Wall clock time and date at job start Tue Mar 31 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47045 * 2 1 4 4 H 1.08995 * 109.47117 * 305.80671 * 3 2 1 5 5 N 1.46506 * 109.47015 * 65.80675 * 3 2 1 6 6 S 1.65595 * 119.99975 * 236.79611 * 5 3 2 7 7 O 1.42092 * 106.40100 * 179.10318 * 6 5 3 8 8 O 1.42097 * 106.40265 * 312.02653 * 6 5 3 9 9 C 1.76205 * 107.21708 * 65.56308 * 6 5 3 10 10 C 1.38662 * 119.87269 * 89.39924 * 9 6 5 11 11 C 1.38610 * 120.49902 * 179.97438 * 10 9 6 12 12 C 1.37644 * 120.24971 * 0.02572 * 11 10 9 13 13 C 1.40699 * 119.74316 * 359.97106 * 12 11 10 14 14 C 1.41394 * 120.24219 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99779 * 151.30631 * 14 13 12 16 16 C 1.39945 * 120.00067 * 331.31274 * 14 13 12 17 17 N 1.30823 * 120.00197 * 342.12408 * 16 14 13 18 18 Si 1.86803 * 119.99730 * 162.12781 * 16 14 13 19 19 H 1.48499 * 109.47204 * 89.99917 * 18 16 14 20 20 H 1.48509 * 109.46589 * 209.99767 * 18 16 14 21 21 H 1.48501 * 109.47286 * 329.99365 * 18 16 14 22 22 C 1.37591 * 119.87561 * 269.12119 * 9 6 5 23 23 C 1.52995 * 109.46933 * 185.80617 * 3 2 1 24 24 H 1.09000 * 110.33582 * 302.25047 * 23 3 2 25 25 C 1.54485 * 110.37098 * 179.97438 * 23 3 2 26 26 C 1.54514 * 104.06434 * 217.19138 * 25 23 3 27 27 C 1.54481 * 104.06124 * 359.97438 * 26 25 23 28 28 O 1.44426 * 104.80365 * 23.97859 * 27 26 25 29 29 H 1.08997 * 109.46812 * 181.31917 * 1 2 3 30 30 H 1.08996 * 109.46994 * 301.31613 * 1 2 3 31 31 H 1.09000 * 109.47133 * 61.31502 * 1 2 3 32 32 H 1.09002 * 109.46870 * 239.99983 * 2 1 3 33 33 H 1.08999 * 109.47195 * 119.99669 * 2 1 3 34 34 H 0.96997 * 119.99460 * 56.79858 * 5 3 2 35 35 H 1.07994 * 119.74786 * 359.97438 * 10 9 6 36 36 H 1.08001 * 119.87572 * 179.97438 * 11 10 9 37 37 H 1.08001 * 120.12724 * 180.02562 * 12 11 10 38 38 H 0.96999 * 120.00056 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.13061 * 0.02562 * 22 9 6 40 40 H 1.09003 * 110.50959 * 335.83651 * 25 23 3 41 41 H 1.08999 * 110.50993 * 98.41124 * 25 23 3 42 42 H 1.08990 * 110.51168 * 118.64373 * 26 25 23 43 43 H 1.08995 * 110.50820 * 241.35906 * 26 25 23 44 44 H 1.08995 * 110.37128 * 142.81156 * 27 26 25 45 45 H 1.09001 * 110.37226 * 265.03744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9855 -0.8334 5 7 1.6691 2.0916 1.2600 6 16 0.7755 3.4856 1.2415 7 8 0.5672 3.8467 2.5999 8 8 1.3936 4.3460 0.2945 9 6 -0.8091 3.0807 0.5857 10 6 -1.8241 2.6698 1.4363 11 6 -3.0756 2.3486 0.9344 12 6 -3.3237 2.4341 -0.4168 13 6 -2.3013 2.8499 -1.2893 14 6 -2.5447 2.9420 -2.6790 15 1 -1.9952 3.6535 -3.2775 16 6 -3.4978 2.1113 -3.2790 17 7 -3.9074 1.0332 -2.6615 18 14 -4.1850 2.5418 -4.9619 19 1 -3.3429 1.9191 -6.0146 20 1 -5.5753 2.0318 -5.0740 21 1 -4.1835 4.0167 -5.1347 22 6 -1.0362 3.1789 -0.7678 23 6 3.5630 1.4450 -0.1459 24 1 4.0216 0.8714 0.6595 25 6 4.1006 2.8933 -0.1490 26 6 5.2584 2.8618 -1.1717 27 6 5.2838 1.3981 -1.6651 28 8 3.9465 0.9061 -1.4295 29 1 -0.3633 -1.0274 0.0237 30 1 -0.3633 0.5341 0.8779 31 1 -0.3633 0.4933 -0.9015 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.9470 1.7048 2.1049 35 1 -1.6382 2.5995 2.4978 36 1 -3.8588 2.0293 1.6061 37 1 -4.2997 2.1837 -0.8056 38 1 -4.5677 0.4572 -3.0775 39 1 -0.2453 3.5031 -1.4281 40 1 3.3249 3.5879 -0.4715 41 1 4.4691 3.1660 0.8399 42 1 5.0552 3.5408 -1.9997 43 1 6.2014 3.1181 -0.6890 44 1 5.5203 1.3601 -2.7284 45 1 6.0093 0.8180 -1.0947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:31 Heat of formation + Delta-G solvation = -135.539067 kcal Electronic energy + Delta-G solvation = -28905.587531 eV Core-core repulsion = 25013.260450 eV Total energy + Delta-G solvation = -3892.327081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60345 -39.45811 -38.28139 -37.44303 -36.91100 -35.60633 -33.15186 -32.40730 -31.87288 -31.58274 -30.38591 -27.29412 -26.41759 -23.65404 -23.32852 -22.82029 -22.06100 -21.82663 -20.72883 -19.66525 -18.54678 -17.78105 -17.50614 -17.04584 -16.98079 -16.63276 -16.44024 -16.24711 -15.59284 -15.24485 -15.10389 -15.04666 -14.55825 -14.37294 -14.29380 -13.74636 -13.50793 -13.32686 -13.26311 -13.17882 -13.04280 -13.00504 -12.92880 -12.73429 -12.61501 -12.54308 -12.23187 -12.12943 -12.02262 -11.97925 -11.70318 -11.53004 -11.41744 -11.25861 -11.09931 -10.71819 -10.40108 -9.79601 -9.46564 -8.70140 -6.40921 -0.50531 0.43849 0.89025 1.37692 1.43760 1.51329 2.05258 2.19067 2.58441 2.75783 3.02856 3.50036 3.51138 3.55878 3.76606 4.01112 4.11464 4.19792 4.21907 4.31422 4.38205 4.42119 4.46423 4.53251 4.71244 4.75206 4.85688 4.86614 4.90902 4.97737 4.99905 5.03990 5.09893 5.16032 5.19636 5.23595 5.35439 5.40415 5.44565 5.58531 5.59702 5.91030 5.95138 5.97189 6.12967 6.17538 6.55927 6.84058 6.88969 8.29165 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.004475 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.970815 B = 6255.900938 C = 7385.859251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.162 3.838 4 H 0.073 0.927 5 N -1.090 6.090 6 S 2.713 3.287 7 O -0.988 6.988 8 O -0.985 6.985 9 C -0.633 4.633 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.073 3.927 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.044 3.956 17 N -0.821 5.821 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.130 4.130 23 C 0.073 3.927 24 H 0.099 0.901 25 C -0.173 4.173 26 C -0.152 4.152 27 C 0.041 3.959 28 O -0.391 6.391 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.431 0.569 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.290 0.710 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 -3.469 4.599 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.054 3.946 4 H 0.091 0.909 5 N -0.853 5.853 6 S 2.806 3.194 7 O -0.978 6.978 8 O -0.974 6.974 9 C -0.722 4.722 10 C -0.160 4.160 11 C -0.140 4.140 12 C -0.153 4.153 13 C 0.070 3.930 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.172 4.172 17 N -0.447 5.447 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.186 1.186 22 C -0.151 4.151 23 C 0.014 3.986 24 H 0.117 0.883 25 C -0.211 4.211 26 C -0.190 4.190 27 C -0.035 4.035 28 O -0.310 6.310 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.268 0.732 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.648 -2.914 4.546 14.678 hybrid contribution -1.134 -0.271 -0.806 1.417 sum 12.515 -3.185 3.740 13.444 Atomic orbital electron populations 1.21798 0.96177 1.01301 1.01707 1.21790 0.95170 0.94748 1.03801 1.20688 0.94014 0.95187 0.84683 0.90889 1.55108 1.69549 1.46193 1.14418 1.00957 0.73320 0.72897 0.72226 1.93503 1.86770 1.82119 1.35424 1.93500 1.75466 1.64043 1.64438 1.30124 1.21374 1.17759 1.02958 1.20379 0.93431 1.04235 0.97975 1.21072 0.97154 1.00655 0.95140 1.21465 0.98593 1.02466 0.92732 1.17902 0.90896 0.90227 0.93956 1.19760 1.20531 1.19320 0.93677 0.90767 1.26581 0.94423 0.92799 1.03412 1.69811 1.24874 1.09439 1.40528 0.85328 0.78283 0.79762 0.77165 1.18810 1.18909 1.18590 1.20759 0.96814 1.04857 0.92696 1.23313 0.93925 0.94032 0.87379 0.88315 1.23238 0.99356 0.97347 1.01177 1.22942 0.99304 0.97696 0.99076 1.23608 0.84124 0.93224 1.02586 1.89099 1.32302 1.72697 1.36853 0.92713 0.92410 0.95106 0.90482 0.88921 0.73182 0.85281 0.85851 0.87884 0.89968 0.87773 0.90914 0.89275 0.91388 0.88431 0.88323 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.32 71.98 0.67 -4.39 16 2 C -0.12 -3.03 5.57 30.60 0.17 -2.86 16 3 C 0.16 4.47 1.95 44.99 0.09 4.56 16 4 H 0.07 2.48 7.66 -2.39 -0.02 2.47 16 5 N -1.09 -28.52 4.48 -169.38 -0.76 -29.28 16 6 S 2.71 95.45 5.60 -56.49 -0.32 95.13 16 7 O -0.99 -37.24 17.28 -128.00 -2.21 -39.45 16 8 O -0.98 -38.91 14.77 -128.00 -1.89 -40.80 16 9 C -0.63 -26.37 4.53 22.22 0.10 -26.26 16 10 C -0.14 -5.69 8.73 22.46 0.20 -5.50 16 11 C -0.12 -5.22 10.02 22.22 0.22 -5.00 16 12 C -0.13 -6.58 8.67 22.73 0.20 -6.38 16 13 C 0.07 3.80 5.52 -21.29 -0.12 3.68 16 14 C -0.50 -26.50 9.03 23.46 0.21 -26.29 16 15 H 0.07 3.85 7.91 -2.91 -0.02 3.82 16 16 C 0.04 2.13 5.10 85.26 0.43 2.57 16 17 N -0.82 -41.06 11.26 21.83 0.25 -40.81 16 18 Si 0.97 37.58 29.60 68.60 2.03 39.61 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 C -0.13 -6.18 8.65 22.73 0.20 -5.98 16 23 C 0.07 1.70 2.99 31.10 0.09 1.79 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 C -0.17 -4.12 6.28 31.61 0.20 -3.92 16 26 C -0.15 -2.90 7.09 31.61 0.22 -2.68 16 27 C 0.04 0.76 7.63 72.49 0.55 1.31 16 28 O -0.39 -10.05 10.82 -148.98 -1.61 -11.66 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.92 5.92 -2.39 -0.01 1.91 16 31 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 32 H 0.08 2.06 7.71 -2.39 -0.02 2.04 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.43 8.19 8.96 -96.75 -0.87 7.32 16 35 H 0.13 4.61 7.61 -2.91 -0.02 4.59 16 36 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 37 H 0.10 5.30 6.49 -2.91 -0.02 5.28 16 38 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 39 H 0.10 4.93 7.58 -2.91 -0.02 4.91 16 40 H 0.07 2.21 5.68 -2.39 -0.01 2.20 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.14 370.79 -0.94 -65.08 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.14 Total: 37.54 kcal Atomic # 6 Polarization: -78.79 SS G_CDS: 3.44 Total: -75.35 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -0.51 Total: -70.09 kcal Atomic # 8 Polarization: -86.20 SS G_CDS: -5.71 Total: -91.92 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 95.45 SS G_CDS: -0.32 Total: 95.13 kcal Total: -64.14 -0.94 -65.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.459 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds