Wall clock time and date at job start Tue Mar 31 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.67857 * 2 1 4 4 N 1.47148 * 109.68215 * 239.48640 * 2 1 3 5 5 S 1.65600 * 120.98290 * 9.71836 * 4 2 1 6 6 O 1.42099 * 106.40396 * 330.19518 * 5 4 2 7 7 O 1.42105 * 106.40297 * 197.27921 * 5 4 2 8 8 C 1.76199 * 107.21971 * 83.73873 * 5 4 2 9 9 C 1.38655 * 119.87720 * 270.02296 * 8 5 4 10 10 C 1.38615 * 120.50300 * 179.97438 * 9 8 5 11 11 C 1.37638 * 120.24430 * 359.67181 * 10 9 8 12 12 C 1.40695 * 119.74862 * 0.60281 * 11 10 9 13 13 C 1.41396 * 120.24890 * 179.69945 * 12 11 10 14 14 H 1.07994 * 120.00312 * 148.13818 * 13 12 11 15 15 C 1.39943 * 119.99338 * 328.13236 * 13 12 11 16 16 N 1.30817 * 120.00408 * 335.50502 * 15 13 12 17 17 Si 1.86803 * 119.99562 * 155.50746 * 15 13 12 18 18 H 1.48500 * 109.47318 * 89.99963 * 17 15 13 19 19 H 1.48503 * 109.47109 * 329.99547 * 17 15 13 20 20 H 1.48507 * 109.47111 * 210.00009 * 17 15 13 21 21 C 1.37603 * 119.87400 * 89.99845 * 8 5 4 22 22 C 1.47150 * 118.03622 * 189.99204 * 4 2 1 23 23 C 1.52892 * 108.60726 * 50.22630 * 22 4 2 24 24 O 1.42957 * 109.29501 * 307.93727 * 23 22 4 25 25 C 1.42968 * 114.16934 * 62.44439 * 24 23 22 26 26 C 1.52998 * 109.51252 * 177.49445 * 25 24 23 27 27 C 1.52999 * 109.55052 * 57.37111 * 25 24 23 28 28 H 1.08997 * 109.47386 * 184.39199 * 1 2 3 29 29 H 1.08998 * 109.47727 * 304.39772 * 1 2 3 30 30 H 1.09004 * 109.47071 * 64.39545 * 1 2 3 31 31 H 1.07997 * 119.74471 * 359.97438 * 9 8 5 32 32 H 1.07994 * 119.87270 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.12694 * 180.30040 * 11 10 9 34 34 H 0.97001 * 120.00392 * 354.63019 * 16 15 13 35 35 H 1.07998 * 120.12719 * 0.02562 * 21 8 5 36 36 H 1.08997 * 109.68490 * 170.00585 * 22 4 2 37 37 H 1.09001 * 109.68239 * 290.56015 * 22 4 2 38 38 H 1.08999 * 109.58071 * 187.92785 * 23 22 4 39 39 H 1.08992 * 109.40651 * 67.83995 * 23 22 4 40 40 H 1.08999 * 109.46858 * 179.75453 * 26 25 24 41 41 H 1.09010 * 109.47193 * 299.75095 * 26 25 24 42 42 H 1.08997 * 109.47392 * 59.74859 * 26 25 24 43 43 H 1.09004 * 109.47121 * 300.23014 * 27 25 24 44 44 H 1.09002 * 109.47578 * 60.22382 * 27 25 24 45 45 H 1.08998 * 109.47321 * 180.22557 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 7 2.0256 -0.7035 -1.1936 5 16 0.9951 -1.1439 -2.4129 6 8 -0.2689 -1.3748 -1.8062 7 8 1.6788 -2.1241 -3.1817 8 6 0.7957 0.2594 -3.4597 9 6 -0.2190 1.1701 -3.2081 10 6 -0.3873 2.2788 -4.0229 11 6 0.4576 2.4906 -5.0886 12 6 1.4872 1.5700 -5.3570 13 6 2.3573 1.7739 -6.4527 14 1 3.3829 1.4403 -6.3972 15 6 1.8892 2.4079 -7.6092 16 7 0.6131 2.3858 -7.8964 17 14 3.0867 3.2856 -8.7428 18 1 3.5873 2.3337 -9.7668 19 1 4.2293 3.8052 -7.9492 20 1 2.3954 4.4159 -9.4136 21 6 1.6480 0.4475 -4.5235 22 6 3.4629 -1.0096 -1.2691 23 6 3.8860 -1.6895 0.0333 24 8 3.4635 -0.8915 1.1417 25 6 2.0462 -0.7338 1.2429 26 6 1.7108 0.0811 2.4936 27 6 1.3833 -2.1095 1.3363 28 1 -0.3634 -1.0246 0.0787 29 1 -0.3634 0.5805 0.8479 30 1 -0.3633 0.4441 -0.9268 31 1 -0.8833 1.0145 -2.3709 32 1 -1.1813 2.9815 -3.8179 33 1 0.3278 3.3576 -5.7193 34 1 0.0022 1.8655 -7.3515 35 1 2.4377 -0.2632 -4.7176 36 1 3.6524 -1.6778 -2.1091 37 1 4.0285 -0.0868 -1.3987 38 1 4.9705 -1.7964 0.0540 39 1 3.4217 -2.6737 0.0954 40 1 0.6303 0.2046 2.5678 41 1 2.0782 -0.4413 3.3770 42 1 2.1848 1.0603 2.4273 43 1 1.6242 -2.6902 0.4458 44 1 1.7508 -2.6308 2.2203 45 1 0.3026 -1.9879 1.4094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:53 Heat of formation + Delta-G solvation = -87.665996 kcal Electronic energy + Delta-G solvation = -29167.213170 eV Core-core repulsion = 25276.962022 eV Total energy + Delta-G solvation = -3890.251149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.20425 -37.92512 -37.15985 -35.55087 -35.08828 -34.22795 -34.05893 -30.12858 -29.92285 -29.49045 -28.20367 -27.43909 -25.31348 -24.06379 -22.82023 -21.96168 -21.28652 -19.65016 -18.81992 -18.04356 -17.14826 -16.91714 -16.31415 -15.98853 -15.38462 -14.98263 -14.94127 -14.72184 -14.49292 -14.23069 -13.92744 -13.50150 -13.38393 -13.14281 -12.78249 -12.65709 -12.45975 -12.26619 -12.14434 -11.95919 -11.89165 -11.70822 -11.54895 -11.49750 -11.44634 -11.37609 -11.14059 -11.09664 -10.73434 -10.51980 -10.47069 -10.28833 -9.89650 -9.77725 -9.65753 -9.13498 -8.69583 -8.28345 -7.88440 -7.34569 -4.64492 0.81014 1.97222 2.52490 3.07759 3.13302 3.25920 3.28278 3.60989 3.92024 4.12279 4.33026 4.46111 4.62034 4.68164 4.85029 4.94031 5.05884 5.14054 5.15292 5.24109 5.35854 5.42347 5.51086 5.56016 5.61171 5.70624 5.80149 5.82350 5.83585 5.89507 5.94036 6.06132 6.17359 6.21281 6.39422 6.47136 6.53881 6.63808 6.78827 6.99602 7.11263 7.18375 7.44499 7.48654 7.60998 7.87626 7.98812 8.47349 8.66386 9.92543 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003569 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.446502 B = 7843.543205 C = 8200.257597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.135 3.865 3 H 0.081 0.919 4 N -0.997 5.997 5 S 2.684 3.316 6 O -0.965 6.965 7 O -0.971 6.971 8 C -0.623 4.623 9 C -0.162 4.162 10 C -0.101 4.101 11 C -0.167 4.167 12 C 0.080 3.920 13 C -0.526 4.526 14 H 0.080 0.920 15 C 0.039 3.961 16 N -0.797 5.797 17 Si 1.068 2.932 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.273 1.273 21 C -0.120 4.120 22 C 0.082 3.918 23 C 0.050 3.950 24 O -0.371 6.371 25 C 0.106 3.894 26 C -0.137 4.137 27 C -0.181 4.181 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.297 0.703 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -3.588 15.430 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.029 3.971 3 H 0.099 0.901 4 N -0.835 5.835 5 S 2.783 3.217 6 O -0.955 6.955 7 O -0.962 6.962 8 C -0.715 4.715 9 C -0.183 4.183 10 C -0.121 4.121 11 C -0.187 4.187 12 C 0.076 3.924 13 C -0.554 4.554 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.420 5.420 17 Si 0.891 3.109 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.197 1.197 21 C -0.141 4.141 22 C -0.043 4.043 23 C -0.029 4.029 24 O -0.290 6.290 25 C 0.066 3.934 26 C -0.195 4.195 27 C -0.238 4.238 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.908 -3.443 14.057 14.762 hybrid contribution -0.156 -0.254 0.772 0.828 sum 2.752 -3.697 14.830 15.529 Atomic orbital electron populations 1.23004 0.92095 1.05993 1.03829 1.21625 0.95457 0.96024 0.84023 0.90106 1.57890 1.18718 1.74214 1.32671 1.01967 0.72889 0.74567 0.72317 1.93602 1.41101 1.85447 1.75353 1.93500 1.74935 1.57626 1.70093 1.29919 1.07270 1.20462 1.13843 1.20136 0.99283 0.96794 1.02074 1.20749 0.98489 0.96974 0.95875 1.21424 0.99336 0.99375 0.98580 1.17748 0.92045 0.89721 0.92838 1.20555 0.99263 1.35970 0.99642 0.90162 1.27055 0.98494 0.94467 0.98236 1.70452 1.04454 1.30025 1.37055 0.83601 0.74812 0.77086 0.75364 1.20093 1.19950 1.19745 1.20816 0.99384 0.97328 0.96605 1.22055 0.80656 1.01831 0.99786 1.22850 1.00388 0.94059 0.85579 1.87958 1.21499 1.71908 1.47636 1.21803 0.81466 0.95293 0.94882 1.21780 1.02055 1.00055 0.95585 1.22474 1.02208 0.96843 1.02317 0.88059 0.91506 0.90093 0.86972 0.88092 0.87298 0.89006 0.87020 0.87743 0.90472 0.87737 0.92369 0.90521 0.91604 0.91589 0.92203 0.91806 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 6.83 37.16 0.25 -2.31 16 2 C 0.14 1.81 2.86 -67.43 -0.19 1.61 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 N -1.00 -15.14 2.87 -106.27 -0.30 -15.44 16 5 S 2.68 50.15 5.32 -107.50 -0.57 49.58 16 6 O -0.96 -18.24 12.41 -57.17 -0.71 -18.95 16 7 O -0.97 -20.31 15.75 -57.17 -0.90 -21.21 16 8 C -0.62 -13.51 5.97 -39.66 -0.24 -13.74 16 9 C -0.16 -3.42 8.98 -39.29 -0.35 -3.77 16 10 C -0.10 -2.21 10.02 -39.66 -0.40 -2.61 16 11 C -0.17 -4.07 8.03 -38.87 -0.31 -4.38 16 12 C 0.08 2.06 5.15 -106.82 -0.55 1.51 16 13 C -0.53 -13.56 8.96 -37.74 -0.34 -13.89 16 14 H 0.08 2.00 7.95 -52.49 -0.42 1.58 16 15 C 0.04 0.96 4.92 -17.35 -0.09 0.88 16 16 N -0.80 -20.73 12.56 55.55 0.70 -20.03 16 17 Si 1.07 20.95 30.00 -169.99 -5.10 15.85 16 18 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 C -0.12 -2.89 9.26 -38.87 -0.36 -3.25 16 22 C 0.08 1.09 6.70 -3.74 -0.03 1.07 16 23 C 0.05 0.56 6.58 37.10 0.24 0.80 16 24 O -0.37 -4.62 10.23 -35.23 -0.36 -4.98 16 25 C 0.11 1.24 0.89 -90.47 -0.08 1.16 16 26 C -0.14 -1.26 8.66 37.16 0.32 -0.94 16 27 C -0.18 -2.02 7.53 37.16 0.28 -1.74 16 28 H 0.10 1.42 4.36 -51.93 -0.23 1.19 16 29 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 30 H 0.08 1.23 3.47 -51.93 -0.18 1.05 16 31 H 0.11 2.09 5.46 -52.49 -0.29 1.80 16 32 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.11 2.69 6.96 -52.49 -0.37 2.32 16 34 H 0.30 7.95 6.89 -40.82 -0.28 7.67 16 35 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 36 H 0.10 1.40 6.82 -51.93 -0.35 1.04 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.64 6.25 -51.93 -0.32 0.31 16 40 H 0.08 0.60 6.81 -51.93 -0.35 0.24 16 41 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.73 6.11 -51.93 -0.32 0.42 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.82 6.24 -51.93 -0.32 0.50 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -29.87 350.58 -9.74 -39.61 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.95 Total: 9.90 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: -1.83 Total: -39.60 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.39 Total: -35.48 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.97 Total: -45.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.10 Total: 15.85 kcal Atomic # 16 Polarization: 50.15 SS G_CDS: -0.57 Total: 49.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.87 -9.74 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.054 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds