Wall clock time and date at job start Tue Mar 31 2020 23:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46767 * 2 1 4 4 O 1.42900 * 109.46921 * 119.99443 * 2 1 3 5 5 C 1.52997 * 109.47365 * 239.99580 * 2 1 3 6 6 C 1.52998 * 109.47432 * 173.91581 * 5 2 1 7 7 H 1.09001 * 109.86724 * 53.17450 * 6 5 2 8 8 C 1.54327 * 110.00917 * 292.07860 * 6 5 2 9 9 C 1.55159 * 102.93724 * 218.31408 * 8 6 5 10 10 C 1.54902 * 101.58273 * 35.50508 * 9 8 6 11 11 N 1.47012 * 109.88223 * 174.19163 * 6 5 2 12 12 S 1.65611 * 125.65104 * 298.49243 * 11 6 5 13 13 O 1.42096 * 106.39724 * 17.33544 * 12 11 6 14 14 O 1.42096 * 106.40196 * 150.25384 * 12 11 6 15 15 C 1.76194 * 107.21587 * 263.79674 * 12 11 6 16 16 C 1.38663 * 119.87500 * 269.72390 * 15 12 11 17 17 C 1.38611 * 120.50014 * 179.72431 * 16 15 12 18 18 C 1.37641 * 120.24832 * 0.55353 * 17 16 15 19 19 C 1.40696 * 119.74642 * 359.72274 * 18 17 16 20 20 C 1.41390 * 120.24452 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99716 * 158.58502 * 20 19 18 22 22 C 1.39942 * 120.00356 * 338.58139 * 20 19 18 23 23 N 1.30826 * 120.00060 * 330.17183 * 22 20 19 24 24 Si 1.86803 * 120.00193 * 150.16108 * 22 20 19 25 25 H 1.48504 * 109.46636 * 84.99880 * 24 22 20 26 26 H 1.48493 * 109.47159 * 205.00338 * 24 22 20 27 27 H 1.48501 * 109.46987 * 325.00656 * 24 22 20 28 28 C 1.37592 * 119.87904 * 89.99970 * 15 12 11 29 29 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46992 * 300.00167 * 1 2 3 31 31 H 1.09000 * 109.47253 * 59.99996 * 1 2 3 32 32 H 0.96702 * 114.00157 * 64.65045 * 4 2 1 33 33 H 1.09006 * 109.46752 * 53.91205 * 5 2 1 34 34 H 1.08999 * 109.46777 * 293.92031 * 5 2 1 35 35 H 1.08995 * 110.71861 * 336.67771 * 8 6 5 36 36 H 1.09002 * 110.71594 * 99.77751 * 8 6 5 37 37 H 1.09003 * 111.00594 * 277.42676 * 9 8 6 38 38 H 1.08998 * 111.00099 * 153.58094 * 9 8 6 39 39 H 1.09003 * 110.36726 * 204.14836 * 10 9 8 40 40 H 1.09001 * 110.37110 * 81.82413 * 10 9 8 41 41 H 1.08000 * 119.74700 * 359.97438 * 16 15 12 42 42 H 1.08003 * 119.87589 * 180.27346 * 17 16 15 43 43 H 1.08004 * 120.12514 * 179.74811 * 18 17 16 44 44 H 0.96997 * 120.00052 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12499 * 359.97243 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7213 -1.2491 6 6 3.5624 -0.5903 -1.3280 7 1 4.0119 -0.9248 -0.3930 8 6 3.9526 0.8774 -1.6024 9 6 5.1539 0.7415 -2.5749 10 6 4.7408 -0.4973 -3.4082 11 7 4.0763 -1.3949 -2.4459 12 16 3.9329 -3.0377 -2.5987 13 8 2.9059 -3.4360 -1.7011 14 8 3.8950 -3.3092 -3.9930 15 6 5.4265 -3.7500 -1.9935 16 6 6.4858 -3.9735 -2.8600 17 6 7.6687 -4.5279 -2.3966 18 6 7.7999 -4.8734 -1.0708 19 6 6.7296 -4.6566 -0.1836 20 6 6.8528 -5.0081 1.1803 21 1 6.2096 -4.5489 1.9165 22 6 7.8080 -5.9509 1.5765 23 7 8.1658 -6.9044 0.7552 24 14 8.5723 -5.8481 3.2779 25 1 7.6939 -6.5367 4.2575 26 1 9.9051 -6.5027 3.2622 27 1 8.7252 -4.4230 3.6665 28 6 5.5354 -4.0877 -0.6641 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7808 -1.6134 1.1981 33 1 1.5904 -0.2743 -2.1358 34 1 1.7683 -1.7756 -1.1963 35 1 3.1304 1.4126 -2.0774 36 1 4.2535 1.3752 -0.6805 37 1 6.0790 0.5547 -2.0295 38 1 5.2465 1.6245 -3.2071 39 1 5.6214 -0.9803 -3.8319 40 1 4.0480 -0.2089 -4.1987 41 1 6.3898 -3.7099 -3.9029 42 1 8.4889 -4.6935 -3.0795 43 1 8.7211 -5.3090 -0.7127 44 1 8.8282 -7.5577 1.0297 45 1 4.7077 -3.9165 0.0082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:49 Heat of formation + Delta-G solvation = -139.419726 kcal Electronic energy + Delta-G solvation = -28422.183546 eV Core-core repulsion = 24529.688188 eV Total energy + Delta-G solvation = -3892.495359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12910 -39.45675 -38.36084 -37.99557 -36.94666 -35.73574 -33.13358 -31.98438 -31.86994 -31.63313 -30.50618 -27.36742 -26.52210 -23.78904 -23.09368 -22.86333 -22.69926 -21.62331 -20.28232 -19.34243 -18.57655 -17.88506 -17.47963 -17.00601 -16.78825 -16.61733 -16.55070 -16.09735 -15.38542 -15.14375 -15.07623 -14.83289 -14.57210 -14.36509 -14.15443 -13.80150 -13.75367 -13.37864 -13.34575 -13.18945 -13.12066 -13.05364 -12.95733 -12.81755 -12.72891 -12.57146 -12.39657 -12.21940 -12.03590 -11.72669 -11.64730 -11.52762 -11.47083 -11.30523 -11.05261 -10.95609 -9.98386 -9.83424 -9.64922 -8.86861 -6.44248 -0.58447 0.37540 0.82847 1.34804 1.42094 1.52563 2.05447 2.15190 2.48057 2.72071 3.23888 3.44398 3.52345 3.62473 3.83540 3.94759 4.08987 4.21273 4.25283 4.33618 4.40733 4.47394 4.50536 4.59914 4.68707 4.77146 4.84136 4.89568 4.93269 4.96783 5.01838 5.05307 5.08391 5.15289 5.16527 5.26232 5.31665 5.36867 5.43477 5.47491 5.53784 5.59105 5.84135 5.87551 6.06715 6.47220 6.73773 6.81864 6.82852 8.13736 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004090 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.440922 B = 6844.911399 C = 7982.331600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 H 0.114 0.886 4 O -0.583 6.583 5 C -0.186 4.186 6 C 0.147 3.853 7 H 0.060 0.940 8 C -0.115 4.115 9 C -0.123 4.123 10 C 0.107 3.893 11 N -1.005 6.005 12 S 2.725 3.275 13 O -0.982 6.982 14 O -0.988 6.988 15 C -0.636 4.636 16 C -0.165 4.165 17 C -0.115 4.115 18 C -0.156 4.156 19 C 0.069 3.931 20 C -0.502 4.502 21 H 0.082 0.918 22 C 0.048 3.952 23 N -0.805 5.805 24 Si 0.977 3.023 25 H -0.259 1.259 26 H -0.262 1.262 27 H -0.257 1.257 28 C -0.149 4.149 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.383 0.617 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.296 0.704 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 15.984 -3.386 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.049 3.951 3 H 0.132 0.868 4 O -0.391 6.391 5 C -0.225 4.225 6 C 0.042 3.958 7 H 0.079 0.921 8 C -0.154 4.154 9 C -0.162 4.162 10 C -0.017 4.017 11 N -0.844 5.844 12 S 2.821 3.179 13 O -0.972 6.972 14 O -0.979 6.979 15 C -0.724 4.724 16 C -0.186 4.186 17 C -0.134 4.134 18 C -0.176 4.176 19 C 0.065 3.935 20 C -0.529 4.529 21 H 0.100 0.900 22 C -0.171 4.171 23 N -0.429 5.429 24 Si 0.797 3.203 25 H -0.183 1.183 26 H -0.186 1.186 27 H -0.181 1.181 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.232 0.768 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.180 15.789 -3.662 17.727 hybrid contribution 0.935 -1.474 0.799 1.920 sum -6.245 14.315 -2.863 15.878 Atomic orbital electron populations 1.22464 0.95426 1.02613 1.03392 1.21947 0.93583 0.96733 0.82886 0.86846 1.86502 1.81129 1.27771 1.43651 1.23103 0.95420 1.03216 1.00747 1.21479 0.93486 0.92860 0.88022 0.92149 1.22741 0.99062 0.92700 1.00912 1.22797 0.98088 0.97424 0.97922 1.22311 0.96881 0.90843 0.91650 1.58502 1.71268 1.22013 1.32651 1.00585 0.73379 0.71658 0.72324 1.93441 1.55418 1.81739 1.66632 1.93477 1.87439 1.84245 1.32691 1.30388 1.20960 1.17874 1.03193 1.20371 0.93748 1.06488 0.97952 1.21087 0.97684 0.99073 0.95530 1.21425 0.98602 1.03663 0.93923 1.17983 0.90918 0.90553 0.94027 1.19811 1.18272 1.21568 0.93294 0.90009 1.26799 0.94633 0.91901 1.03793 1.69894 1.24304 1.08711 1.39976 0.85301 0.78300 0.80074 0.76661 1.18341 1.18586 1.18119 1.20739 0.97279 1.05872 0.93139 0.92911 0.91449 0.90094 0.76814 0.88924 0.90912 0.88171 0.89132 0.91461 0.86883 0.91194 0.89494 0.85567 0.85533 0.87701 0.89317 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.56 71.98 0.69 -2.30 16 2 C 0.11 2.14 3.52 30.59 0.11 2.25 16 3 H 0.11 1.85 7.34 -2.39 -0.02 1.83 16 4 O -0.58 -14.78 12.84 -148.98 -1.91 -16.70 16 5 C -0.19 -4.31 4.35 30.59 0.13 -4.18 16 6 C 0.15 3.73 3.00 45.34 0.14 3.87 16 7 H 0.06 1.82 7.71 -2.39 -0.02 1.80 16 8 C -0.12 -1.94 5.56 31.78 0.18 -1.77 16 9 C -0.12 -2.10 7.08 31.98 0.23 -1.87 16 10 C 0.11 2.45 7.05 86.85 0.61 3.06 16 11 N -1.01 -29.67 3.40 -484.29 -1.65 -31.32 16 12 S 2.73 105.62 5.86 -56.49 -0.33 105.29 16 13 O -0.98 -41.07 14.41 -128.00 -1.84 -42.91 16 14 O -0.99 -41.09 16.93 -128.00 -2.17 -43.26 16 15 C -0.64 -29.01 5.97 22.22 0.13 -28.88 16 16 C -0.16 -7.34 9.53 22.46 0.21 -7.13 16 17 C -0.11 -5.26 10.02 22.22 0.22 -5.03 16 18 C -0.16 -8.09 8.77 22.73 0.20 -7.89 16 19 C 0.07 3.72 5.58 -21.29 -0.12 3.60 16 20 C -0.50 -26.86 8.98 23.46 0.21 -26.64 16 21 H 0.08 4.24 8.00 -2.91 -0.02 4.22 16 22 C 0.05 2.35 4.86 85.26 0.41 2.76 16 23 N -0.81 -40.95 11.56 21.83 0.25 -40.69 16 24 Si 0.98 36.80 29.65 68.60 2.03 38.83 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 27 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 28 C -0.15 -7.58 9.26 22.73 0.21 -7.37 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.38 8.93 9.03 -74.06 -0.67 8.26 16 33 H 0.09 1.76 8.01 -2.38 -0.02 1.74 16 34 H 0.07 2.12 5.62 -2.39 -0.01 2.10 16 35 H 0.10 1.20 7.76 -2.39 -0.02 1.18 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.13 4.97 7.59 -2.91 -0.02 4.95 16 42 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.10 5.49 6.40 -2.91 -0.02 5.47 16 44 H 0.30 13.37 8.30 -92.71 -0.77 12.60 16 45 H 0.11 5.33 7.60 -2.91 -0.02 5.31 16 Total: -1.00 -68.24 375.62 -1.72 -69.96 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.33 Total: 38.34 kcal Atomic # 6 Polarization: -81.11 SS G_CDS: 3.57 Total: -77.54 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.39 Total: -72.01 kcal Atomic # 8 Polarization: -96.94 SS G_CDS: -5.92 Total: -102.87 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 105.62 SS G_CDS: -0.33 Total: 105.29 kcal Total: -68.24 -1.72 -69.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.463 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds