Wall clock time and date at job start Tue Mar 31 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46829 * 2 1 4 4 N 1.46495 * 109.47484 * 239.99830 * 2 1 3 5 5 S 1.65598 * 120.00088 * 94.99566 * 4 2 1 6 6 O 1.42101 * 106.40503 * 178.54551 * 5 4 2 7 7 O 1.42108 * 106.40257 * 311.46233 * 5 4 2 8 8 C 1.76194 * 107.22046 * 65.00334 * 5 4 2 9 9 C 1.38662 * 119.87646 * 269.72909 * 8 5 4 10 10 C 1.38617 * 120.50316 * 179.71631 * 9 8 5 11 11 C 1.37642 * 120.24254 * 0.55687 * 10 9 8 12 12 C 1.40693 * 119.74591 * 359.71844 * 11 10 9 13 13 C 1.41399 * 120.24426 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00530 * 155.25641 * 13 12 11 15 15 C 1.39954 * 119.99720 * 335.26410 * 13 12 11 16 16 N 1.30826 * 119.99879 * 342.23219 * 15 13 12 17 17 Si 1.86800 * 119.99884 * 162.23909 * 15 13 12 18 18 H 1.48498 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47147 * 119.99494 * 17 15 13 20 20 H 1.48496 * 109.46919 * 239.99572 * 17 15 13 21 21 C 1.37594 * 119.87836 * 89.99903 * 8 5 4 22 22 C 1.52998 * 109.47443 * 119.99402 * 2 1 3 23 23 C 1.53175 * 109.54338 * 300.00447 * 22 2 1 24 24 C 1.53099 * 109.21341 * 176.87696 * 23 22 2 25 25 O 1.42903 * 109.41268 * 302.35735 * 24 23 22 26 26 C 1.42900 * 114.09999 * 61.16078 * 25 24 23 27 27 C 1.53093 * 109.41279 * 298.84152 * 26 25 24 28 28 H 1.08995 * 109.46738 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46962 * 299.99858 * 1 2 3 30 30 H 1.08996 * 109.47435 * 60.00260 * 1 2 3 31 31 H 0.97003 * 119.99946 * 275.00345 * 4 2 1 32 32 H 1.07992 * 119.74640 * 359.97438 * 9 8 5 33 33 H 1.07995 * 119.87949 * 180.25795 * 10 9 8 34 34 H 1.08002 * 120.12091 * 179.74780 * 11 10 9 35 35 H 0.97003 * 119.99747 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12630 * 359.97438 * 21 8 5 37 37 H 1.08998 * 109.61923 * 179.78020 * 22 2 1 38 38 H 1.08998 * 109.52333 * 56.94089 * 23 22 2 39 39 H 1.08998 * 109.52545 * 296.80819 * 23 22 2 40 40 H 1.08997 * 109.48201 * 62.33906 * 24 23 22 41 41 H 1.09006 * 109.47739 * 182.37811 * 24 23 22 42 42 H 1.09007 * 109.47936 * 58.82159 * 26 25 24 43 43 H 1.08993 * 109.48578 * 178.85600 * 26 25 24 44 44 H 1.09000 * 109.52104 * 177.51028 * 27 26 25 45 45 H 1.09000 * 109.52389 * 297.63674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1771 -2.5504 6 8 2.8776 -0.7635 -3.5085 7 8 1.3246 1.0592 -2.7922 8 6 3.7927 1.1910 -2.1373 9 6 3.5869 2.4674 -1.6360 10 6 4.6634 3.2739 -1.3012 11 6 5.9508 2.8187 -1.4742 12 6 6.1717 1.5275 -1.9873 13 6 7.4898 1.0490 -2.1688 14 1 7.6835 -0.0134 -2.1695 15 6 8.5437 1.9525 -2.3472 16 7 8.2937 3.1894 -2.6922 17 14 10.3075 1.3920 -2.0931 18 1 10.3206 -0.0424 -1.7091 19 1 11.0713 1.5744 -3.3534 20 1 10.9325 2.1986 -1.0143 21 6 5.0711 0.7154 -2.3184 22 6 2.0401 -0.7211 1.2493 23 6 1.5304 -0.0003 2.5010 24 6 1.9796 -0.7717 3.7448 25 8 1.4895 -2.1123 3.6749 26 6 1.9707 -2.8517 2.5507 27 6 1.5212 -2.1637 1.2591 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.1110 -1.6562 -1.1948 32 1 2.5801 2.8343 -1.5016 33 1 4.4914 4.2648 -0.9077 34 1 6.7882 3.4503 -1.2165 35 1 9.0242 3.8154 -2.8162 36 1 5.2292 -0.2776 -2.7126 37 1 3.1301 -0.7259 1.2497 38 1 0.4417 0.0479 2.4757 39 1 1.9391 1.0097 2.5316 40 1 3.0685 -0.7848 3.7908 41 1 1.5835 -0.2859 4.6366 42 1 3.0596 -2.8919 2.5812 43 1 1.5685 -3.8642 2.5823 44 1 1.9243 -2.7013 0.4008 45 1 0.4324 -2.1602 1.2081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:34 Heat of formation + Delta-G solvation = -140.378621 kcal Electronic energy + Delta-G solvation = -28154.547298 eV Core-core repulsion = 24262.010359 eV Total energy + Delta-G solvation = -3892.536940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64662 -39.45915 -38.33210 -37.70797 -36.89605 -35.67905 -33.68780 -31.97898 -31.92342 -31.59936 -30.19432 -27.36413 -26.31958 -24.52864 -23.67518 -23.13512 -22.76364 -20.64648 -20.33487 -19.61511 -18.59260 -17.73519 -17.54307 -16.91565 -16.88357 -16.63318 -16.54365 -16.09278 -15.65104 -15.60932 -15.21684 -15.08929 -14.58140 -14.40359 -14.32451 -14.07236 -13.72798 -13.29025 -13.25388 -13.13042 -13.08051 -13.05386 -12.97997 -12.87151 -12.74502 -12.59687 -12.24508 -12.20274 -12.00581 -11.86723 -11.55811 -11.46174 -11.36139 -11.15957 -11.00333 -10.61427 -10.28064 -9.85572 -9.56757 -8.74533 -6.46570 -0.49154 0.39800 0.82893 1.36581 1.43480 1.51720 2.12176 2.17437 2.53884 2.78915 3.03386 3.47060 3.50382 3.67992 3.75388 3.85599 4.14140 4.23103 4.29641 4.34532 4.37301 4.43268 4.45783 4.50966 4.70145 4.79031 4.83430 4.85498 4.89238 4.90080 5.00525 5.03211 5.04839 5.12644 5.19096 5.19583 5.29053 5.38199 5.40953 5.55407 5.58556 5.87648 5.92731 6.09070 6.13264 6.31881 6.51604 6.78737 6.83563 8.23881 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011486 B = 0.003720 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.153273 B = 7524.766079 C = 8698.760138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.152 3.848 3 H 0.081 0.919 4 N -1.099 6.099 5 S 2.716 3.284 6 O -1.000 7.000 7 O -0.983 6.983 8 C -0.637 4.637 9 C -0.147 4.147 10 C -0.121 4.121 11 C -0.139 4.139 12 C 0.063 3.937 13 C -0.498 4.498 14 H 0.079 0.921 15 C 0.037 3.963 16 N -0.824 5.824 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.145 4.145 22 C -0.093 4.093 23 C -0.150 4.150 24 C 0.058 3.942 25 O -0.401 6.401 26 C 0.058 3.942 27 C -0.153 4.153 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.424 0.576 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.292 0.708 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 -6.584 11.796 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.046 3.954 3 H 0.099 0.901 4 N -0.862 5.862 5 S 2.808 3.192 6 O -0.990 6.990 7 O -0.973 6.973 8 C -0.726 4.726 9 C -0.168 4.168 10 C -0.140 4.140 11 C -0.159 4.159 12 C 0.060 3.940 13 C -0.527 4.527 14 H 0.097 0.903 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.166 4.166 22 C -0.114 4.114 23 C -0.189 4.189 24 C -0.018 4.018 25 O -0.320 6.320 26 C -0.019 4.019 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.261 0.739 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.112 -6.295 11.032 16.876 hybrid contribution 1.931 0.125 -0.182 1.944 sum -9.180 -6.170 10.850 15.495 Atomic orbital electron populations 1.22438 0.93872 1.03655 1.03240 1.20910 0.95275 0.95800 0.83446 0.90051 1.55362 1.81676 1.19450 1.29666 1.00897 0.73057 0.72658 0.72557 1.93498 1.82736 1.63034 1.59771 1.93499 1.52483 1.67078 1.84243 1.30245 1.14650 1.10621 1.17071 1.20469 0.98824 0.92982 1.04493 1.21144 0.92729 0.99428 1.00739 1.21632 0.96316 0.97440 1.00536 1.18032 0.93411 0.92684 0.89862 1.19892 0.92148 0.95084 1.45604 0.90253 1.26763 1.05926 0.94254 0.90916 1.69828 1.36748 1.06086 1.32342 0.85132 0.75557 0.79852 0.79069 1.18111 1.19193 1.18511 1.20814 0.91534 1.00410 1.03885 1.21454 1.00461 0.95788 0.93651 1.22309 1.02993 0.99894 0.93671 1.22679 0.98344 0.82213 0.98601 1.87890 1.72072 1.25311 1.46706 1.22677 0.98454 0.95800 0.84961 1.22346 1.02885 0.95101 0.98737 0.90585 0.89441 0.92681 0.73884 0.84995 0.85503 0.86995 0.89754 0.87405 0.91281 0.89374 0.90019 0.93444 0.87423 0.93389 0.87563 0.90150 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 8.82 71.98 0.63 -2.68 16 2 C 0.15 3.40 2.61 44.99 0.12 3.52 16 3 H 0.08 1.99 7.24 -2.38 -0.02 1.97 16 4 N -1.10 -28.34 5.44 -169.39 -0.92 -29.26 16 5 S 2.72 97.45 5.65 -56.49 -0.32 97.14 16 6 O -1.00 -41.68 17.27 -128.00 -2.21 -43.89 16 7 O -0.98 -37.71 16.52 -128.00 -2.11 -39.82 16 8 C -0.64 -27.08 5.81 22.22 0.13 -26.95 16 9 C -0.15 -6.03 8.92 22.46 0.20 -5.83 16 10 C -0.12 -5.24 10.02 22.22 0.22 -5.02 16 11 C -0.14 -6.96 8.70 22.73 0.20 -6.76 16 12 C 0.06 3.33 5.57 -21.29 -0.12 3.21 16 13 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 14 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 15 C 0.04 1.79 5.14 85.26 0.44 2.23 16 16 N -0.82 -41.64 10.97 21.83 0.24 -41.40 16 17 Si 0.98 36.87 29.60 68.60 2.03 38.90 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 19 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 20 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 21 C -0.15 -7.06 9.26 22.73 0.21 -6.85 16 22 C -0.09 -1.78 2.30 -10.63 -0.02 -1.81 16 23 C -0.15 -2.44 5.15 30.69 0.16 -2.29 16 24 C 0.06 0.96 6.84 72.02 0.49 1.45 16 25 O -0.40 -7.83 10.77 -148.98 -1.60 -9.43 16 26 C 0.06 0.94 6.84 72.01 0.49 1.44 16 27 C -0.15 -2.46 4.90 30.73 0.15 -2.31 16 28 H 0.08 1.23 6.36 -2.39 -0.02 1.22 16 29 H 0.09 1.33 6.37 -2.39 -0.02 1.31 16 30 H 0.05 1.26 7.64 -2.39 -0.02 1.24 16 31 H 0.42 8.96 7.13 -96.74 -0.69 8.27 16 32 H 0.13 4.68 7.59 -2.91 -0.02 4.66 16 33 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.11 5.76 6.18 -2.91 -0.02 5.74 16 35 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 36 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.27 6.28 -2.39 -0.02 1.26 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.18 6.68 -2.39 -0.02 1.17 16 45 H 0.09 1.28 6.28 -2.39 -0.01 1.26 16 Total: -1.00 -66.25 365.92 -1.06 -67.31 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.32 Total: 35.07 kcal Atomic # 6 Polarization: -78.13 SS G_CDS: 3.51 Total: -74.61 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.68 Total: -70.66 kcal Atomic # 8 Polarization: -87.22 SS G_CDS: -5.93 Total: -93.14 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: 97.45 SS G_CDS: -0.32 Total: 97.14 kcal Total: -66.25 -1.06 -67.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.070 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds