Wall clock time and date at job start Tue Mar 31 2020 23:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.67402 * 2 1 4 4 N 1.47149 * 109.67959 * 120.55055 * 2 1 3 5 5 S 1.65597 * 120.98453 * 249.21060 * 4 2 1 6 6 O 1.42102 * 106.39889 * 203.54533 * 5 4 2 7 7 O 1.42099 * 106.40329 * 336.46209 * 5 4 2 8 8 C 1.76194 * 107.21813 * 90.00313 * 5 4 2 9 9 C 1.38658 * 119.87493 * 90.00336 * 8 5 4 10 10 C 1.38618 * 120.50145 * 179.97438 * 9 8 5 11 11 C 1.37635 * 120.24640 * 0.02562 * 10 9 8 12 12 C 1.40702 * 119.74645 * 359.97438 * 11 10 9 13 13 C 1.41398 * 120.24344 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99485 * 155.19069 * 13 12 11 15 15 C 1.39944 * 120.00102 * 335.18362 * 13 12 11 16 16 N 1.30825 * 119.99945 * 342.34441 * 15 13 12 17 17 Si 1.86803 * 119.99741 * 162.33785 * 15 13 12 18 18 H 1.48495 * 109.47055 * 60.00704 * 17 15 13 19 19 H 1.48502 * 109.46931 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47148 * 300.00184 * 17 15 13 21 21 C 1.37593 * 119.87898 * 269.72317 * 8 5 4 22 22 C 1.47154 * 118.03387 * 69.19497 * 4 2 1 23 23 C 1.53291 * 108.38830 * 50.53009 * 22 4 2 24 24 O 1.42963 * 109.22325 * 307.70116 * 23 22 4 25 25 C 1.42963 * 114.16871 * 62.57535 * 24 23 22 26 26 C 1.53005 * 109.50904 * 57.34564 * 25 24 23 27 27 C 1.52996 * 109.51392 * 177.49447 * 25 24 23 28 28 H 1.08998 * 109.47102 * 180.51972 * 1 2 3 29 29 H 1.08998 * 109.47470 * 300.51741 * 1 2 3 30 30 H 1.09000 * 109.47001 * 60.51939 * 1 2 3 31 31 H 1.08001 * 119.75494 * 359.94891 * 9 8 5 32 32 H 1.07997 * 119.87909 * 179.97438 * 10 9 8 33 33 H 1.07999 * 120.13073 * 179.97438 * 11 10 9 34 34 H 0.97006 * 119.99287 * 179.97438 * 16 15 13 35 35 H 1.08005 * 120.12099 * 0.02562 * 21 8 5 36 36 H 1.09002 * 109.68266 * 170.25454 * 22 4 2 37 37 H 1.09005 * 109.68024 * 290.80395 * 22 4 2 38 38 H 1.09002 * 109.51727 * 187.77695 * 23 22 4 39 39 H 1.09001 * 109.51257 * 67.62354 * 23 22 4 40 40 H 1.09007 * 109.46819 * 59.99997 * 26 25 24 41 41 H 1.09002 * 109.47197 * 179.97438 * 26 25 24 42 42 H 1.08999 * 109.46997 * 300.00020 * 26 25 24 43 43 H 1.09009 * 109.47101 * 60.00440 * 27 25 24 44 44 H 1.08999 * 109.47044 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.47783 * 300.00740 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 7 2.0255 -0.7043 1.1932 5 16 2.7871 0.1170 2.4130 6 8 3.5967 -0.8332 3.0919 7 8 3.3050 1.3065 1.8335 8 6 1.5454 0.6206 3.5571 9 6 1.1991 -0.2112 4.6110 10 6 0.2245 0.1723 5.5191 11 6 -0.4112 1.3855 5.3829 12 6 -0.0678 2.2377 4.3172 13 6 -0.7137 3.4866 4.1676 14 1 -0.2197 4.2905 3.6421 15 6 -1.9932 3.6810 4.7002 16 7 -2.7308 2.6499 5.0231 17 14 -2.6475 5.4127 4.9503 18 1 -2.6916 6.1185 3.6446 19 1 -4.0156 5.3468 5.5243 20 1 -1.7555 6.1493 5.8815 21 6 0.9272 1.8404 3.4048 22 6 1.8240 -2.1599 1.2706 23 6 2.3260 -2.7877 -0.0346 24 8 1.7168 -2.1205 -1.1426 25 6 2.0462 -0.7329 -1.2434 26 6 3.5651 -0.5738 -1.3365 27 6 1.3919 -0.1419 -2.4937 28 1 -0.3633 -1.0276 0.0093 29 1 -0.3634 0.5218 0.8853 30 1 -0.3633 0.5057 -0.8946 31 1 1.6921 -1.1653 4.7252 32 1 -0.0377 -0.4836 6.3360 33 1 -1.1705 1.6822 6.0911 34 1 -3.6176 2.7848 5.3927 35 1 1.2015 2.4885 2.5856 36 1 2.3863 -2.5641 2.1124 37 1 0.7636 -2.3774 1.3986 38 1 2.0610 -3.8448 -0.0558 39 1 3.4091 -2.6818 -0.0966 40 1 3.9321 -1.0991 -2.2184 41 1 3.8156 0.4842 -1.4138 42 1 4.0298 -0.9933 -0.4442 43 1 0.3097 -0.2539 -2.4249 44 1 1.6438 0.9159 -2.5701 45 1 1.7560 -0.6665 -3.3770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:49 Heat of formation + Delta-G solvation = -117.898410 kcal Electronic energy + Delta-G solvation = -29127.454785 eV Core-core repulsion = 25235.892661 eV Total energy + Delta-G solvation = -3891.562124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12358 -39.47243 -38.41892 -36.99199 -36.11427 -35.68629 -34.96374 -31.94248 -31.63435 -30.97319 -29.30043 -28.14054 -27.36332 -24.54080 -24.07948 -23.58939 -22.82243 -20.69594 -20.04366 -19.44341 -18.75500 -17.85933 -17.69391 -17.01135 -16.74958 -16.51662 -16.28452 -16.07896 -15.76874 -15.29112 -15.13053 -14.91770 -14.46588 -14.32348 -13.96935 -13.75601 -13.53764 -13.37789 -13.30001 -13.17909 -13.13164 -13.06780 -13.01440 -12.91232 -12.84766 -12.71006 -12.62381 -12.44902 -12.27756 -12.23579 -11.90934 -11.59823 -11.43339 -11.16677 -11.10181 -11.05669 -9.94760 -9.68851 -9.58388 -8.74797 -6.47137 -0.62149 0.37168 0.82249 1.36440 1.45437 1.48967 1.93151 2.16292 2.53593 2.69191 2.79073 3.24585 3.47136 3.57731 3.75721 3.94515 3.98265 4.16473 4.21499 4.26209 4.33634 4.39373 4.42863 4.57483 4.64556 4.75036 4.79875 4.80608 4.85575 4.87145 4.93196 4.96443 5.02254 5.04435 5.09236 5.17348 5.24850 5.35812 5.37922 5.42960 5.52649 5.58297 5.85602 5.91089 6.07536 6.26806 6.49902 6.77663 6.82203 8.23000 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003991 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.232481 B = 7013.802851 C = 7762.576080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.097 0.903 4 N -0.989 5.989 5 S 2.707 3.293 6 O -0.982 6.982 7 O -0.987 6.987 8 C -0.640 4.640 9 C -0.151 4.151 10 C -0.122 4.122 11 C -0.141 4.141 12 C 0.065 3.935 13 C -0.497 4.497 14 H 0.079 0.921 15 C 0.040 3.960 16 N -0.820 5.820 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.262 1.262 21 C -0.143 4.143 22 C 0.075 3.925 23 C 0.050 3.950 24 O -0.372 6.372 25 C 0.112 3.888 26 C -0.182 4.182 27 C -0.139 4.139 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.292 0.708 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -8.057 -11.345 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 H 0.115 0.885 4 N -0.828 5.828 5 S 2.803 3.197 6 O -0.973 6.973 7 O -0.977 6.977 8 C -0.728 4.728 9 C -0.172 4.172 10 C -0.141 4.141 11 C -0.161 4.161 12 C 0.062 3.938 13 C -0.526 4.526 14 H 0.097 0.903 15 C -0.176 4.176 16 N -0.445 5.445 17 Si 0.802 3.198 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.186 1.186 21 C -0.164 4.164 22 C -0.050 4.050 23 C -0.028 4.028 24 O -0.291 6.291 25 C 0.071 3.929 26 C -0.239 4.239 27 C -0.197 4.197 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.705 -8.068 -11.316 14.672 hybrid contribution -1.003 1.038 1.188 1.869 sum 3.701 -7.031 -10.128 12.873 Atomic orbital electron populations 1.22124 0.93990 1.03090 1.02519 1.21857 0.95670 0.96703 0.84489 0.88480 1.57716 1.76473 1.16809 1.31828 1.01177 0.73705 0.72299 0.72558 1.93472 1.66261 1.62731 1.74795 1.93476 1.78068 1.48461 1.77690 1.30314 1.21604 1.04782 1.16142 1.20426 1.00616 0.99515 0.96642 1.21135 0.96736 0.96794 0.99431 1.21633 1.00962 0.95449 0.98070 1.18021 0.91379 0.93757 0.90623 1.19823 1.01124 0.98150 1.33507 0.90320 1.26719 0.96115 1.03041 0.91721 1.69811 1.09906 1.33975 1.30842 0.85252 0.77808 0.76847 0.79900 1.18248 1.18878 1.18631 1.20787 1.00649 0.95030 0.99896 1.22389 1.03453 0.77954 1.01172 1.23069 0.97845 0.97814 0.84093 1.87956 1.71908 1.21454 1.47785 1.21822 0.94649 0.82143 0.94333 1.22452 0.95246 1.03542 1.02700 1.21881 1.01716 1.01333 0.94739 0.91274 0.94345 0.89151 0.85291 0.85547 0.86875 0.89697 0.87432 0.87742 0.89915 0.84918 0.91988 0.89755 0.90887 0.93361 0.90835 0.89763 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 8.68 71.98 0.62 -3.74 16 2 C 0.12 3.30 2.30 44.96 0.10 3.40 16 3 H 0.10 2.90 6.94 -2.39 -0.02 2.88 16 4 N -0.99 -29.91 2.55 -489.39 -1.25 -31.16 16 5 S 2.71 103.04 5.74 -56.49 -0.32 102.72 16 6 O -0.98 -38.87 15.89 -128.00 -2.03 -40.91 16 7 O -0.99 -41.40 15.88 -128.00 -2.03 -43.44 16 8 C -0.64 -28.45 5.97 22.22 0.13 -28.32 16 9 C -0.15 -6.55 9.53 22.46 0.21 -6.33 16 10 C -0.12 -5.48 10.02 22.22 0.22 -5.26 16 11 C -0.14 -7.22 8.70 22.73 0.20 -7.02 16 12 C 0.07 3.49 5.57 -21.29 -0.12 3.37 16 13 C -0.50 -26.23 9.05 23.46 0.21 -26.02 16 14 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 15 C 0.04 1.94 5.14 85.26 0.44 2.38 16 16 N -0.82 -40.90 10.97 21.83 0.24 -40.66 16 17 Si 0.98 36.86 29.59 68.60 2.03 38.89 16 18 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 20 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 21 C -0.14 -7.06 9.26 22.73 0.21 -6.85 16 22 C 0.08 1.83 6.31 86.35 0.55 2.38 16 23 C 0.05 0.98 6.60 72.08 0.48 1.46 16 24 O -0.37 -8.31 9.87 -148.98 -1.47 -9.78 16 25 C 0.11 2.50 0.81 -10.70 -0.01 2.49 16 26 C -0.18 -3.91 8.09 71.98 0.58 -3.33 16 27 C -0.14 -2.42 8.30 71.98 0.60 -1.82 16 28 H 0.07 1.81 7.20 -2.39 -0.02 1.80 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 2.04 6.35 -2.39 -0.02 2.03 16 31 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 32 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 34 H 0.29 13.12 8.30 -92.70 -0.77 12.35 16 35 H 0.11 5.20 7.60 -2.91 -0.02 5.17 16 36 H 0.10 2.47 6.95 -2.39 -0.02 2.45 16 37 H 0.08 1.93 7.64 -2.38 -0.02 1.91 16 38 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.20 6.25 -2.39 -0.01 1.18 16 40 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.14 6.11 -2.39 -0.01 1.13 16 43 H 0.07 1.26 6.34 -2.38 -0.02 1.24 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.32 364.43 0.59 -63.73 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 1.00 Total: 33.84 kcal Atomic # 6 Polarization: -77.66 SS G_CDS: 4.43 Total: -73.23 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.01 Total: -71.81 kcal Atomic # 8 Polarization: -88.59 SS G_CDS: -5.54 Total: -94.13 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 103.04 SS G_CDS: -0.32 Total: 102.72 kcal Total: -64.32 0.59 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.171 kcal (2) G-P(sol) polarization free energy of solvation -64.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds