Wall clock time and date at job start Tue Mar 31 2020 23:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.52998 * 109.47251 * 240.00320 * 2 1 3 5 5 C 1.53000 * 109.47332 * 175.00175 * 4 2 1 6 6 H 1.09000 * 110.75037 * 57.01805 * 5 4 2 7 7 C 1.55301 * 110.84743 * 180.71013 * 5 4 2 8 8 C 1.54942 * 100.94110 * 152.32325 * 7 5 4 9 9 O 1.43642 * 105.13793 * 323.55636 * 8 7 5 10 10 C 1.43239 * 109.97069 * 24.42424 * 9 8 7 11 11 N 1.46498 * 109.47272 * 120.00110 * 2 1 3 12 12 S 1.65602 * 119.99865 * 265.00091 * 11 2 1 13 13 O 1.42101 * 106.40394 * 311.45644 * 12 11 2 14 14 O 1.42100 * 106.39933 * 178.53798 * 12 11 2 15 15 C 1.76203 * 107.22016 * 64.99987 * 12 11 2 16 16 C 1.38657 * 119.87709 * 89.99794 * 15 12 11 17 17 C 1.38609 * 120.49767 * 180.02562 * 16 15 12 18 18 C 1.37633 * 120.25106 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.74690 * 0.02562 * 18 17 16 20 20 C 1.41392 * 120.24567 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00242 * 335.24549 * 20 19 18 22 22 C 1.39946 * 120.00060 * 154.97303 * 20 19 18 23 23 N 1.30825 * 119.99793 * 343.05972 * 22 20 19 24 24 Si 1.86798 * 120.00235 * 163.06149 * 22 20 19 25 25 H 1.48501 * 109.47141 * 89.99966 * 24 22 20 26 26 H 1.48501 * 109.47437 * 209.99718 * 24 22 20 27 27 H 1.48495 * 109.47249 * 330.00093 * 24 22 20 28 28 C 1.37602 * 119.87250 * 270.28457 * 15 12 11 29 29 H 1.08998 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46900 * 300.00256 * 1 2 3 31 31 H 1.09006 * 109.46933 * 59.99645 * 1 2 3 32 32 H 1.09008 * 109.46427 * 295.00010 * 4 2 1 33 33 H 1.08998 * 109.47306 * 54.99454 * 4 2 1 34 34 H 1.09000 * 111.13219 * 270.24409 * 7 5 4 35 35 H 1.09004 * 111.12550 * 34.40714 * 7 5 4 36 36 H 1.09004 * 110.31081 * 204.64393 * 8 7 5 37 37 H 1.09000 * 110.31173 * 82.47283 * 8 7 5 38 38 H 1.09001 * 109.83544 * 238.77681 * 10 9 8 39 39 H 1.09000 * 109.82996 * 117.79941 * 10 9 8 40 40 H 0.97000 * 120.00373 * 84.99732 * 11 2 1 41 41 H 1.07995 * 119.75115 * 0.02562 * 16 15 12 42 42 H 1.08001 * 119.87355 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.12799 * 180.02562 * 18 17 16 44 44 H 0.96997 * 119.99975 * 180.02562 * 23 22 20 45 45 H 1.07995 * 120.12863 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 1 4.0193 -1.0200 -0.4103 7 6 4.1159 -1.3207 -2.5816 8 6 5.4169 -0.5154 -2.8258 9 8 5.0936 0.8374 -2.4670 10 6 4.0030 0.8499 -1.5384 11 7 2.0184 -0.6906 1.1961 12 16 2.4122 0.1772 2.5505 13 8 3.2437 1.2443 2.1156 14 8 2.8124 -0.7698 3.5314 15 6 0.9275 0.9147 3.1475 16 6 0.1381 0.2350 4.0625 17 6 -1.0327 0.8029 4.5402 18 6 -1.4239 2.0504 4.1103 19 6 -0.6308 2.7494 3.1820 20 6 -1.0230 4.0314 2.7327 21 1 -2.0641 4.3175 2.7584 22 6 -0.0614 4.9318 2.2602 23 7 1.2039 4.7393 2.5312 24 14 -0.5846 6.4083 1.2427 25 1 -0.8584 7.5576 2.1424 26 1 0.5024 6.7681 0.2970 27 1 -1.8137 6.0733 0.4797 28 6 0.5528 2.1606 2.6993 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -1.7715 -1.2055 33 1 1.6054 -0.2617 -2.1370 34 1 4.3348 -2.3698 -2.3824 35 1 3.4269 -1.2175 -3.4199 36 1 5.7042 -0.5699 -3.8759 37 1 6.2200 -0.8930 -2.1930 38 1 3.1736 1.4253 -1.9496 39 1 4.3264 1.2881 -0.5941 40 1 2.1110 -1.6562 1.1949 41 1 0.4376 -0.7442 4.4057 42 1 -1.6401 0.2643 5.2525 43 1 -2.3363 2.4911 4.4842 44 1 1.8703 5.3635 2.2041 45 1 1.1670 2.6865 1.9833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:25 Heat of formation + Delta-G solvation = -140.701526 kcal Electronic energy + Delta-G solvation = -28579.278237 eV Core-core repulsion = 24686.727295 eV Total energy + Delta-G solvation = -3892.550942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.55118 -39.43980 -38.34534 -37.80604 -36.87698 -35.62956 -33.81734 -32.06451 -31.43921 -31.22675 -30.14902 -27.31136 -26.95105 -23.72950 -23.52599 -22.96587 -22.33423 -21.28391 -20.59774 -19.54518 -18.64635 -17.90802 -17.60403 -17.11316 -16.90686 -16.66455 -16.52843 -16.02261 -15.62834 -15.22956 -15.13925 -14.97630 -14.46812 -14.38724 -14.08114 -13.88301 -13.76277 -13.51682 -13.24462 -13.15727 -13.06547 -12.94352 -12.86517 -12.81627 -12.63108 -12.56743 -12.41017 -12.24446 -12.14596 -11.82595 -11.64996 -11.61473 -11.41649 -11.24089 -11.11953 -10.49110 -10.43150 -9.85976 -9.45153 -8.70766 -6.41805 -0.45345 0.41192 0.93789 1.37886 1.45917 1.53235 2.16245 2.18116 2.57944 2.81336 2.97732 3.44366 3.50853 3.55052 3.71640 3.95055 4.02980 4.17369 4.29792 4.33367 4.34621 4.43431 4.52375 4.55263 4.66702 4.73493 4.82083 4.85023 4.91629 4.93685 4.99199 5.02494 5.05119 5.10492 5.12527 5.24725 5.34165 5.39610 5.43741 5.46168 5.64411 5.85737 5.95002 6.06998 6.20856 6.23155 6.47995 6.83461 6.87816 8.26928 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.004655 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.305730 B = 6013.731750 C = 7524.181681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.142 3.858 3 H 0.066 0.934 4 C -0.099 4.099 5 C -0.124 4.124 6 H 0.081 0.919 7 C -0.139 4.139 8 C 0.037 3.963 9 O -0.414 6.414 10 C 0.043 3.957 11 N -1.094 6.094 12 S 2.705 3.295 13 O -0.993 6.993 14 O -0.996 6.996 15 C -0.646 4.646 16 C -0.160 4.160 17 C -0.106 4.106 18 C -0.199 4.199 19 C 0.062 3.938 20 C -0.492 4.492 21 H 0.084 0.916 22 C 0.034 3.966 23 N -0.825 5.825 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.251 1.251 28 C -0.075 4.075 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.428 0.572 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.291 0.709 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 -12.206 -11.734 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.035 3.965 3 H 0.085 0.915 4 C -0.138 4.138 5 C -0.143 4.143 6 H 0.099 0.901 7 C -0.176 4.176 8 C -0.039 4.039 9 O -0.334 6.334 10 C -0.034 4.034 11 N -0.857 5.857 12 S 2.799 3.201 13 O -0.983 6.983 14 O -0.986 6.986 15 C -0.736 4.736 16 C -0.180 4.180 17 C -0.125 4.125 18 C -0.218 4.218 19 C 0.059 3.941 20 C -0.521 4.521 21 H 0.102 0.898 22 C -0.181 4.181 23 N -0.450 5.450 24 Si 0.798 3.202 25 H -0.187 1.187 26 H -0.194 1.194 27 H -0.174 1.174 28 C -0.096 4.096 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.984 -11.653 -11.477 16.476 hybrid contribution -0.741 0.816 0.410 1.176 sum 1.244 -10.837 -11.068 15.540 Atomic orbital electron populations 1.22359 0.94468 1.03711 1.02823 1.20974 0.94597 0.96038 0.84861 0.91534 1.21829 0.92678 1.03020 0.96237 1.22771 0.97625 0.94065 0.99814 0.90095 1.23312 0.96391 1.00789 0.97095 1.23637 0.97699 0.81086 1.01492 1.88369 1.52867 1.28525 1.63670 1.23338 0.89437 0.98322 0.92274 1.55222 1.83899 1.19908 1.26700 1.01067 0.73896 0.72551 0.72602 1.93532 1.65695 1.57033 1.82003 1.93476 1.82330 1.62799 1.60032 1.30271 1.22607 1.07176 1.13549 1.20378 0.96385 1.00116 1.01157 1.21012 0.96541 0.95356 0.99629 1.21479 1.02354 0.97300 1.00705 1.18050 0.92129 0.93512 0.90442 1.19844 0.95628 0.98001 1.38628 0.89756 1.26799 0.94052 1.02377 0.94881 1.69835 1.03052 1.36813 1.35307 0.85266 0.79486 0.76995 0.78490 1.18729 1.19400 1.17415 1.21021 0.97822 0.91609 0.99116 0.89881 0.93966 0.90247 0.87626 0.88427 0.87584 0.88780 0.88158 0.92233 0.90908 0.93559 0.73425 0.85666 0.84953 0.87180 0.89858 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.52 71.98 0.69 -3.71 16 2 C 0.14 3.62 2.83 44.99 0.13 3.75 16 3 H 0.07 2.10 6.70 -2.39 -0.02 2.09 16 4 C -0.10 -1.69 4.20 30.59 0.13 -1.56 16 5 C -0.12 -2.51 2.92 -9.54 -0.03 -2.54 16 6 H 0.08 1.75 7.75 -2.39 -0.02 1.73 16 7 C -0.14 -1.99 6.62 32.05 0.21 -1.78 16 8 C 0.04 0.69 7.78 72.65 0.56 1.26 16 9 O -0.41 -11.80 11.36 -148.98 -1.69 -13.49 16 10 C 0.04 1.19 6.49 72.45 0.47 1.66 16 11 N -1.09 -29.76 4.92 -169.39 -0.83 -30.59 16 12 S 2.71 106.08 5.71 -56.49 -0.32 105.75 16 13 O -0.99 -45.89 16.61 -128.00 -2.13 -48.02 16 14 O -1.00 -41.50 17.27 -128.00 -2.21 -43.71 16 15 C -0.65 -28.90 5.07 22.22 0.11 -28.78 16 16 C -0.16 -6.71 9.53 22.46 0.21 -6.49 16 17 C -0.11 -4.39 10.02 22.22 0.22 -4.17 16 18 C -0.20 -9.15 9.80 22.73 0.22 -8.93 16 19 C 0.06 3.19 5.57 -21.29 -0.12 3.08 16 20 C -0.49 -25.31 9.05 23.46 0.21 -25.10 16 21 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 22 C 0.03 1.70 5.15 85.26 0.44 2.14 16 23 N -0.82 -43.82 10.96 21.83 0.24 -43.58 16 24 Si 0.98 37.35 29.59 68.60 2.03 39.38 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 27 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 28 C -0.07 -3.77 7.19 22.73 0.16 -3.61 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 1.39 6.15 -2.38 -0.01 1.37 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.11 8.04 -2.39 -0.02 1.09 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.95 7.74 -2.39 -0.02 1.93 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.43 8.56 8.84 -96.75 -0.85 7.70 16 41 H 0.13 4.67 7.60 -2.91 -0.02 4.65 16 42 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 44 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 45 H 0.12 6.28 5.74 -2.91 -0.02 6.27 16 Total: -1.00 -70.12 375.39 -1.14 -71.26 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.15 Total: 37.79 kcal Atomic # 6 Polarization: -78.41 SS G_CDS: 3.63 Total: -74.79 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -0.59 Total: -74.17 kcal Atomic # 8 Polarization: -99.19 SS G_CDS: -6.03 Total: -105.22 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: 106.08 SS G_CDS: -0.32 Total: 105.75 kcal Total: -70.12 -1.14 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.443 kcal (2) G-P(sol) polarization free energy of solvation -70.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds