Wall clock time and date at job start Tue Mar 31 2020 23:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 O 1.42896 * 109.46931 * 240.00316 * 2 1 3 5 5 C 1.52999 * 109.46835 * 120.00169 * 2 1 3 6 6 C 1.53002 * 109.46960 * 183.96533 * 5 2 1 7 7 H 1.09001 * 109.99812 * 53.66171 * 6 5 2 8 8 C 1.54339 * 109.99033 * 292.62804 * 6 5 2 9 9 C 1.55157 * 103.01649 * 218.66694 * 8 6 5 10 10 C 1.54905 * 101.58364 * 35.30668 * 9 8 6 11 11 N 1.47015 * 109.88454 * 174.76104 * 6 5 2 12 12 S 1.65604 * 125.64476 * 298.39714 * 11 6 5 13 13 O 1.42097 * 106.40335 * 16.95445 * 12 11 6 14 14 O 1.42101 * 106.40293 * 149.87997 * 12 11 6 15 15 C 1.76205 * 107.21591 * 263.41242 * 12 11 6 16 16 C 1.38648 * 119.87881 * 269.73152 * 15 12 11 17 17 C 1.38618 * 120.49976 * 179.72396 * 16 15 12 18 18 C 1.37634 * 120.24800 * 0.54431 * 17 16 15 19 19 C 1.40692 * 119.74603 * 359.73305 * 18 17 16 20 20 C 1.41395 * 120.24717 * 179.97438 * 19 18 17 21 21 H 1.07994 * 120.00554 * 164.13136 * 20 19 18 22 22 C 1.39949 * 119.99534 * 344.13523 * 20 19 18 23 23 N 1.30821 * 120.00243 * 331.08879 * 22 20 19 24 24 Si 1.86805 * 119.99771 * 151.08818 * 22 20 19 25 25 H 1.48504 * 109.46934 * 94.99872 * 24 22 20 26 26 H 1.48499 * 109.47212 * 214.99443 * 24 22 20 27 27 H 1.48493 * 109.47127 * 334.99947 * 24 22 20 28 28 C 1.37603 * 119.87366 * 90.00150 * 15 12 11 29 29 H 1.09000 * 109.47237 * 300.00248 * 1 2 3 30 30 H 1.09005 * 109.47327 * 59.99968 * 1 2 3 31 31 H 1.08996 * 109.47490 * 179.97438 * 1 2 3 32 32 H 0.96710 * 114.00150 * 299.99764 * 4 2 1 33 33 H 1.09003 * 109.47008 * 63.96996 * 5 2 1 34 34 H 1.08995 * 109.47194 * 303.96550 * 5 2 1 35 35 H 1.08999 * 110.85268 * 100.19682 * 8 6 5 36 36 H 1.09003 * 110.51342 * 336.97215 * 8 6 5 37 37 H 1.08999 * 111.00105 * 277.23015 * 9 8 6 38 38 H 1.09003 * 111.03478 * 153.39693 * 9 8 6 39 39 H 1.09008 * 110.36179 * 204.15448 * 10 9 8 40 40 H 1.08994 * 110.46082 * 81.88088 * 10 9 8 41 41 H 1.07998 * 119.74892 * 359.97331 * 16 15 12 42 42 H 1.08006 * 119.87267 * 180.27359 * 17 16 15 43 43 H 1.08002 * 120.12737 * 179.74702 * 18 17 16 44 44 H 0.96999 * 119.99653 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.12855 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7213 1.2492 6 6 3.5667 -0.6355 1.3001 7 1 3.8844 0.4042 1.2221 8 6 4.1801 -1.4570 0.1465 9 6 5.4260 -2.1070 0.8042 10 6 4.9155 -2.3727 2.2424 11 7 4.0585 -1.2155 2.5583 12 16 3.7026 -0.6647 4.0790 13 8 2.5623 0.1726 3.9459 14 8 3.7388 -1.7983 4.9351 15 6 5.0309 0.3793 4.5796 16 6 6.1147 -0.1586 5.2566 17 6 7.1693 0.6498 5.6514 18 6 7.1456 1.9998 5.3845 19 6 6.0483 2.5576 4.7032 20 6 6.0128 3.9432 4.4239 21 1 5.3175 4.3292 3.6933 22 6 6.8788 4.8145 5.0943 23 7 7.2920 4.5256 6.3015 24 14 7.4449 6.3899 4.2653 25 1 6.5651 7.5117 4.6812 26 1 8.8445 6.6843 4.6649 27 1 7.3749 6.2262 2.7911 28 6 4.9859 1.7263 4.3021 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7210 -1.5952 -1.2330 33 1 1.7358 -1.7675 1.2143 34 1 1.6197 -0.2502 2.1378 35 1 4.4739 -0.8080 -0.6785 36 1 3.4803 -2.2209 -0.1926 37 1 6.2694 -1.4166 0.8103 38 1 5.6904 -3.0392 0.3050 39 1 5.7528 -2.4258 2.9383 40 1 4.3356 -3.2949 2.2766 41 1 6.1394 -1.2161 5.4744 42 1 8.0106 0.2194 6.1743 43 1 7.9665 2.6286 5.6965 44 1 7.8926 5.1294 6.7659 45 1 4.1389 2.1439 3.7782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:45 Heat of formation + Delta-G solvation = -136.641968 kcal Electronic energy + Delta-G solvation = -28347.960294 eV Core-core repulsion = 24455.585388 eV Total energy + Delta-G solvation = -3892.374906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.18377 -39.46268 -38.34808 -37.94166 -36.95440 -35.77785 -33.08341 -31.99332 -31.80284 -31.59466 -30.57672 -27.39650 -26.51751 -23.76669 -23.02276 -22.84024 -22.51631 -21.89950 -20.29360 -19.36745 -18.61332 -17.86200 -17.42868 -17.04438 -16.77072 -16.59823 -16.40580 -16.15419 -15.37978 -15.21005 -15.06975 -14.76391 -14.55154 -14.37188 -14.25030 -13.75081 -13.65808 -13.34139 -13.30389 -13.15869 -13.10025 -13.07715 -12.94338 -12.91801 -12.69034 -12.57153 -12.49445 -12.21225 -11.94063 -11.68197 -11.65454 -11.50821 -11.48372 -11.32102 -11.06580 -10.81302 -9.98998 -9.84213 -9.68127 -8.87355 -6.45534 -0.58787 0.38120 0.81865 1.34182 1.41918 1.52671 2.05317 2.14086 2.47151 2.71305 3.23760 3.46252 3.55680 3.67871 3.81742 3.88312 4.13624 4.22355 4.25869 4.33474 4.41092 4.45413 4.50845 4.63199 4.68314 4.79124 4.86359 4.90309 4.94418 4.99360 5.06305 5.09603 5.12578 5.15794 5.25503 5.28356 5.29077 5.36619 5.39348 5.50900 5.54217 5.61045 5.85868 5.88240 6.06185 6.46903 6.72615 6.81316 6.98160 8.11349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.003875 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.949584 B = 7224.096145 C = 8230.851671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.115 3.885 3 H 0.085 0.915 4 O -0.564 6.564 5 C -0.183 4.183 6 C 0.147 3.853 7 H 0.055 0.945 8 C -0.097 4.097 9 C -0.128 4.128 10 C 0.109 3.891 11 N -1.005 6.005 12 S 2.724 3.276 13 O -0.983 6.983 14 O -0.987 6.987 15 C -0.634 4.634 16 C -0.167 4.167 17 C -0.116 4.116 18 C -0.161 4.161 19 C 0.064 3.936 20 C -0.496 4.496 21 H 0.081 0.919 22 C 0.045 3.955 23 N -0.803 5.803 24 Si 0.980 3.020 25 H -0.260 1.260 26 H -0.260 1.260 27 H -0.257 1.257 28 C -0.155 4.155 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.387 0.613 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.296 0.704 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -10.826 -13.534 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.055 3.945 3 H 0.103 0.897 4 O -0.372 6.372 5 C -0.222 4.222 6 C 0.042 3.958 7 H 0.073 0.927 8 C -0.136 4.136 9 C -0.167 4.167 10 C -0.015 4.015 11 N -0.844 5.844 12 S 2.820 3.180 13 O -0.974 6.974 14 O -0.978 6.978 15 C -0.723 4.723 16 C -0.188 4.188 17 C -0.135 4.135 18 C -0.180 4.180 19 C 0.061 3.939 20 C -0.523 4.523 21 H 0.099 0.901 22 C -0.174 4.174 23 N -0.426 5.426 24 Si 0.800 3.200 25 H -0.184 1.184 26 H -0.184 1.184 27 H -0.181 1.181 28 C -0.176 4.176 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.967 -10.358 -12.829 17.220 hybrid contribution 0.660 0.952 0.671 1.339 sum -4.307 -9.405 -12.158 15.963 Atomic orbital electron populations 1.22446 0.95363 1.03380 1.02655 1.21626 0.93459 0.96046 0.83376 0.89659 1.86599 1.77068 1.30187 1.43336 1.23049 0.95322 1.03041 1.00825 1.21504 0.93665 0.97493 0.83156 0.92721 1.22644 0.96534 0.99240 0.95152 1.22866 0.97882 1.02575 0.93400 1.22291 0.93203 0.87626 0.98426 1.58509 1.63714 1.41672 1.20548 1.00610 0.73255 0.72425 0.71744 1.93450 1.48380 1.69445 1.86116 1.93477 1.87560 1.51280 1.65459 1.30362 1.18620 1.08596 1.14707 1.20361 0.94938 0.99110 1.04358 1.21107 0.98510 0.93864 0.99975 1.21610 0.98825 0.94473 1.03130 1.18010 0.90961 0.94054 0.90865 1.19875 1.19303 0.91988 1.21169 0.90053 1.26857 0.93447 1.03547 0.93580 1.69879 1.24240 1.38420 1.10079 0.85226 0.78716 0.76173 0.79905 1.18435 1.18413 1.18068 1.20691 0.98452 0.92254 1.06232 0.92303 0.91303 0.90884 0.76377 0.89340 0.90681 0.89509 0.88294 0.91712 0.87054 0.91317 0.89520 0.85637 0.85610 0.86750 0.89242 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.53 71.98 0.69 -2.34 16 2 C 0.11 2.26 3.59 30.59 0.11 2.37 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 O -0.56 -9.15 10.86 -148.98 -1.62 -10.77 16 5 C -0.18 -4.29 4.53 30.59 0.14 -4.15 16 6 C 0.15 3.80 3.04 45.35 0.14 3.94 16 7 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.10 -1.73 4.83 31.79 0.15 -1.58 16 9 C -0.13 -2.29 7.09 31.98 0.23 -2.06 16 10 C 0.11 2.53 7.05 86.85 0.61 3.14 16 11 N -1.01 -30.11 3.40 -484.27 -1.64 -31.76 16 12 S 2.72 106.91 5.86 -56.49 -0.33 106.58 16 13 O -0.98 -41.99 14.43 -128.00 -1.85 -43.83 16 14 O -0.99 -41.35 16.93 -128.00 -2.17 -43.52 16 15 C -0.63 -29.23 5.97 22.22 0.13 -29.10 16 16 C -0.17 -7.51 9.53 22.46 0.21 -7.29 16 17 C -0.12 -5.34 10.02 22.22 0.22 -5.12 16 18 C -0.16 -8.37 8.81 22.73 0.20 -8.17 16 19 C 0.06 3.51 5.64 -21.29 -0.12 3.39 16 20 C -0.50 -26.51 9.01 23.46 0.21 -26.30 16 21 H 0.08 4.21 7.99 -2.91 -0.02 4.19 16 22 C 0.04 2.18 4.96 85.26 0.42 2.60 16 23 N -0.80 -40.38 11.12 21.83 0.24 -40.14 16 24 Si 0.98 36.49 29.64 68.60 2.03 38.52 16 25 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 26 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 27 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 28 C -0.16 -7.94 9.26 22.73 0.21 -7.73 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.39 3.28 8.51 -74.05 -0.63 2.65 16 33 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 34 H 0.07 2.24 5.66 -2.39 -0.01 2.23 16 35 H 0.09 1.56 7.94 -2.39 -0.02 1.54 16 36 H 0.10 1.26 6.69 -2.39 -0.02 1.24 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 5.00 7.59 -2.91 -0.02 4.98 16 42 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.11 6.03 5.97 -2.91 -0.02 6.01 16 44 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 45 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -68.03 372.02 -1.40 -69.43 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.37 Total: 33.87 kcal Atomic # 6 Polarization: -81.95 SS G_CDS: 3.56 Total: -78.39 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.40 Total: -71.89 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -5.63 Total: -98.12 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Atomic # 16 Polarization: 106.91 SS G_CDS: -0.33 Total: 106.58 kcal Total: -68.03 -1.40 -69.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.209 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds