Wall clock time and date at job start Tue Mar 31 2020 23:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.52998 * 109.47251 * 240.00320 * 2 1 3 5 5 C 1.53000 * 109.47332 * 175.00175 * 4 2 1 6 6 H 1.09000 * 110.75037 * 57.01805 * 5 4 2 7 7 C 1.55301 * 110.84743 * 180.71013 * 5 4 2 8 8 C 1.54942 * 100.94110 * 152.32325 * 7 5 4 9 9 O 1.43642 * 105.13793 * 323.55636 * 8 7 5 10 10 C 1.43239 * 109.97069 * 24.42424 * 9 8 7 11 11 N 1.46498 * 109.47272 * 120.00110 * 2 1 3 12 12 S 1.65602 * 119.99865 * 265.00091 * 11 2 1 13 13 O 1.42101 * 106.40394 * 311.45644 * 12 11 2 14 14 O 1.42100 * 106.39933 * 178.53798 * 12 11 2 15 15 C 1.76203 * 107.22016 * 64.99987 * 12 11 2 16 16 C 1.38657 * 119.87709 * 89.99794 * 15 12 11 17 17 C 1.38609 * 120.49767 * 180.02562 * 16 15 12 18 18 C 1.37633 * 120.25106 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.74690 * 0.02562 * 18 17 16 20 20 C 1.41392 * 120.24567 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00242 * 335.24549 * 20 19 18 22 22 C 1.39946 * 120.00060 * 154.97303 * 20 19 18 23 23 N 1.30825 * 119.99793 * 343.05972 * 22 20 19 24 24 Si 1.86798 * 120.00235 * 163.06149 * 22 20 19 25 25 H 1.48501 * 109.47141 * 89.99966 * 24 22 20 26 26 H 1.48501 * 109.47437 * 209.99718 * 24 22 20 27 27 H 1.48495 * 109.47249 * 330.00093 * 24 22 20 28 28 C 1.37602 * 119.87250 * 270.28457 * 15 12 11 29 29 H 1.08998 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46900 * 300.00256 * 1 2 3 31 31 H 1.09006 * 109.46933 * 59.99645 * 1 2 3 32 32 H 1.09008 * 109.46427 * 295.00010 * 4 2 1 33 33 H 1.08998 * 109.47306 * 54.99454 * 4 2 1 34 34 H 1.09000 * 111.13219 * 270.24409 * 7 5 4 35 35 H 1.09004 * 111.12550 * 34.40714 * 7 5 4 36 36 H 1.09004 * 110.31081 * 204.64393 * 8 7 5 37 37 H 1.09000 * 110.31173 * 82.47283 * 8 7 5 38 38 H 1.09001 * 109.83544 * 238.77681 * 10 9 8 39 39 H 1.09000 * 109.82996 * 117.79941 * 10 9 8 40 40 H 0.97000 * 120.00373 * 84.99732 * 11 2 1 41 41 H 1.07995 * 119.75115 * 0.02562 * 16 15 12 42 42 H 1.08001 * 119.87355 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.12799 * 180.02562 * 18 17 16 44 44 H 0.96997 * 119.99975 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.12863 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 1 4.0193 -1.0200 -0.4103 7 6 4.1159 -1.3207 -2.5816 8 6 5.4169 -0.5154 -2.8258 9 8 5.0936 0.8374 -2.4670 10 6 4.0030 0.8499 -1.5384 11 7 2.0184 -0.6906 1.1961 12 16 2.4122 0.1772 2.5505 13 8 3.2437 1.2443 2.1156 14 8 2.8124 -0.7698 3.5314 15 6 0.9275 0.9147 3.1475 16 6 0.1381 0.2350 4.0625 17 6 -1.0327 0.8029 4.5402 18 6 -1.4239 2.0504 4.1103 19 6 -0.6308 2.7494 3.1820 20 6 -1.0230 4.0314 2.7327 21 1 -2.0641 4.3175 2.7584 22 6 -0.0614 4.9318 2.2602 23 7 1.2039 4.7393 2.5312 24 14 -0.5846 6.4083 1.2427 25 1 -0.8584 7.5576 2.1424 26 1 0.5024 6.7681 0.2970 27 1 -1.8137 6.0733 0.4797 28 6 0.5528 2.1606 2.6993 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1370 34 1 4.3348 -2.3698 -2.3824 35 1 3.4269 -1.2175 -3.4199 36 1 5.7042 -0.5699 -3.8759 37 1 6.2200 -0.8930 -2.1930 38 1 3.1736 1.4253 -1.9496 39 1 4.3264 1.2881 -0.5941 40 1 2.1110 -1.6562 1.1949 41 1 0.4376 -0.7442 4.4057 42 1 -1.6401 0.2643 5.2525 43 1 -2.3363 2.4911 4.4842 44 1 1.8703 5.3635 2.2041 45 1 1.1670 2.6865 1.9833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:26 Heat of formation + Delta-G solvation = -119.953348 kcal Electronic energy + Delta-G solvation = -28578.378529 eV Core-core repulsion = 24686.727295 eV Total energy + Delta-G solvation = -3891.651233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.61821 -37.68644 -36.95998 -36.41321 -35.18732 -33.83139 -32.82657 -30.30670 -30.22083 -29.64835 -29.14527 -25.99208 -25.47923 -22.80059 -21.79313 -21.41856 -21.16078 -20.33499 -19.09666 -17.85471 -17.15741 -16.63780 -16.14080 -15.98348 -15.77367 -14.99797 -14.81947 -14.69477 -14.45107 -14.09411 -13.55106 -13.36686 -13.29490 -13.14187 -12.86040 -12.69550 -12.52245 -12.20057 -11.83550 -11.64038 -11.50534 -11.48865 -11.33319 -11.25979 -11.23086 -11.19815 -11.07336 -10.88089 -10.83367 -10.76662 -10.63804 -10.43976 -9.91302 -9.63163 -9.48330 -9.35372 -9.09820 -8.10692 -7.64122 -6.91422 -4.53335 1.11350 2.17872 2.68759 3.01246 3.03238 3.08092 3.62794 3.82880 3.86315 4.27825 4.31705 4.44840 4.56408 4.81982 4.95450 5.04253 5.09969 5.16794 5.23515 5.36162 5.44748 5.53164 5.55126 5.61823 5.69166 5.76140 5.84038 5.84890 6.01945 6.04338 6.08044 6.19203 6.26310 6.40763 6.49521 6.54987 6.82848 6.85412 7.00117 7.06605 7.19814 7.28444 7.44315 7.64158 7.75483 7.99353 8.32230 8.66282 8.70214 10.04305 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.004655 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.305730 B = 6013.731750 C = 7524.181681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.147 3.853 3 H 0.094 0.906 4 C -0.109 4.109 5 C -0.124 4.124 6 H 0.088 0.912 7 C -0.153 4.153 8 C 0.050 3.950 9 O -0.387 6.387 10 C 0.047 3.953 11 N -1.117 6.117 12 S 2.683 3.317 13 O -0.961 6.961 14 O -0.981 6.981 15 C -0.638 4.638 16 C -0.159 4.159 17 C -0.105 4.105 18 C -0.189 4.189 19 C 0.092 3.908 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.073 3.927 23 N -0.783 5.783 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.260 1.260 28 C -0.057 4.057 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.410 0.590 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.288 0.712 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -9.931 -10.216 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.039 3.961 3 H 0.112 0.888 4 C -0.148 4.148 5 C -0.142 4.142 6 H 0.106 0.894 7 C -0.190 4.190 8 C -0.027 4.027 9 O -0.306 6.306 10 C -0.029 4.029 11 N -0.874 5.874 12 S 2.779 3.221 13 O -0.951 6.951 14 O -0.971 6.971 15 C -0.730 4.730 16 C -0.180 4.180 17 C -0.125 4.125 18 C -0.209 4.209 19 C 0.088 3.912 20 C -0.489 4.489 21 H 0.100 0.900 22 C -0.147 4.147 23 N -0.407 5.407 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.183 1.183 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.243 0.757 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.969 -9.358 -9.985 14.003 hybrid contribution -1.074 0.247 -0.101 1.106 sum 1.895 -9.110 -10.085 13.722 Atomic orbital electron populations 1.22390 0.94813 1.02517 1.03867 1.20823 0.94367 0.96809 0.84052 0.88766 1.21843 0.93656 1.01532 0.97795 1.22767 0.96837 0.95894 0.98725 0.89360 1.23331 0.97440 1.00110 0.98140 1.23336 0.96580 0.82477 1.00302 1.88401 1.52624 1.25848 1.63728 1.23378 0.89494 0.96236 0.93792 1.55726 1.84299 1.19193 1.28204 1.01855 0.74976 0.73137 0.72172 1.93563 1.64926 1.55243 1.81399 1.93509 1.82253 1.62832 1.58509 1.29890 1.21768 1.07668 1.13649 1.19970 0.96570 0.99401 1.02098 1.20617 0.96354 0.95887 0.99609 1.21210 1.02109 0.96531 1.01012 1.17670 0.91209 0.92785 0.89489 1.19582 0.95201 0.97290 1.36870 0.90042 1.25974 0.94430 0.99757 0.94501 1.69747 1.01854 1.35364 1.33784 0.86304 0.79728 0.80670 0.80126 1.19346 1.19736 1.18339 1.21212 0.97581 0.90627 0.98408 0.92325 0.90343 0.91687 0.90779 0.90215 0.90079 0.90287 0.90096 0.92387 0.90977 0.89960 0.75664 0.87834 0.88587 0.88374 0.90027 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.52 37.16 0.35 -1.99 16 2 C 0.15 1.93 2.83 -67.93 -0.19 1.74 16 3 H 0.09 1.42 6.70 -51.93 -0.35 1.08 16 4 C -0.11 -1.09 4.20 -26.73 -0.11 -1.21 16 5 C -0.12 -1.36 2.92 -88.68 -0.26 -1.62 16 6 H 0.09 1.02 7.75 -51.93 -0.40 0.61 16 7 C -0.15 -1.35 6.62 -24.49 -0.16 -1.51 16 8 C 0.05 0.51 7.78 38.18 0.30 0.81 16 9 O -0.39 -5.49 11.36 -35.23 -0.40 -5.89 16 10 C 0.05 0.64 6.49 37.88 0.25 0.89 16 11 N -1.12 -15.77 4.92 -4.89 -0.02 -15.79 16 12 S 2.68 52.03 5.71 -107.50 -0.61 51.42 16 13 O -0.96 -21.21 16.61 -57.17 -0.95 -22.15 16 14 O -0.98 -20.74 17.27 -57.17 -0.99 -21.73 16 15 C -0.64 -14.04 5.07 -39.66 -0.20 -14.24 16 16 C -0.16 -3.42 9.53 -39.29 -0.37 -3.80 16 17 C -0.11 -2.24 10.02 -39.67 -0.40 -2.64 16 18 C -0.19 -4.33 9.80 -38.87 -0.38 -4.71 16 19 C 0.09 2.30 5.57 -106.83 -0.59 1.70 16 20 C -0.46 -11.44 9.05 -37.74 -0.34 -11.78 16 21 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 22 C 0.07 1.75 5.15 -17.34 -0.09 1.66 16 23 N -0.78 -19.81 10.96 55.55 0.61 -19.20 16 24 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 28 C -0.06 -1.38 7.19 -38.87 -0.28 -1.66 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.29 6.15 -51.93 -0.32 0.97 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.41 4.61 8.84 -34.47 -0.30 4.31 16 41 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 44 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 45 H 0.14 3.42 5.74 -52.49 -0.30 3.12 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -30.77 375.39 -10.89 -41.66 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.67 Total: 11.59 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: -2.49 Total: -38.35 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.58 Total: -34.99 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -2.34 Total: -49.77 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 52.03 SS G_CDS: -0.61 Total: 51.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.77 -10.89 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.294 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds