 1 2.5802 2.8345 -1.5014 42 1 4.4915 4.2646 -0.9071 43 1 6.7883 3.4504 -1.2168 44 1 9.0234 3.8166 -2.8154 45 1 5.2292 -0.2773 -2.7135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:17 Heat of formation + Delta-G solvation = -140.258445 kcal Electronic energy + Delta-G solvation = -29097.322436 eV Core-core repulsion = 25204.790708 eV Total energy + Delta-G solvation = -3892.531728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.46785 -39.41981 -38.35395 -37.75270 -36.87447 -35.65448 -33.73969 -31.90200 -31.56497 -31.21215 -30.11163 -27.33798 -26.89821 -23.69369 -23.58922 -22.79526 -22.22092 -21.29228 -20.67704 -19.63514 -18.55216 -17.70065 -17.56023 -17.20690 -16.82700 -16.74070 -16.51140 -16.02989 -15.62024 -15.19384 -15.08175 -14.87326 -14.51456 -14.31351 -14.19773 -13.86306 -13.62544 -13.58925 -13.24374 -13.15604 -13.05134 -13.03022 -12.84575 -12.81749 -12.58176 -12.46385 -12.36689 -12.22626 -12.14457 -11.82777 -11.55033 -11.53084 -11.37290 -11.24686 -11.11991 -10.42060 -10.34811 -9.80265 -9.50747 -8.72230 -6.42511 -0.45826 0.44802 0.87356 1.34774 1.42861 1.50120 2.14944 2.19387 2.57174 2.81976 3.06502 3.49824 3.53565 3.56337 3.79491 4.00934 4.09963 4.21798 4.28535 4.31897 4.37321 4.45956 4.49188 4.56734 4.74031 4.86847 4.87575 4.89911 4.92695 4.94831 5.01269 5.01673 5.08810 5.10283 5.19800 5.21895 5.40272 5.44102 5.46889 5.49294 5.59107 5.92057 5.96166 6.13021 6.20912 6.22244 6.55089 6.82439 6.87837 8.25989 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010929 B = 0.005155 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.381937 B = 5430.628754 C = 6900.975275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.100 4.100 5 C -0.124 4.124 6 H 0.071 0.929 7 C -0.137 4.137 8 C 0.037 3.963 9 O -0.416 6.416 10 C 0.041 3.959 11 N -1.098 6.098 12 S 2.712 3.288 13 O -1.002 7.002 14 O -0.985 6.985 15 C -0.634 4.634 16 C -0.142 4.142 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.070 3.930 20 C -0.496 4.496 21 H 0.076 0.924 22 C 0.037 3.963 23 N -0.825 5.825 24 Si 0.979 3.021 25 H -0.262 1.262 26 H -0.264 1.264 27 H -0.259 1.259 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.427 0.573 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.290 0.710 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 -7.795 12.467 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.138 4.138 5 C -0.143 4.143 6 H 0.089 0.911 7 C -0.174 4.174 8 C -0.039 4.039 9 O -0.336 6.336 10 C -0.035 4.035 11 N -0.861 5.861 12 S 2.805 3.195 13 O -0.992 6.992 14 O -0.975 6.975 15 C -0.723 4.723 16 C -0.163 4.163 17 C -0.140 4.140 18 C -0.153 4.153 19 C 0.067 3.933 20 C -0.526 4.526 21 H 0.094 0.906 22 C -0.178 4.178 23 N -0.451 5.451 24 Si 0.799 3.201 25 H -0.187 1.187 26 H -0.189 1.189 27 H -0.183 1.183 28 C -0.160 4.160 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.264 0.736 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.044 -7.269 11.584 17.578 hybrid contribution 1.840 0.005 -0.038 1.841 sum -9.204 -7.264 11.545 16.455 Atomic orbital electron populations 1.22310 0.93435 1.03753 1.03246 1.21075 0.95335 0.96092 0.84203 0.90664 1.21807 0.91841 1.03044 0.97148 1.22922 0.97913 0.94575 0.98867 0.91075 1.23186 0.96015 1.00524 0.97712 1.23298 0.98918 0.84493 0.97188 1.88437 1.36575 1.37926 1.70692 1.23715 0.84366 0.97949 0.97509 1.55315 1.81631 1.19481 1.29628 1.00972 0.73117 0.72736 0.72723 1.93498 1.82757 1.63044 1.59935 1.93497 1.52523 1.67137 1.84315 1.30170 1.14477 1.10498 1.17121 1.20370 0.98525 0.92903 1.04476 1.21059 0.92786 0.99267 1.00840 1.21547 0.96163 0.97413 1.00137 1.17941 0.93288 0.92514 0.89574 1.19818 0.92342 0.94861 1.45558 0.90556 1.26713 1.05771 0.94294 0.91026 1.69823 1.36611 1.05989 1.32697 0.85238 0.75879 0.79335 0.79603 1.18704 1.18868 1.18283 1.20716 0.91463 1.00108 1.03678 0.90434 0.89322 0.93103 0.88160 0.87771 0.88708 0.88080 0.92715 0.90352 0.90934 0.91178 0.73628 0.85141 0.86093 0.87623 0.89902 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.52 71.98 0.69 -2.12 16 2 C 0.14 2.82 2.69 44.99 0.12 2.94 16 3 H 0.08 1.76 6.36 -2.39 -0.02 1.75 16 4 C -0.10 -1.49 4.35 30.59 0.13 -1.36 16 5 C -0.12 -2.76 3.01 -9.25 -0.03 -2.79 16 6 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 7 C -0.14 -2.45 6.51 31.95 0.21 -2.24 16 8 C 0.04 0.94 7.80 72.45 0.56 1.51 16 9 O -0.42 -14.62 11.36 -148.98 -1.69 -16.31 16 10 C 0.04 1.20 6.40 72.65 0.47 1.66 16 11 N -1.10 -26.80 4.94 -169.38 -0.84 -27.63 16 12 S 2.71 96.71 5.65 -56.49 -0.32 96.39 16 13 O -1.00 -41.78 17.27 -128.00 -2.21 -43.99 16 14 O -0.98 -37.67 16.52 -128.00 -2.11 -39.79 16 15 C -0.63 -26.80 5.45 22.22 0.12 -26.68 16 16 C -0.14 -5.84 7.58 22.46 0.17 -5.67 16 17 C -0.12 -5.34 9.64 22.22 0.21 -5.13 16 18 C -0.13 -6.84 8.70 22.73 0.20 -6.65 16 19 C 0.07 3.75 5.57 -21.29 -0.12 3.63 16 20 C -0.50 -26.91 9.05 23.46 0.21 -26.70 16 21 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 22 C 0.04 1.88 5.14 85.26 0.44 2.31 16 23 N -0.83 -43.16 10.97 21.83 0.24 -42.92 16 24 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.14 -6.76 9.26 22.73 0.21 -6.55 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.09 7.64 -2.39 -0.02 1.07 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.29 8.04 -2.39 -0.02 1.27 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.77 8.00 -2.38 -0.02 1.75 16 39 H 0.07 2.51 5.71 -2.38 -0.01 2.50 16 40 H 0.43 8.17 8.84 -96.75 -0.85 7.31 16 41 H 0.13 4.66 7.59 -2.91 -0.02 4.63 16 42 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 43 H 0.11 5.72 6.18 -2.91 -0.02 5.71 16 44 H 0.29 13.69 8.30 -92.71 -0.77 12.93 16 45 H 0.10 5.03 7.60 -2.91 -0.02 5.01 16 Total: -1.00 -71.01 373.23 -1.16 -72.17 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.15 Total: 35.23 kcal Atomic # 6 Polarization: -77.42 SS G_CDS: 3.60 Total: -73.82 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.60 Total: -70.55 kcal Atomic # 8 Polarization: -94.08 SS G_CDS: -6.02 Total: -100.09 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Atomic # 16 Polarization: 96.71 SS G_CDS: -0.32 Total: 96.39 kcal Total: -71.01 -1.16 -72.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.092 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds