Wall clock time and date at job start Tue Mar 31 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.67402 * 2 1 4 4 N 1.47149 * 109.67959 * 120.55055 * 2 1 3 5 5 S 1.65597 * 120.98453 * 249.21060 * 4 2 1 6 6 O 1.42102 * 106.39889 * 203.54533 * 5 4 2 7 7 O 1.42099 * 106.40329 * 336.46209 * 5 4 2 8 8 C 1.76194 * 107.21813 * 90.00313 * 5 4 2 9 9 C 1.38658 * 119.87493 * 90.00336 * 8 5 4 10 10 C 1.38618 * 120.50145 * 179.97438 * 9 8 5 11 11 C 1.37635 * 120.24640 * 0.02562 * 10 9 8 12 12 C 1.40702 * 119.74645 * 359.97438 * 11 10 9 13 13 C 1.41398 * 120.24344 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99485 * 155.19069 * 13 12 11 15 15 C 1.39944 * 120.00102 * 335.18362 * 13 12 11 16 16 N 1.30825 * 119.99945 * 342.34441 * 15 13 12 17 17 Si 1.86803 * 119.99741 * 162.33785 * 15 13 12 18 18 H 1.48495 * 109.47055 * 60.00704 * 17 15 13 19 19 H 1.48502 * 109.46931 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47148 * 300.00184 * 17 15 13 21 21 C 1.37593 * 119.87898 * 269.72317 * 8 5 4 22 22 C 1.47154 * 118.03387 * 69.19497 * 4 2 1 23 23 C 1.53291 * 108.38830 * 50.53009 * 22 4 2 24 24 O 1.42963 * 109.22325 * 307.70116 * 23 22 4 25 25 C 1.42963 * 114.16871 * 62.57535 * 24 23 22 26 26 C 1.53005 * 109.50904 * 57.34564 * 25 24 23 27 27 C 1.52996 * 109.51392 * 177.49447 * 25 24 23 28 28 H 1.08998 * 109.47102 * 180.51972 * 1 2 3 29 29 H 1.08998 * 109.47470 * 300.51741 * 1 2 3 30 30 H 1.09000 * 109.47001 * 60.51939 * 1 2 3 31 31 H 1.08001 * 119.75494 * 359.94891 * 9 8 5 32 32 H 1.07997 * 119.87909 * 179.97438 * 10 9 8 33 33 H 1.07999 * 120.13073 * 179.97438 * 11 10 9 34 34 H 0.97006 * 119.99287 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.12099 * 0.02562 * 21 8 5 36 36 H 1.09002 * 109.68266 * 170.25454 * 22 4 2 37 37 H 1.09005 * 109.68024 * 290.80395 * 22 4 2 38 38 H 1.09002 * 109.51727 * 187.77695 * 23 22 4 39 39 H 1.09001 * 109.51257 * 67.62354 * 23 22 4 40 40 H 1.09007 * 109.46819 * 59.99997 * 26 25 24 41 41 H 1.09002 * 109.47197 * 179.97438 * 26 25 24 42 42 H 1.08999 * 109.46997 * 300.00020 * 26 25 24 43 43 H 1.09009 * 109.47101 * 60.00440 * 27 25 24 44 44 H 1.08999 * 109.47044 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.47783 * 300.00740 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 7 2.0255 -0.7043 1.1932 5 16 2.7871 0.1170 2.4130 6 8 3.5967 -0.8332 3.0919 7 8 3.3050 1.3065 1.8335 8 6 1.5454 0.6206 3.5571 9 6 1.1991 -0.2112 4.6110 10 6 0.2245 0.1723 5.5191 11 6 -0.4112 1.3855 5.3829 12 6 -0.0678 2.2377 4.3172 13 6 -0.7137 3.4866 4.1676 14 1 -0.2197 4.2905 3.6421 15 6 -1.9932 3.6810 4.7002 16 7 -2.7308 2.6499 5.0231 17 14 -2.6475 5.4127 4.9503 18 1 -2.6916 6.1185 3.6446 19 1 -4.0156 5.3468 5.5243 20 1 -1.7555 6.1493 5.8815 21 6 0.9272 1.8404 3.4048 22 6 1.8240 -2.1599 1.2706 23 6 2.3260 -2.7877 -0.0346 24 8 1.7168 -2.1205 -1.1426 25 6 2.0462 -0.7329 -1.2434 26 6 3.5651 -0.5738 -1.3365 27 6 1.3919 -0.1419 -2.4937 28 1 -0.3633 -1.0276 0.0093 29 1 -0.3634 0.5218 0.8853 30 1 -0.3633 0.5057 -0.8946 31 1 1.6921 -1.1653 4.7252 32 1 -0.0377 -0.4836 6.3360 33 1 -1.1705 1.6822 6.0911 34 1 -3.6176 2.7848 5.3927 35 1 1.2015 2.4885 2.5856 36 1 2.3863 -2.5641 2.1124 37 1 0.7636 -2.3774 1.3986 38 1 2.0610 -3.8448 -0.0558 39 1 3.4091 -2.6818 -0.0966 40 1 3.9321 -1.0991 -2.2184 41 1 3.8156 0.4842 -1.4138 42 1 4.0298 -0.9933 -0.4442 43 1 0.3097 -0.2539 -2.4249 44 1 1.6438 0.9159 -2.5701 45 1 1.7560 -0.6665 -3.3770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:50 Heat of formation + Delta-G solvation = -100.007712 kcal Electronic energy + Delta-G solvation = -29126.678987 eV Core-core repulsion = 25235.892661 eV Total energy + Delta-G solvation = -3890.786326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.11220 -37.66184 -36.81630 -35.37717 -34.99360 -33.98783 -33.86842 -30.11683 -30.00948 -29.76010 -28.23215 -27.25363 -25.50813 -23.45763 -23.02083 -21.85039 -21.00934 -19.44817 -18.59512 -18.04228 -17.25945 -16.65517 -16.00142 -15.60004 -15.40713 -15.10010 -14.97586 -14.72506 -14.52460 -13.83209 -13.52349 -13.46214 -13.36576 -12.90085 -12.61134 -12.44212 -12.35818 -12.04245 -11.94985 -11.94038 -11.79619 -11.68492 -11.61565 -11.43934 -11.38466 -11.34908 -11.15903 -11.04326 -10.92678 -10.90647 -10.65679 -10.21842 -10.00191 -9.79247 -9.57738 -9.36910 -8.61172 -8.04395 -7.72830 -6.95024 -4.56117 0.90844 2.16543 2.61803 2.97883 2.99887 3.06416 3.36171 3.68644 3.80762 4.21204 4.38469 4.54655 4.69822 4.81589 4.92681 5.00308 5.13211 5.27363 5.33874 5.39471 5.47628 5.50616 5.57776 5.60671 5.70180 5.82502 5.87055 5.89364 5.99411 6.00917 6.06413 6.14369 6.16886 6.39532 6.52860 6.61032 6.64914 6.74190 6.89761 7.02022 7.19276 7.19880 7.35571 7.70060 7.78040 7.91633 8.37511 8.64488 8.69248 10.00475 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003991 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.232481 B = 7013.802851 C = 7762.576080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 H 0.108 0.892 4 N -0.996 5.996 5 S 2.684 3.316 6 O -0.974 6.974 7 O -0.968 6.968 8 C -0.631 4.631 9 C -0.148 4.148 10 C -0.120 4.120 11 C -0.118 4.118 12 C 0.093 3.907 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.911 3.089 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.125 4.125 22 C 0.085 3.915 23 C 0.050 3.950 24 O -0.368 6.368 25 C 0.109 3.891 26 C -0.180 4.180 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.284 0.716 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -7.024 -10.035 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 H 0.126 0.874 4 N -0.833 5.833 5 S 2.783 3.217 6 O -0.964 6.964 7 O -0.959 6.959 8 C -0.723 4.723 9 C -0.169 4.169 10 C -0.140 4.140 11 C -0.138 4.138 12 C 0.090 3.910 13 C -0.490 4.490 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.146 4.146 22 C -0.041 4.041 23 C -0.029 4.029 24 O -0.287 6.287 25 C 0.068 3.932 26 C -0.238 4.238 27 C -0.197 4.197 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.690 -7.031 -10.036 13.121 hybrid contribution -1.047 0.853 0.835 1.588 sum 3.643 -6.178 -9.201 11.666 Atomic orbital electron populations 1.22170 0.94062 1.03056 1.03002 1.21630 0.95590 0.96748 0.84007 0.87423 1.57937 1.76690 1.15760 1.32897 1.01836 0.74367 0.72730 0.72784 1.93493 1.66116 1.62776 1.74024 1.93508 1.77733 1.47033 1.77580 1.29773 1.21713 1.05549 1.15231 1.20051 1.01001 0.98678 0.97209 1.20804 0.97231 0.97288 0.98637 1.21629 1.00095 0.94173 0.97867 1.17667 0.90472 0.93055 0.89835 1.19581 0.99853 0.97892 1.31676 0.89958 1.25925 0.96541 0.99062 0.92695 1.69775 1.09361 1.32009 1.30735 0.86305 0.78133 0.82097 0.79926 1.18795 1.20229 1.18676 1.20737 1.00036 0.93994 0.99844 1.22070 1.02765 0.79699 0.99545 1.22911 0.97643 0.96598 0.85722 1.87949 1.71684 1.21529 1.47531 1.21767 0.94222 0.82329 0.94847 1.22421 0.95659 1.03297 1.02377 1.21840 1.01784 1.00654 0.95454 0.91718 0.91140 0.91330 0.87771 0.88393 0.85784 0.90515 0.87191 0.88130 0.90478 0.87967 0.92397 0.91675 0.90863 0.92178 0.90975 0.90720 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.68 37.16 0.32 -1.97 16 2 C 0.13 1.81 2.30 -67.43 -0.16 1.65 16 3 H 0.11 1.60 6.94 -51.93 -0.36 1.24 16 4 N -1.00 -15.47 2.55 -106.04 -0.27 -15.74 16 5 S 2.68 51.34 5.74 -107.50 -0.62 50.72 16 6 O -0.97 -19.76 15.89 -57.17 -0.91 -20.67 16 7 O -0.97 -20.12 15.88 -57.17 -0.91 -21.03 16 8 C -0.63 -13.84 5.97 -39.66 -0.24 -14.08 16 9 C -0.15 -3.23 9.53 -39.29 -0.37 -3.61 16 10 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 11 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 12 C 0.09 2.38 5.57 -106.82 -0.60 1.79 16 13 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 14 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 16 N -0.79 -19.38 10.97 55.55 0.61 -18.77 16 17 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.28 -5.29 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C -0.12 -2.97 9.26 -38.88 -0.36 -3.33 16 22 C 0.08 1.11 6.31 -3.53 -0.02 1.09 16 23 C 0.05 0.56 6.60 37.31 0.25 0.80 16 24 O -0.37 -4.62 9.87 -35.23 -0.35 -4.97 16 25 C 0.11 1.33 0.81 -90.47 -0.07 1.26 16 26 C -0.18 -2.12 8.09 37.16 0.30 -1.82 16 27 C -0.14 -1.39 8.30 37.16 0.31 -1.08 16 28 H 0.06 0.88 7.20 -51.93 -0.37 0.51 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 31 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 34 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 35 H 0.11 2.51 7.60 -52.48 -0.40 2.11 16 36 H 0.10 1.29 6.95 -51.93 -0.36 0.93 16 37 H 0.08 0.97 7.64 -51.93 -0.40 0.57 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.64 6.25 -51.93 -0.32 0.31 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.76 6.11 -51.93 -0.32 0.44 16 43 H 0.07 0.71 6.34 -51.92 -0.33 0.38 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -29.46 364.43 -10.21 -39.67 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.42 Total: 8.40 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: -1.81 Total: -35.93 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.34 Total: -34.51 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -2.16 Total: -46.67 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 51.34 SS G_CDS: -0.62 Total: 50.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.46 -10.21 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.338 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds