Wall clock time and date at job start Tue Mar 31 2020 23:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47138 * 2 1 4 4 O 1.42897 * 109.46958 * 120.00260 * 2 1 3 5 5 C 1.53002 * 109.46918 * 240.00171 * 2 1 3 6 6 C 1.53005 * 109.46822 * 174.38557 * 5 2 1 7 7 H 1.09003 * 109.99676 * 306.80381 * 6 5 2 8 8 C 1.54314 * 109.77697 * 67.96132 * 6 5 2 9 9 C 1.55157 * 102.86277 * 141.88591 * 8 6 5 10 10 C 1.54914 * 101.58006 * 324.30505 * 9 8 6 11 11 N 1.47022 * 109.87994 * 185.71448 * 6 5 2 12 12 S 1.65605 * 125.65118 * 61.67888 * 11 6 5 13 13 O 1.42096 * 106.39713 * 17.43295 * 12 11 6 14 14 O 1.42097 * 106.40300 * 150.35313 * 12 11 6 15 15 C 1.76203 * 107.21507 * 263.89515 * 12 11 6 16 16 C 1.38653 * 119.87526 * 275.11590 * 15 12 11 17 17 C 1.38616 * 120.49838 * 179.72364 * 16 15 12 18 18 C 1.37634 * 120.25000 * 0.54921 * 17 16 15 19 19 C 1.40705 * 119.74345 * 359.72784 * 18 17 16 20 20 C 1.41394 * 120.24272 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99959 * 207.38875 * 20 19 18 22 22 C 1.39952 * 119.99952 * 27.38544 * 20 19 18 23 23 N 1.30822 * 119.99756 * 11.52654 * 22 20 19 24 24 Si 1.86794 * 119.99692 * 191.52341 * 22 20 19 25 25 H 1.48500 * 109.46934 * 90.00385 * 24 22 20 26 26 H 1.48502 * 109.47053 * 210.00010 * 24 22 20 27 27 H 1.48495 * 109.47584 * 330.00151 * 24 22 20 28 28 C 1.37598 * 119.87101 * 95.38886 * 15 12 11 29 29 H 1.09000 * 109.46797 * 184.77021 * 1 2 3 30 30 H 1.08992 * 109.47312 * 304.77445 * 1 2 3 31 31 H 1.09002 * 109.47155 * 64.77687 * 1 2 3 32 32 H 0.96697 * 114.00454 * 60.00286 * 4 2 1 33 33 H 1.09000 * 109.47350 * 54.38615 * 5 2 1 34 34 H 1.09003 * 109.47312 * 294.37732 * 5 2 1 35 35 H 1.08997 * 110.92436 * 23.47498 * 8 6 5 36 36 H 1.08996 * 110.74348 * 260.21457 * 8 6 5 37 37 H 1.09000 * 111.00696 * 206.23035 * 9 8 6 38 38 H 1.09001 * 111.00366 * 82.37464 * 9 8 6 39 39 H 1.08996 * 110.36617 * 278.16710 * 10 9 8 40 40 H 1.09007 * 110.45525 * 155.89257 * 10 9 8 41 41 H 1.07997 * 119.74968 * 0.02562 * 16 15 12 42 42 H 1.07998 * 119.87072 * 180.25655 * 17 16 15 43 43 H 1.07997 * 120.13155 * 179.70685 * 18 17 16 44 44 H 0.97003 * 119.99551 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.13360 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2493 6 6 3.5635 -0.6001 -1.3218 7 1 3.8581 0.4468 -1.2496 8 6 4.2067 -1.4093 -0.1761 9 6 5.4653 -2.0191 -0.8481 10 6 4.9475 -2.3000 -2.2809 11 7 4.0507 -1.1705 -2.5863 12 16 3.6622 -0.6292 -4.1024 13 8 3.1386 0.6815 -3.9385 14 8 4.7785 -0.9222 -4.9314 15 6 2.3326 -1.6266 -4.6874 16 6 2.5984 -2.8414 -5.3006 17 6 1.5621 -3.6389 -5.7605 18 6 0.2562 -3.2266 -5.6227 19 6 -0.0251 -1.9930 -5.0072 20 6 -1.3628 -1.5594 -4.8596 21 1 -1.5865 -0.5037 -4.8159 22 6 -2.3969 -2.4982 -4.7705 23 7 -2.1176 -3.7644 -4.5965 24 14 -4.1758 -1.9431 -4.8997 25 1 -4.6028 -1.9769 -6.3216 26 1 -5.0373 -2.8528 -4.1024 27 1 -4.3016 -0.5586 -4.3778 28 6 1.0348 -1.1942 -4.5389 29 1 -0.3633 -1.0241 0.0855 30 1 -0.3633 0.5861 0.8441 31 1 -0.3633 0.4379 -0.9297 32 1 1.7210 -1.5952 1.2328 33 1 1.5969 -0.2687 -2.1364 34 1 1.7612 -1.7739 -1.2004 35 1 3.5354 -2.1952 0.1701 36 1 4.4888 -0.7543 0.6481 37 1 5.7641 -2.9428 -0.3525 38 1 6.2863 -1.3023 -0.8629 39 1 4.3964 -3.2400 -2.3076 40 1 5.7773 -2.3273 -2.9873 41 1 3.6203 -3.1710 -5.4165 42 1 1.7805 -4.5852 -6.2329 43 1 -0.5495 -3.8474 -5.9859 44 1 -2.8344 -4.4150 -4.5343 45 1 0.8302 -0.2455 -4.0654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:53 Heat of formation + Delta-G solvation = -137.108610 kcal Electronic energy + Delta-G solvation = -28930.856434 eV Core-core repulsion = 25038.461293 eV Total energy + Delta-G solvation = -3892.395141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.19513 -39.47587 -38.37498 -37.95532 -36.97093 -35.66446 -33.13432 -31.92803 -31.81816 -31.58124 -30.59152 -27.36097 -26.53071 -23.74905 -23.05173 -22.92204 -22.46463 -21.88765 -20.17456 -19.50085 -18.50941 -17.83344 -17.46805 -17.05661 -16.85383 -16.54463 -16.44808 -16.17121 -15.30959 -15.11134 -15.08739 -14.77947 -14.55707 -14.36084 -14.25415 -13.75910 -13.59418 -13.38012 -13.28580 -13.13691 -13.11054 -13.04305 -12.99607 -12.81227 -12.72269 -12.66905 -12.57656 -12.23427 -11.95233 -11.70270 -11.59676 -11.50472 -11.49471 -11.36197 -11.19654 -10.84736 -9.99116 -9.80339 -9.54540 -8.69526 -6.48092 -0.60038 0.37957 0.81615 1.36510 1.44025 1.48706 2.04518 2.16614 2.56810 2.73341 3.22491 3.45841 3.50030 3.67441 3.78096 3.86991 4.12465 4.21970 4.25379 4.31714 4.37978 4.43324 4.49296 4.59867 4.67961 4.80652 4.87684 4.88512 4.93578 4.99793 5.05442 5.09592 5.13449 5.17483 5.19208 5.24394 5.28188 5.35693 5.39213 5.50997 5.53064 5.60628 5.86074 5.93523 6.08287 6.51503 6.79617 6.83201 6.88995 8.26902 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010937 B = 0.004943 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.607670 B = 5663.642347 C = 7173.799615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 H 0.101 0.899 4 O -0.560 6.560 5 C -0.177 4.177 6 C 0.151 3.849 7 H 0.074 0.926 8 C -0.100 4.100 9 C -0.122 4.122 10 C 0.102 3.898 11 N -1.007 6.007 12 S 2.721 3.279 13 O -0.989 6.989 14 O -0.989 6.989 15 C -0.641 4.641 16 C -0.144 4.144 17 C -0.124 4.124 18 C -0.134 4.134 19 C 0.064 3.936 20 C -0.493 4.493 21 H 0.076 0.924 22 C 0.039 3.961 23 N -0.827 5.827 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.265 1.265 27 H -0.260 1.260 28 C -0.132 4.132 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.385 0.615 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.290 0.710 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.716 -0.139 11.055 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.062 3.938 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.216 4.216 6 C 0.046 3.954 7 H 0.092 0.908 8 C -0.139 4.139 9 C -0.161 4.161 10 C -0.022 4.022 11 N -0.846 5.846 12 S 2.817 3.183 13 O -0.979 6.979 14 O -0.979 6.979 15 C -0.730 4.730 16 C -0.165 4.165 17 C -0.143 4.143 18 C -0.154 4.154 19 C 0.061 3.939 20 C -0.523 4.523 21 H 0.094 0.906 22 C -0.176 4.176 23 N -0.453 5.453 24 Si 0.801 3.199 25 H -0.188 1.188 26 H -0.190 1.190 27 H -0.184 1.184 28 C -0.153 4.153 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.234 0.766 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.101 0.899 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.284 0.932 10.663 13.535 hybrid contribution -1.987 -0.930 -0.838 2.349 sum 6.297 0.001 9.825 11.669 Atomic orbital electron populations 1.22471 0.96428 1.02774 1.02497 1.21590 0.92642 0.96389 0.83184 0.88075 1.86535 1.76906 1.30095 1.43187 1.22916 0.96391 1.02236 1.00070 1.21510 0.92706 0.98132 0.83044 0.90796 1.22643 0.96272 0.99564 0.95418 1.22836 0.97762 1.02851 0.92635 1.22348 0.92410 0.88184 0.99289 1.58529 1.59900 1.45971 1.20202 1.00604 0.72969 0.72867 0.71844 1.93473 1.81159 1.37164 1.86147 1.93475 1.51598 1.85959 1.66870 1.30275 1.13773 1.12211 1.16784 1.20421 0.98771 0.93843 1.03466 1.21139 0.92890 0.99508 1.00749 1.21722 0.95835 0.98353 0.99516 1.18029 0.93498 0.92479 0.89924 1.19799 0.91462 0.94826 1.46206 0.90626 1.26653 1.05556 0.94279 0.91107 1.69782 1.36865 1.03339 1.35315 0.85211 0.75762 0.79436 0.79448 1.18776 1.18972 1.18405 1.20799 0.91270 1.00253 1.02978 0.92307 0.90731 0.92891 0.76594 0.92804 0.90974 0.89611 0.88504 0.87452 0.90136 0.91070 0.90159 0.85514 0.85546 0.86539 0.89895 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.50 9.53 71.98 0.69 -3.82 16 2 C 0.12 2.86 3.57 30.60 0.11 2.97 16 3 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 4 O -0.56 -10.86 10.93 -148.98 -1.63 -12.48 16 5 C -0.18 -5.05 4.56 30.60 0.14 -4.91 16 6 C 0.15 3.96 2.83 45.34 0.13 4.08 16 7 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.10 -1.82 4.84 31.78 0.15 -1.66 16 9 C -0.12 -2.01 7.08 31.99 0.23 -1.78 16 10 C 0.10 2.40 7.14 86.86 0.62 3.03 16 11 N -1.01 -30.46 3.40 -484.27 -1.65 -32.10 16 12 S 2.72 106.34 5.44 -56.49 -0.31 106.03 16 13 O -0.99 -42.75 16.03 -128.00 -2.05 -44.80 16 14 O -0.99 -41.23 16.83 -128.00 -2.15 -43.38 16 15 C -0.64 -28.34 5.96 22.22 0.13 -28.21 16 16 C -0.14 -6.18 9.53 22.46 0.21 -5.97 16 17 C -0.12 -5.48 10.02 22.22 0.22 -5.26 16 18 C -0.13 -6.77 8.67 22.73 0.20 -6.57 16 19 C 0.06 3.35 5.56 -21.29 -0.12 3.24 16 20 C -0.49 -25.71 9.07 23.46 0.21 -25.50 16 21 H 0.08 3.86 7.87 -2.91 -0.02 3.84 16 22 C 0.04 1.86 5.25 85.26 0.45 2.31 16 23 N -0.83 -40.72 10.79 21.83 0.24 -40.49 16 24 Si 0.98 36.79 29.57 68.60 2.03 38.82 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 26 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 27 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 28 C -0.13 -6.44 8.53 22.73 0.19 -6.25 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.38 5.41 8.63 -74.06 -0.64 4.77 16 33 H 0.05 1.90 5.41 -2.39 -0.01 1.88 16 34 H 0.07 2.09 8.00 -2.39 -0.02 2.08 16 35 H 0.09 1.41 6.82 -2.39 -0.02 1.39 16 36 H 0.10 1.56 7.96 -2.39 -0.02 1.54 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.88 7.81 -2.38 -0.02 1.86 16 41 H 0.13 4.76 7.72 -2.91 -0.02 4.74 16 42 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.12 6.04 6.14 -2.91 -0.02 6.02 16 44 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 45 H 0.11 5.18 6.57 -2.91 -0.02 5.16 16 Total: -1.00 -64.80 370.89 -1.59 -66.39 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.37 Total: 36.32 kcal Atomic # 6 Polarization: -77.87 SS G_CDS: 3.57 Total: -74.31 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.41 Total: -72.59 kcal Atomic # 8 Polarization: -94.83 SS G_CDS: -5.83 Total: -100.66 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 106.34 SS G_CDS: -0.31 Total: 106.03 kcal Total: -64.80 -1.59 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.716 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds