Wall clock time and date at job start Tue Mar 31 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46767 * 2 1 4 4 O 1.42900 * 109.46921 * 119.99443 * 2 1 3 5 5 C 1.52997 * 109.47365 * 239.99580 * 2 1 3 6 6 C 1.52998 * 109.47432 * 173.91581 * 5 2 1 7 7 H 1.09001 * 109.86724 * 53.17450 * 6 5 2 8 8 C 1.54327 * 110.00917 * 292.07860 * 6 5 2 9 9 C 1.55159 * 102.93724 * 218.31408 * 8 6 5 10 10 C 1.54902 * 101.58273 * 35.50508 * 9 8 6 11 11 N 1.47012 * 109.88223 * 174.19163 * 6 5 2 12 12 S 1.65611 * 125.65104 * 298.49243 * 11 6 5 13 13 O 1.42096 * 106.39724 * 17.33544 * 12 11 6 14 14 O 1.42096 * 106.40196 * 150.25384 * 12 11 6 15 15 C 1.76194 * 107.21587 * 263.79674 * 12 11 6 16 16 C 1.38663 * 119.87500 * 269.72390 * 15 12 11 17 17 C 1.38611 * 120.50014 * 179.72431 * 16 15 12 18 18 C 1.37641 * 120.24832 * 0.55353 * 17 16 15 19 19 C 1.40696 * 119.74642 * 359.72274 * 18 17 16 20 20 C 1.41390 * 120.24452 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99716 * 158.58502 * 20 19 18 22 22 C 1.39942 * 120.00356 * 338.58139 * 20 19 18 23 23 N 1.30826 * 120.00060 * 330.17183 * 22 20 19 24 24 Si 1.86803 * 120.00193 * 150.16108 * 22 20 19 25 25 H 1.48504 * 109.46636 * 84.99880 * 24 22 20 26 26 H 1.48493 * 109.47159 * 205.00338 * 24 22 20 27 27 H 1.48501 * 109.46987 * 325.00656 * 24 22 20 28 28 C 1.37592 * 119.87904 * 89.99970 * 15 12 11 29 29 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46992 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.47253 * 59.99996 * 1 2 3 32 32 H 0.96702 * 114.00157 * 64.65045 * 4 2 1 33 33 H 1.09006 * 109.46752 * 53.91205 * 5 2 1 34 34 H 1.08999 * 109.46777 * 293.92031 * 5 2 1 35 35 H 1.08995 * 110.71861 * 336.67771 * 8 6 5 36 36 H 1.09002 * 110.71594 * 99.77751 * 8 6 5 37 37 H 1.09003 * 111.00594 * 277.42676 * 9 8 6 38 38 H 1.08998 * 111.00099 * 153.58094 * 9 8 6 39 39 H 1.09003 * 110.36726 * 204.14836 * 10 9 8 40 40 H 1.09001 * 110.37110 * 81.82413 * 10 9 8 41 41 H 1.08000 * 119.74700 * 359.97438 * 16 15 12 42 42 H 1.08003 * 119.87589 * 180.27346 * 17 16 15 43 43 H 1.08004 * 120.12514 * 179.74811 * 18 17 16 44 44 H 0.96997 * 120.00052 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12499 * 359.97243 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7213 -1.2491 6 6 3.5624 -0.5903 -1.3280 7 1 4.0119 -0.9248 -0.3930 8 6 3.9526 0.8774 -1.6024 9 6 5.1539 0.7415 -2.5749 10 6 4.7408 -0.4973 -3.4082 11 7 4.0763 -1.3949 -2.4459 12 16 3.9329 -3.0377 -2.5987 13 8 2.9059 -3.4360 -1.7011 14 8 3.8950 -3.3092 -3.9930 15 6 5.4265 -3.7500 -1.9935 16 6 6.4858 -3.9735 -2.8600 17 6 7.6687 -4.5279 -2.3966 18 6 7.7999 -4.8734 -1.0708 19 6 6.7296 -4.6566 -0.1836 20 6 6.8528 -5.0081 1.1803 21 1 6.2096 -4.5489 1.9165 22 6 7.8080 -5.9509 1.5765 23 7 8.1658 -6.9044 0.7552 24 14 8.5723 -5.8481 3.2779 25 1 7.6939 -6.5367 4.2575 26 1 9.9051 -6.5027 3.2622 27 1 8.7252 -4.4230 3.6665 28 6 5.5354 -4.0877 -0.6641 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7808 -1.6134 1.1981 33 1 1.5904 -0.2743 -2.1358 34 1 1.7683 -1.7756 -1.1963 35 1 3.1304 1.4126 -2.0774 36 1 4.2535 1.3752 -0.6805 37 1 6.0790 0.5547 -2.0295 38 1 5.2465 1.6245 -3.2071 39 1 5.6214 -0.9803 -3.8319 40 1 4.0480 -0.2089 -4.1987 41 1 6.3898 -3.7099 -3.9029 42 1 8.4889 -4.6935 -3.0795 43 1 8.7211 -5.3090 -0.7127 44 1 8.8282 -7.5577 1.0297 45 1 4.7077 -3.9165 0.0082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:50 Heat of formation + Delta-G solvation = -118.683556 kcal Electronic energy + Delta-G solvation = -28421.284359 eV Core-core repulsion = 24529.688188 eV Total energy + Delta-G solvation = -3891.596171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.14469 -37.61864 -37.13328 -36.66812 -35.32032 -33.89119 -32.18467 -30.84371 -30.11735 -29.82655 -29.62445 -25.62975 -25.47474 -22.32400 -21.87137 -21.70614 -20.99446 -20.64869 -18.66467 -17.82822 -17.20675 -16.59976 -15.89356 -15.82836 -15.62240 -15.14702 -14.91232 -14.65263 -14.16412 -13.77716 -13.66890 -13.52117 -13.37545 -13.14328 -12.89301 -12.63002 -12.39235 -12.05507 -11.95061 -11.87368 -11.57618 -11.49515 -11.45351 -11.34328 -11.32821 -11.14421 -11.11785 -10.87940 -10.87408 -10.69715 -10.63469 -10.40320 -10.05109 -9.83473 -9.61838 -9.22752 -8.70539 -8.05491 -7.76290 -7.04751 -4.50514 0.94540 2.19849 2.64329 2.97986 2.98920 3.10450 3.48576 3.80428 4.21471 4.31071 4.41126 4.47490 4.59790 4.77912 4.93208 5.02031 5.04581 5.16943 5.33993 5.37937 5.44616 5.45227 5.59841 5.66255 5.75197 5.81035 5.85271 5.86781 6.01522 6.03098 6.13664 6.17754 6.20433 6.36958 6.44174 6.58393 6.64912 6.72566 6.90699 7.00855 7.21469 7.39957 7.71304 7.72763 7.77778 7.92654 8.37318 8.63489 8.71502 9.92478 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004090 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.440922 B = 6844.911399 C = 7982.331600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.096 0.904 4 O -0.564 6.564 5 C -0.188 4.188 6 C 0.157 3.843 7 H 0.085 0.915 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.123 3.877 11 N -1.010 6.010 12 S 2.701 3.299 13 O -0.966 6.966 14 O -0.972 6.972 15 C -0.626 4.626 16 C -0.160 4.160 17 C -0.113 4.113 18 C -0.133 4.133 19 C 0.096 3.904 20 C -0.465 4.465 21 H 0.085 0.915 22 C 0.084 3.916 23 N -0.774 5.774 24 Si 0.902 3.098 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.257 1.257 28 C -0.128 4.128 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.381 0.619 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.286 0.714 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 13.633 -2.916 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.048 3.952 3 H 0.114 0.886 4 O -0.371 6.371 5 C -0.227 4.227 6 C 0.051 3.949 7 H 0.103 0.897 8 C -0.163 4.163 9 C -0.170 4.170 10 C -0.003 4.003 11 N -0.846 5.846 12 S 2.800 3.200 13 O -0.957 6.957 14 O -0.963 6.963 15 C -0.718 4.718 16 C -0.181 4.181 17 C -0.133 4.133 18 C -0.153 4.153 19 C 0.092 3.908 20 C -0.493 4.493 21 H 0.103 0.897 22 C -0.137 4.137 23 N -0.397 5.397 24 Si 0.725 3.275 25 H -0.191 1.191 26 H -0.200 1.200 27 H -0.181 1.181 28 C -0.149 4.149 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.015 13.468 -3.187 15.517 hybrid contribution 0.946 -0.802 0.762 1.455 sum -6.069 12.666 -2.426 14.253 Atomic orbital electron populations 1.22499 0.96736 1.02758 1.02266 1.21791 0.92543 0.96484 0.84363 0.88590 1.86529 1.80609 1.27374 1.42544 1.23133 0.96087 1.04468 0.99039 1.21235 0.92925 0.91007 0.89711 0.89683 1.22707 0.98216 0.95236 1.00097 1.22784 0.98733 0.97460 0.98000 1.21917 0.96620 0.90453 0.91264 1.58769 1.71129 1.23416 1.31280 1.01326 0.74753 0.70732 0.73184 1.93458 1.55448 1.80500 1.66301 1.93505 1.87606 1.83115 1.32084 1.29800 1.19292 1.18761 1.03939 1.20005 0.93993 1.07221 0.96874 1.20743 0.96483 1.00157 0.95901 1.21402 0.98924 1.02104 0.92821 1.17616 0.90012 0.89834 0.93291 1.19555 1.16468 1.20163 0.93103 0.89653 1.25959 0.95036 0.93031 0.99677 1.69881 1.23794 1.08138 1.37869 0.86421 0.78876 0.80162 0.82001 1.19083 1.19971 1.18119 1.20673 0.97543 1.04654 0.92021 0.92086 0.91970 0.91855 0.77084 0.90865 0.88181 0.90854 0.90176 0.90321 0.90301 0.90638 0.91622 0.87825 0.88480 0.86810 0.90334 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.56 37.16 0.36 -1.34 16 2 C 0.11 1.16 3.52 -26.73 -0.09 1.06 16 3 H 0.10 0.92 7.34 -51.93 -0.38 0.54 16 4 O -0.56 -7.16 12.84 -35.23 -0.45 -7.61 16 5 C -0.19 -2.31 4.35 -26.73 -0.12 -2.42 16 6 C 0.16 2.08 3.00 -66.96 -0.20 1.88 16 7 H 0.09 1.26 7.71 -51.93 -0.40 0.86 16 8 C -0.12 -1.24 5.56 -24.89 -0.14 -1.38 16 9 C -0.13 -1.32 7.08 -24.59 -0.17 -1.49 16 10 C 0.12 1.54 7.05 -2.53 -0.02 1.52 16 11 N -1.01 -15.38 3.40 -104.43 -0.35 -15.73 16 12 S 2.70 52.11 5.86 -107.50 -0.63 51.48 16 13 O -0.97 -19.71 14.41 -57.17 -0.82 -20.54 16 14 O -0.97 -20.53 16.93 -57.17 -0.97 -21.49 16 15 C -0.63 -13.97 5.97 -39.66 -0.24 -14.21 16 16 C -0.16 -3.55 9.53 -39.29 -0.37 -3.93 16 17 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 18 C -0.13 -3.32 8.77 -38.87 -0.34 -3.66 16 19 C 0.10 2.49 5.58 -106.83 -0.60 1.89 16 20 C -0.47 -11.90 8.98 -37.75 -0.34 -12.24 16 21 H 0.09 2.10 8.00 -52.49 -0.42 1.68 16 22 C 0.08 2.03 4.86 -17.34 -0.08 1.95 16 23 N -0.77 -19.22 11.56 55.55 0.64 -18.58 16 24 Si 0.90 17.77 29.65 -169.99 -5.04 12.73 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 27 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 28 C -0.13 -3.09 9.26 -38.87 -0.36 -3.45 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.38 4.22 9.03 45.56 0.41 4.63 16 33 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 34 H 0.10 1.45 5.62 -51.93 -0.29 1.16 16 35 H 0.07 0.62 7.76 -51.93 -0.40 0.21 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.09 7.59 -52.49 -0.40 1.70 16 42 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.11 2.86 6.40 -52.48 -0.34 2.53 16 44 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 45 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.61 375.62 -11.06 -41.66 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.97 Total: 11.21 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: -3.12 Total: -38.79 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.29 Total: -34.31 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -2.24 Total: -49.64 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.04 Total: 12.73 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.63 Total: 51.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.61 -11.06 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.019 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds