Wall clock time and date at job start Tue Mar 31 2020 23:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47138 * 2 1 4 4 O 1.42897 * 109.46958 * 120.00260 * 2 1 3 5 5 C 1.53002 * 109.46918 * 240.00171 * 2 1 3 6 6 C 1.53005 * 109.46822 * 174.38557 * 5 2 1 7 7 H 1.09003 * 109.99676 * 306.80381 * 6 5 2 8 8 C 1.54314 * 109.77697 * 67.96132 * 6 5 2 9 9 C 1.55157 * 102.86277 * 141.88591 * 8 6 5 10 10 C 1.54914 * 101.58006 * 324.30505 * 9 8 6 11 11 N 1.47022 * 109.87994 * 185.71448 * 6 5 2 12 12 S 1.65605 * 125.65118 * 61.67888 * 11 6 5 13 13 O 1.42096 * 106.39713 * 17.43295 * 12 11 6 14 14 O 1.42097 * 106.40300 * 150.35313 * 12 11 6 15 15 C 1.76203 * 107.21507 * 263.89515 * 12 11 6 16 16 C 1.38653 * 119.87526 * 275.11590 * 15 12 11 17 17 C 1.38616 * 120.49838 * 179.72364 * 16 15 12 18 18 C 1.37634 * 120.25000 * 0.54921 * 17 16 15 19 19 C 1.40705 * 119.74345 * 359.72784 * 18 17 16 20 20 C 1.41394 * 120.24272 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99959 * 207.38875 * 20 19 18 22 22 C 1.39952 * 119.99952 * 27.38544 * 20 19 18 23 23 N 1.30822 * 119.99756 * 11.52654 * 22 20 19 24 24 Si 1.86794 * 119.99692 * 191.52341 * 22 20 19 25 25 H 1.48500 * 109.46934 * 90.00385 * 24 22 20 26 26 H 1.48502 * 109.47053 * 210.00010 * 24 22 20 27 27 H 1.48495 * 109.47584 * 330.00151 * 24 22 20 28 28 C 1.37598 * 119.87101 * 95.38886 * 15 12 11 29 29 H 1.09000 * 109.46797 * 184.77021 * 1 2 3 30 30 H 1.08992 * 109.47312 * 304.77445 * 1 2 3 31 31 H 1.09002 * 109.47155 * 64.77687 * 1 2 3 32 32 H 0.96697 * 114.00454 * 60.00286 * 4 2 1 33 33 H 1.09000 * 109.47350 * 54.38615 * 5 2 1 34 34 H 1.09003 * 109.47312 * 294.37732 * 5 2 1 35 35 H 1.08997 * 110.92436 * 23.47498 * 8 6 5 36 36 H 1.08996 * 110.74348 * 260.21457 * 8 6 5 37 37 H 1.09000 * 111.00696 * 206.23035 * 9 8 6 38 38 H 1.09001 * 111.00366 * 82.37464 * 9 8 6 39 39 H 1.08996 * 110.36617 * 278.16710 * 10 9 8 40 40 H 1.09007 * 110.45525 * 155.89257 * 10 9 8 41 41 H 1.07997 * 119.74968 * 0.02562 * 16 15 12 42 42 H 1.07998 * 119.87072 * 180.25655 * 17 16 15 43 43 H 1.07997 * 120.13155 * 179.70685 * 18 17 16 44 44 H 0.97003 * 119.99551 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.13360 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5635 -0.6001 -1.3218 7 1 3.8581 0.4468 -1.2496 8 6 4.2067 -1.4093 -0.1761 9 6 5.4653 -2.0191 -0.8481 10 6 4.9475 -2.3000 -2.2809 11 7 4.0507 -1.1705 -2.5863 12 16 3.6622 -0.6292 -4.1024 13 8 3.1386 0.6815 -3.9385 14 8 4.7785 -0.9222 -4.9314 15 6 2.3326 -1.6266 -4.6874 16 6 2.5984 -2.8414 -5.3006 17 6 1.5621 -3.6389 -5.7605 18 6 0.2562 -3.2266 -5.6227 19 6 -0.0251 -1.9930 -5.0072 20 6 -1.3628 -1.5594 -4.8596 21 1 -1.5865 -0.5037 -4.8159 22 6 -2.3969 -2.4982 -4.7705 23 7 -2.1176 -3.7644 -4.5965 24 14 -4.1758 -1.9431 -4.8997 25 1 -4.6028 -1.9769 -6.3216 26 1 -5.0373 -2.8528 -4.1024 27 1 -4.3016 -0.5586 -4.3778 28 6 1.0348 -1.1942 -4.5389 29 1 -0.3633 -1.0241 0.0855 30 1 -0.3633 0.5861 0.8441 31 1 -0.3633 0.4379 -0.9297 32 1 1.7210 -1.5952 1.2328 33 1 1.5969 -0.2687 -2.1364 34 1 1.7612 -1.7739 -1.2004 35 1 3.5354 -2.1952 0.1701 36 1 4.4888 -0.7543 0.6481 37 1 5.7641 -2.9428 -0.3525 38 1 6.2863 -1.3023 -0.8629 39 1 4.3964 -3.2400 -2.3076 40 1 5.7773 -2.3273 -2.9873 41 1 3.6203 -3.1710 -5.4165 42 1 1.7805 -4.5852 -6.2329 43 1 -0.5495 -3.8474 -5.9859 44 1 -2.8344 -4.4150 -4.5343 45 1 0.8302 -0.2455 -4.0654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:54 Heat of formation + Delta-G solvation = -117.720349 kcal Electronic energy + Delta-G solvation = -28930.015696 eV Core-core repulsion = 25038.461293 eV Total energy + Delta-G solvation = -3891.554403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.14969 -37.68234 -37.03398 -36.68116 -35.31649 -33.85832 -32.13344 -30.73533 -30.10473 -29.81473 -29.57708 -25.52998 -25.47926 -22.17887 -21.78649 -21.60745 -20.98720 -20.84151 -18.57087 -17.99883 -17.04547 -16.54461 -15.96671 -15.73301 -15.45237 -15.30612 -14.83617 -14.72478 -14.01554 -13.68323 -13.57653 -13.46814 -13.41935 -13.17500 -12.65213 -12.55300 -12.24314 -11.95265 -11.93544 -11.71574 -11.63400 -11.57574 -11.41612 -11.38294 -11.35022 -11.02260 -11.00927 -10.93929 -10.71685 -10.64180 -10.63245 -10.45339 -9.92138 -9.76855 -9.60798 -9.43262 -8.70702 -8.05074 -7.70555 -6.91002 -4.58888 0.94686 2.16581 2.59183 2.97593 3.01074 3.03465 3.49174 3.80571 4.25514 4.37662 4.42901 4.55371 4.66551 4.82021 5.02195 5.09926 5.17537 5.31986 5.36093 5.43648 5.50701 5.58950 5.71482 5.84430 5.86443 5.95186 5.97846 6.04114 6.04720 6.10532 6.21886 6.25640 6.31779 6.32977 6.50985 6.58350 6.65351 6.74096 6.89381 7.03001 7.18553 7.33881 7.67634 7.68912 7.78560 7.91227 8.37578 8.64807 8.68635 10.03345 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004943 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.607670 B = 5663.642347 C = 7173.799615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.110 3.890 3 H 0.099 0.901 4 O -0.564 6.564 5 C -0.178 4.178 6 C 0.160 3.840 7 H 0.075 0.925 8 C -0.109 4.109 9 C -0.133 4.133 10 C 0.116 3.884 11 N -1.010 6.010 12 S 2.700 3.300 13 O -0.968 6.968 14 O -0.973 6.973 15 C -0.634 4.634 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.091 3.909 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.802 5.802 24 Si 0.913 3.087 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.120 4.120 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.372 0.628 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.282 0.718 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 0.527 9.300 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.051 3.949 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.217 4.217 6 C 0.054 3.946 7 H 0.093 0.907 8 C -0.148 4.148 9 C -0.172 4.172 10 C -0.009 4.009 11 N -0.847 5.847 12 S 2.798 3.202 13 O -0.958 6.958 14 O -0.964 6.964 15 C -0.726 4.726 16 C -0.163 4.163 17 C -0.143 4.143 18 C -0.132 4.132 19 C 0.088 3.912 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.143 4.143 23 N -0.428 5.428 24 Si 0.737 3.263 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.142 4.142 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.219 0.781 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.093 0.907 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.382 1.627 8.925 11.696 hybrid contribution -1.825 -1.105 -0.344 2.161 sum 5.557 0.522 8.581 10.236 Atomic orbital electron populations 1.22484 0.96089 1.02811 1.02910 1.21790 0.93048 0.96410 0.83686 0.88315 1.86555 1.77050 1.29015 1.44339 1.22941 0.95795 1.02723 1.00259 1.21237 0.93026 0.97490 0.82837 0.90661 1.22648 0.96068 0.99531 0.96526 1.22818 0.98117 1.01326 0.94962 1.21995 0.92764 0.89048 0.97110 1.58767 1.59806 1.44985 1.21099 1.01347 0.74029 0.73652 0.71162 1.93508 1.80890 1.35934 1.85505 1.93503 1.51694 1.85833 1.65369 1.29831 1.13430 1.11899 1.17469 1.20070 0.97737 0.94107 1.04387 1.20829 0.93683 0.98393 1.01366 1.21730 0.95009 0.98257 0.98183 1.17695 0.92716 0.91599 0.89234 1.19600 0.90522 0.94616 1.44212 0.90068 1.25899 1.01877 0.94449 0.92105 1.69742 1.35297 1.02449 1.35338 0.86225 0.80905 0.79837 0.79328 1.19212 1.20210 1.18477 1.20791 0.90637 1.00286 1.02437 0.92116 0.92216 0.90950 0.78090 0.89606 0.90357 0.90606 0.89944 0.90303 0.90943 0.91541 0.90296 0.87878 0.88383 0.85409 0.90698 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 9.53 37.16 0.35 -1.92 16 2 C 0.11 1.34 3.57 -26.73 -0.10 1.24 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 O -0.56 -6.14 10.93 -35.23 -0.39 -6.52 16 5 C -0.18 -2.54 4.56 -26.73 -0.12 -2.67 16 6 C 0.16 2.19 2.83 -66.96 -0.19 2.01 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.11 -1.16 4.84 -24.90 -0.12 -1.28 16 9 C -0.13 -1.34 7.08 -24.58 -0.17 -1.51 16 10 C 0.12 1.50 7.14 -2.53 -0.02 1.48 16 11 N -1.01 -15.80 3.40 -104.42 -0.35 -16.15 16 12 S 2.70 52.71 5.44 -107.50 -0.58 52.13 16 13 O -0.97 -20.50 16.03 -57.17 -0.92 -21.42 16 14 O -0.97 -20.62 16.83 -57.17 -0.96 -21.58 16 15 C -0.63 -13.82 5.96 -39.66 -0.24 -14.05 16 16 C -0.14 -3.07 9.53 -39.29 -0.37 -3.44 16 17 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 18 C -0.11 -2.74 8.67 -38.87 -0.34 -3.08 16 19 C 0.09 2.29 5.56 -106.82 -0.59 1.70 16 20 C -0.46 -11.48 9.07 -37.74 -0.34 -11.82 16 21 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 22 C 0.07 1.74 5.25 -17.34 -0.09 1.64 16 23 N -0.80 -19.39 10.79 55.55 0.60 -18.79 16 24 Si 0.91 17.81 29.57 -169.99 -5.03 12.78 16 25 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 28 C -0.12 -2.81 8.53 -38.87 -0.33 -3.14 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.37 3.09 8.63 45.56 0.39 3.49 16 33 H 0.09 1.45 5.41 -51.93 -0.28 1.17 16 34 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 35 H 0.08 0.75 6.82 -51.93 -0.35 0.40 16 36 H 0.08 0.82 7.96 -51.93 -0.41 0.41 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.01 7.81 -51.93 -0.41 0.60 16 41 H 0.10 2.02 7.72 -52.49 -0.41 1.61 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.13 3.19 6.14 -52.49 -0.32 2.87 16 44 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 45 H 0.11 2.51 6.57 -52.49 -0.34 2.17 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -29.54 370.89 -11.01 -40.55 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.90 Total: 11.41 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: -3.07 Total: -37.98 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.24 Total: -34.95 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.26 Total: -49.53 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.58 Total: 52.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.54 -11.01 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.170 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds