Wall clock time and date at job start Tue Mar 31 2020 23:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47357 * 2 1 4 4 N 1.46502 * 109.47132 * 119.99883 * 2 1 3 5 5 S 1.65596 * 120.00046 * 265.00276 * 4 2 1 6 6 O 1.42103 * 106.40432 * 178.54076 * 5 4 2 7 7 O 1.42100 * 106.40137 * 311.45667 * 5 4 2 8 8 C 1.76200 * 107.22203 * 64.99675 * 5 4 2 9 9 C 1.38657 * 119.87496 * 269.72904 * 8 5 4 10 10 C 1.38615 * 120.50004 * 179.71705 * 9 8 5 11 11 C 1.37634 * 120.24608 * 0.55365 * 10 9 8 12 12 C 1.40699 * 119.74700 * 359.72511 * 11 10 9 13 13 C 1.41394 * 120.24316 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99627 * 204.37091 * 13 12 11 15 15 C 1.39945 * 120.00216 * 24.37118 * 13 12 11 16 16 N 1.30826 * 119.99817 * 17.88301 * 15 13 12 17 17 Si 1.86794 * 120.00099 * 197.87581 * 15 13 12 18 18 H 1.48505 * 109.47280 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47244 * 120.00271 * 17 15 13 20 20 H 1.48495 * 109.47539 * 240.00077 * 17 15 13 21 21 C 1.37601 * 119.87579 * 89.99898 * 8 5 4 22 22 C 1.52996 * 109.47087 * 239.99833 * 2 1 3 23 23 C 1.53182 * 109.54359 * 179.82533 * 22 2 1 24 24 C 1.53109 * 109.16036 * 183.24132 * 23 22 2 25 25 O 1.42902 * 109.48257 * 57.47256 * 24 23 22 26 26 C 1.42905 * 114.09886 * 298.88677 * 25 24 23 27 27 C 1.53096 * 109.41229 * 61.16510 * 26 25 24 28 28 H 1.08997 * 109.47076 * 300.00583 * 1 2 3 29 29 H 1.09005 * 109.46532 * 59.99993 * 1 2 3 30 30 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00289 * 84.99806 * 4 2 1 32 32 H 1.08004 * 119.75007 * 359.97438 * 9 8 5 33 33 H 1.07999 * 119.87516 * 180.25624 * 10 9 8 34 34 H 1.08005 * 120.13015 * 179.74238 * 11 10 9 35 35 H 0.97004 * 119.99890 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.12335 * 359.97438 * 21 8 5 37 37 H 1.08998 * 109.54866 * 299.99742 * 22 2 1 38 38 H 1.08998 * 109.52338 * 303.05829 * 23 22 2 39 39 H 1.09003 * 109.52550 * 63.24384 * 23 22 2 40 40 H 1.09000 * 109.40474 * 297.49521 * 24 23 22 41 41 H 1.08994 * 109.48063 * 177.50321 * 24 23 22 42 42 H 1.09002 * 109.48148 * 301.18078 * 26 25 24 43 43 H 1.08997 * 109.47825 * 181.14403 * 26 25 24 44 44 H 1.08998 * 109.51830 * 182.48237 * 27 26 25 45 45 H 1.08996 * 109.52395 * 62.29241 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 2.8124 -0.7697 3.5316 7 8 3.2436 1.2443 2.1156 8 6 0.9275 0.9148 3.1474 9 6 0.5559 2.1751 2.7046 10 6 -0.6124 2.7651 3.1612 11 6 -1.4113 2.1089 4.0696 12 6 -1.0413 0.8320 4.5304 13 6 -1.8545 0.1482 5.4632 14 1 -1.4232 -0.6061 6.1047 15 6 -3.2182 0.4486 5.5552 16 7 -3.8158 1.0819 4.5788 17 14 -4.1852 -0.0546 7.0721 18 1 -3.2844 -0.7523 8.0245 19 1 -4.7511 1.1548 7.7221 20 1 -5.2888 -0.9657 6.6759 21 6 0.1440 0.2403 4.0555 22 6 2.0400 -0.7213 -1.2492 23 6 3.5718 -0.7184 -1.2531 24 6 4.0723 -1.3700 -2.5451 25 8 3.5403 -0.6677 -3.6701 26 6 2.1132 -0.6793 -3.7437 27 6 1.5341 0.0021 -2.5010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.1110 -1.6561 1.1950 32 1 1.1793 2.6993 1.9953 33 1 -0.8942 3.7455 2.8064 34 1 -2.3191 2.5721 4.4273 35 1 -4.7612 1.2898 4.6424 36 1 0.4374 -0.7396 4.4021 37 1 1.6774 -1.7492 -1.2504 38 1 3.9343 0.3081 -1.2003 39 1 3.9393 -1.2800 -0.3942 40 1 3.7446 -2.4091 -2.5771 41 1 5.1611 -1.3309 -2.5737 42 1 1.7600 -1.7094 -3.7914 43 1 1.7908 -0.1426 -4.6360 44 1 0.4456 -0.0448 -2.5339 45 1 1.8541 1.0437 -2.4742 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:31 Heat of formation + Delta-G solvation = -142.359329 kcal Electronic energy + Delta-G solvation = -28089.037148 eV Core-core repulsion = 24196.414319 eV Total energy + Delta-G solvation = -3892.622829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54981 -39.45974 -38.33419 -37.69076 -36.91739 -35.67054 -33.71492 -32.12367 -31.90706 -31.58347 -30.26741 -27.33988 -26.20633 -24.30763 -23.64958 -22.83861 -22.56352 -21.22871 -20.51538 -19.63222 -18.53010 -17.76637 -17.45913 -16.89618 -16.87866 -16.73327 -16.56174 -16.09611 -15.67936 -15.26679 -15.07725 -15.06222 -14.53726 -14.46223 -14.30480 -14.07851 -13.69111 -13.48518 -13.31335 -13.20158 -13.08589 -13.04321 -12.95365 -12.81461 -12.62990 -12.55137 -12.35047 -12.21820 -12.16362 -11.69072 -11.56105 -11.50181 -11.30891 -11.15542 -11.13347 -10.62289 -10.26006 -9.81881 -9.54338 -8.73423 -6.44601 -0.48506 0.41751 0.84953 1.37140 1.43987 1.51621 2.12359 2.17291 2.55398 2.78682 3.04990 3.43793 3.53255 3.59826 3.83173 3.87908 4.13291 4.24360 4.31602 4.33935 4.36412 4.45072 4.47005 4.56055 4.65933 4.80464 4.85119 4.85623 4.87169 4.91060 4.97970 4.99431 5.07011 5.17205 5.18865 5.21258 5.28856 5.41473 5.46165 5.52215 5.57547 5.89888 5.94624 6.10659 6.15248 6.34200 6.53305 6.80248 6.85415 8.24347 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018138 B = 0.003100 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.316932 B = 9030.584506 C = 9601.541221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.155 3.845 3 H 0.083 0.917 4 N -1.099 6.099 5 S 2.715 3.285 6 O -0.998 6.998 7 O -0.986 6.986 8 C -0.633 4.633 9 C -0.143 4.143 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.065 3.935 13 C -0.499 4.499 14 H 0.076 0.924 15 C 0.040 3.960 16 N -0.819 5.819 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.157 4.157 24 C 0.061 3.939 25 O -0.406 6.406 26 C 0.059 3.941 27 C -0.151 4.151 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.426 0.574 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.291 0.709 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -4.115 -14.141 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.049 3.951 3 H 0.101 0.899 4 N -0.860 5.860 5 S 2.808 3.192 6 O -0.989 6.989 7 O -0.976 6.976 8 C -0.722 4.722 9 C -0.164 4.164 10 C -0.140 4.140 11 C -0.159 4.159 12 C 0.062 3.938 13 C -0.528 4.528 14 H 0.094 0.906 15 C -0.176 4.176 16 N -0.445 5.445 17 Si 0.801 3.199 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.188 1.188 21 C -0.164 4.164 22 C -0.105 4.105 23 C -0.194 4.194 24 C -0.015 4.015 25 O -0.325 6.325 26 C -0.018 4.018 27 C -0.189 4.189 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.263 0.737 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.373 -3.673 -13.994 15.810 hybrid contribution -1.542 -0.381 1.247 2.020 sum 4.831 -4.054 -12.747 14.222 Atomic orbital electron populations 1.22428 0.94904 1.03254 1.03077 1.20927 0.94086 0.96279 0.83846 0.89851 1.55274 1.83867 1.20019 1.26879 1.00860 0.73517 0.72633 0.72229 1.93500 1.82284 1.62942 1.60142 1.93499 1.65242 1.56821 1.82053 1.30168 1.22320 1.07269 1.12432 1.20380 0.98046 0.94481 1.03446 1.21107 0.94975 0.99704 0.98193 1.21617 1.00095 0.94620 0.99614 1.17999 0.91910 0.92088 0.91820 1.19863 0.94062 1.20406 1.18437 0.90583 1.26683 0.98649 0.92991 0.99281 1.69813 1.12812 1.31184 1.30648 0.85179 0.77886 0.79119 0.77717 1.18515 1.18765 1.18823 1.20805 0.97445 0.98853 0.99304 1.21424 0.95290 1.00795 0.92974 1.22288 0.95735 1.02310 0.99103 1.22660 0.99387 0.95089 0.84415 1.87903 1.21728 1.76352 1.46544 1.22719 0.80043 1.00748 0.98244 1.22310 1.02317 1.00391 0.93918 0.93632 0.89451 0.91430 0.73738 0.85389 0.85709 0.87015 0.89773 0.87494 0.88833 0.92075 0.90347 0.91854 0.88262 0.92007 0.87694 0.88740 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 9.17 71.98 0.66 -3.69 16 2 C 0.16 3.62 2.49 44.99 0.11 3.73 16 3 H 0.08 2.12 7.50 -2.39 -0.02 2.10 16 4 N -1.10 -28.85 4.78 -169.39 -0.81 -29.66 16 5 S 2.71 97.66 5.72 -56.49 -0.32 97.34 16 6 O -1.00 -41.17 17.27 -128.00 -2.21 -43.38 16 7 O -0.99 -38.13 16.60 -128.00 -2.12 -40.25 16 8 C -0.63 -26.78 5.05 22.22 0.11 -26.66 16 9 C -0.14 -5.87 8.61 22.46 0.19 -5.67 16 10 C -0.12 -5.22 10.02 22.22 0.22 -5.00 16 11 C -0.14 -6.95 8.70 22.73 0.20 -6.75 16 12 C 0.07 3.40 5.58 -21.29 -0.12 3.28 16 13 C -0.50 -26.15 9.05 23.46 0.21 -25.94 16 14 H 0.08 3.92 7.91 -2.91 -0.02 3.89 16 15 C 0.04 1.92 5.14 85.26 0.44 2.35 16 16 N -0.82 -40.30 10.95 21.83 0.24 -40.07 16 17 Si 0.98 36.82 29.59 68.60 2.03 38.85 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 C -0.14 -6.90 9.26 22.73 0.21 -6.69 16 22 C -0.08 -1.50 1.97 -10.68 -0.02 -1.52 16 23 C -0.16 -2.94 5.22 30.69 0.16 -2.78 16 24 C 0.06 1.00 6.84 72.02 0.49 1.49 16 25 O -0.41 -7.94 10.77 -148.98 -1.60 -9.54 16 26 C 0.06 0.86 6.84 72.01 0.49 1.35 16 27 C -0.15 -2.34 4.98 30.69 0.15 -2.19 16 28 H 0.04 1.44 6.18 -2.39 -0.01 1.43 16 29 H 0.09 1.73 6.51 -2.38 -0.02 1.71 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.43 8.99 8.84 -96.75 -0.85 8.14 16 32 H 0.13 4.62 7.59 -2.91 -0.02 4.60 16 33 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.11 5.74 6.15 -2.91 -0.02 5.72 16 35 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 36 H 0.11 5.07 7.60 -2.91 -0.02 5.05 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.42 7.72 -2.39 -0.02 1.40 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.22 6.63 -2.39 -0.02 1.20 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.36 370.05 -1.13 -66.49 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.15 Total: 34.90 kcal Atomic # 6 Polarization: -78.21 SS G_CDS: 3.52 Total: -74.69 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -0.57 Total: -69.72 kcal Atomic # 8 Polarization: -87.24 SS G_CDS: -5.94 Total: -93.18 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 97.66 SS G_CDS: -0.32 Total: 97.34 kcal Total: -65.36 -1.13 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.868 kcal (2) G-P(sol) polarization free energy of solvation -65.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds