Wall clock time and date at job start Tue Mar 31 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 H 1.08996 * 109.47186 * 303.48145 * 3 2 1 5 5 N 1.46504 * 109.47321 * 183.48122 * 3 2 1 6 6 S 1.65597 * 119.99981 * 94.73606 * 5 3 2 7 7 O 1.42106 * 106.40259 * 311.92457 * 6 5 3 8 8 O 1.42093 * 106.40203 * 179.00160 * 6 5 3 9 9 C 1.76205 * 107.21854 * 65.46199 * 6 5 3 10 10 C 1.38648 * 119.87706 * 89.99857 * 9 6 5 11 11 C 1.38611 * 120.50719 * 180.02562 * 10 9 6 12 12 C 1.37642 * 120.24027 * 0.02562 * 11 10 9 13 13 C 1.40690 * 119.74885 * 359.97438 * 12 11 10 14 14 C 1.41398 * 120.24485 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00144 * 148.42384 * 14 13 12 16 16 C 1.39945 * 120.00288 * 328.42604 * 14 13 12 17 17 N 1.30827 * 119.99624 * 348.42431 * 16 14 13 18 18 Si 1.86796 * 120.00265 * 168.42746 * 16 14 13 19 19 H 1.48500 * 109.47463 * 59.99671 * 18 16 14 20 20 H 1.48496 * 109.47472 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47185 * 299.99729 * 18 16 14 22 22 C 1.37598 * 119.87454 * 270.02150 * 9 6 5 23 23 C 1.53004 * 109.46975 * 63.48180 * 3 2 1 24 24 H 1.09003 * 109.82127 * 300.69939 * 23 3 2 25 25 C 1.54389 * 109.82933 * 179.81461 * 23 3 2 26 26 C 1.55448 * 102.18400 * 219.18215 * 25 23 3 27 27 C 1.54951 * 100.98993 * 34.04024 * 26 25 23 28 28 O 1.43238 * 109.82930 * 61.58778 * 23 3 2 29 29 H 1.09000 * 109.47104 * 53.76918 * 1 2 3 30 30 H 1.08999 * 109.47044 * 173.76700 * 1 2 3 31 31 H 1.08998 * 109.46929 * 293.76784 * 1 2 3 32 32 H 1.09005 * 109.47394 * 240.00107 * 2 1 3 33 33 H 1.09003 * 109.47554 * 120.00309 * 2 1 3 34 34 H 0.96997 * 119.99653 * 274.73345 * 5 3 2 35 35 H 1.08002 * 119.74841 * 359.74478 * 10 9 6 36 36 H 1.07993 * 119.88494 * 180.02562 * 11 10 9 37 37 H 1.08011 * 120.12283 * 179.97438 * 12 11 10 38 38 H 0.97003 * 119.99717 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.13065 * 359.95621 * 22 9 6 40 40 H 1.08997 * 110.84687 * 337.32190 * 25 23 3 41 41 H 1.09001 * 110.84493 * 100.93946 * 25 23 3 42 42 H 1.09004 * 111.05783 * 276.12311 * 26 25 23 43 43 H 1.08996 * 111.14796 * 151.99211 * 26 25 23 44 44 H 1.08997 * 110.30652 * 204.68946 * 27 26 25 45 45 H 1.08998 * 110.30873 * 82.52110 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6266 1.9740 -0.8571 5 7 3.5026 1.4434 -0.0839 6 16 4.2475 1.5912 -1.5555 7 8 3.6092 0.6644 -2.4232 8 8 5.6453 1.5813 -1.3004 9 6 3.8660 3.1963 -2.1743 10 6 4.6958 4.2664 -1.8768 11 6 4.4078 5.5347 -2.3564 12 6 3.2918 5.7448 -3.1342 13 6 2.4426 4.6663 -3.4425 14 6 1.2931 4.8703 -4.2403 15 1 0.9382 4.0821 -4.8876 16 6 0.6154 6.0937 -4.1911 17 7 0.8994 6.9616 -3.2542 18 14 -0.6947 6.4875 -5.4630 19 1 -1.7777 5.4742 -5.3883 20 1 -1.2575 7.8350 -5.1933 21 1 -0.0901 6.4667 -6.8192 22 6 2.7453 3.3829 -2.9506 23 6 1.6028 2.1380 1.2908 24 1 0.5153 2.1296 1.3651 25 6 2.1173 3.5936 1.3015 26 6 2.5357 3.7827 2.7867 27 6 3.0426 2.3602 3.1341 28 8 2.1723 1.4673 2.4210 29 1 -0.3633 0.6074 -0.8290 30 1 -0.3633 -1.0216 -0.1116 31 1 -0.3633 0.4142 0.9405 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.0347 1.3574 0.7226 35 1 5.5708 4.1116 -1.2630 36 1 5.0612 6.3610 -2.1188 37 1 3.0690 6.7339 -3.5065 38 1 0.4298 7.8098 -3.2204 39 1 2.1004 2.5479 -3.1815 40 1 2.9758 3.7065 0.6395 41 1 1.3223 4.2880 1.0296 42 1 1.6793 4.0560 3.4031 43 1 3.3349 4.5180 2.8795 44 1 2.9687 2.1840 4.2072 45 1 4.0720 2.2331 2.7990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:35 Heat of formation + Delta-G solvation = -136.513275 kcal Electronic energy + Delta-G solvation = -28975.974474 eV Core-core repulsion = 25083.605148 eV Total energy + Delta-G solvation = -3892.369326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.82529 -39.45991 -38.31220 -37.02816 -36.88742 -35.60002 -33.30775 -32.82895 -31.88793 -31.62274 -30.14889 -27.31357 -26.25379 -23.70596 -23.56295 -22.83033 -22.42371 -21.29713 -20.74108 -19.66198 -18.66138 -17.80006 -17.65307 -17.30138 -16.95151 -16.65053 -16.48633 -15.96834 -15.49329 -15.26058 -15.13445 -15.03040 -14.50501 -14.30958 -14.22205 -13.74564 -13.62229 -13.37037 -13.24281 -13.20059 -13.04672 -12.99342 -12.80338 -12.66538 -12.65329 -12.63427 -12.49242 -12.23915 -12.10562 -12.02770 -11.76794 -11.54030 -11.47707 -11.33119 -11.14067 -10.60752 -10.20474 -9.84942 -9.47997 -8.66900 -6.45131 -0.51667 0.38943 0.84924 1.39207 1.47020 1.49366 2.10298 2.19785 2.59002 2.75911 2.91036 3.44652 3.50267 3.56976 3.68873 3.98421 4.08380 4.12040 4.28239 4.29939 4.36927 4.39716 4.42708 4.54912 4.57356 4.83498 4.84642 4.86792 4.89328 4.97737 5.00061 5.02962 5.05557 5.11646 5.22634 5.23638 5.30618 5.35210 5.41080 5.53356 5.55246 5.86887 5.96254 6.07633 6.09433 6.11915 6.53663 6.82673 6.86594 8.31679 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.004502 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.831212 B = 6218.250762 C = 6638.529403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.141 3.859 4 H 0.082 0.918 5 N -1.095 6.095 6 S 2.712 3.288 7 O -0.989 6.989 8 O -0.991 6.991 9 C -0.639 4.639 10 C -0.137 4.137 11 C -0.123 4.123 12 C -0.126 4.126 13 C 0.069 3.931 14 C -0.501 4.501 15 H 0.076 0.924 16 C 0.041 3.959 17 N -0.830 5.830 18 Si 0.978 3.022 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.264 1.264 22 C -0.133 4.133 23 C 0.086 3.914 24 H 0.104 0.896 25 C -0.161 4.161 26 C -0.148 4.148 27 C 0.043 3.957 28 O -0.380 6.380 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.423 0.577 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.289 0.711 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -4.673 11.868 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.033 3.967 4 H 0.100 0.900 5 N -0.856 5.856 6 S 2.805 3.195 7 O -0.979 6.979 8 O -0.981 6.981 9 C -0.728 4.728 10 C -0.158 4.158 11 C -0.142 4.142 12 C -0.146 4.146 13 C 0.066 3.934 14 C -0.531 4.531 15 H 0.094 0.906 16 C -0.174 4.174 17 N -0.456 5.456 18 Si 0.799 3.201 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.188 1.188 22 C -0.154 4.154 23 C 0.026 3.974 24 H 0.121 0.879 25 C -0.199 4.199 26 C -0.186 4.186 27 C -0.034 4.034 28 O -0.299 6.299 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.260 0.740 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.559 -5.293 11.457 12.633 hybrid contribution -0.512 1.388 -0.597 1.595 sum -1.072 -3.905 10.860 11.591 Atomic orbital electron populations 1.21783 0.94078 1.02683 1.02270 1.21940 0.97254 0.95373 1.02938 1.21367 0.78366 0.97822 0.99105 0.89960 1.55199 1.15042 1.90261 1.25065 1.01006 0.72013 0.73755 0.72734 1.93508 1.77185 1.61259 1.65935 1.93491 1.31473 1.87910 1.85257 1.30175 1.06220 1.21365 1.15089 1.20441 0.99520 0.92034 1.03790 1.21116 0.97428 0.96858 0.98838 1.21580 0.93573 0.99392 1.00059 1.17974 0.92627 0.91525 0.91324 1.19750 1.10015 1.00246 1.23113 0.90560 1.26591 0.99566 0.94657 0.96578 1.69777 1.38670 1.08158 1.28998 0.85302 0.77834 0.78370 0.78587 1.18469 1.19160 1.18805 1.20908 0.96785 0.97899 0.99788 1.22956 0.98735 0.90638 0.85024 0.87851 1.23232 1.02335 0.95943 0.98406 1.23262 1.02525 0.98065 0.94726 1.23596 0.93814 0.88049 0.97894 1.88398 1.63022 1.38260 1.40211 0.93055 0.91378 0.91331 0.92225 0.90097 0.74010 0.85283 0.85597 0.87389 0.90017 0.87161 0.91070 0.90565 0.89496 0.89183 0.87796 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.63 16 2 C -0.14 -3.51 5.66 30.59 0.17 -3.34 16 3 C 0.14 3.92 2.07 44.99 0.09 4.02 16 4 H 0.08 2.60 7.26 -2.39 -0.02 2.58 16 5 N -1.09 -31.53 4.53 -169.38 -0.77 -32.30 16 6 S 2.71 99.44 5.65 -56.49 -0.32 99.12 16 7 O -0.99 -41.02 16.45 -128.00 -2.11 -43.12 16 8 O -0.99 -39.02 17.27 -128.00 -2.21 -41.23 16 9 C -0.64 -26.75 5.84 22.22 0.13 -26.62 16 10 C -0.14 -5.59 9.53 22.46 0.21 -5.38 16 11 C -0.12 -5.24 10.02 22.22 0.22 -5.02 16 12 C -0.13 -6.16 8.64 22.73 0.20 -5.96 16 13 C 0.07 3.50 5.51 -21.29 -0.12 3.38 16 14 C -0.50 -25.72 9.05 23.46 0.21 -25.51 16 15 H 0.08 3.82 7.87 -2.91 -0.02 3.80 16 16 C 0.04 1.94 5.22 85.26 0.44 2.38 16 17 N -0.83 -40.50 11.09 21.83 0.24 -40.25 16 18 Si 0.98 36.59 29.57 68.60 2.03 38.62 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.13 -6.22 8.65 22.73 0.20 -6.02 16 23 C 0.09 2.06 3.04 31.07 0.09 2.15 16 24 H 0.10 2.28 6.65 -2.39 -0.02 2.26 16 25 C -0.16 -4.06 6.44 31.91 0.21 -3.86 16 26 C -0.15 -2.79 7.16 32.10 0.23 -2.56 16 27 C 0.04 0.77 7.50 72.65 0.54 1.31 16 28 O -0.38 -8.54 9.87 -148.98 -1.47 -10.01 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.33 6.83 -2.39 -0.02 1.32 16 32 H 0.06 1.74 7.57 -2.38 -0.02 1.73 16 33 H 0.08 1.95 7.64 -2.39 -0.02 1.93 16 34 H 0.42 10.39 7.61 -96.75 -0.74 9.65 16 35 H 0.13 4.62 7.60 -2.91 -0.02 4.60 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.11 5.46 6.48 -2.90 -0.02 5.44 16 38 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 39 H 0.11 5.06 7.60 -2.91 -0.02 5.04 16 40 H 0.07 2.05 7.17 -2.39 -0.02 2.03 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.09 7.67 -2.39 -0.02 1.07 16 Total: -1.00 -61.69 372.71 -0.81 -62.50 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: 0.27 Total: 40.35 kcal Atomic # 6 Polarization: -77.19 SS G_CDS: 3.52 Total: -73.67 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -0.53 Total: -72.56 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -5.79 Total: -94.36 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: 99.44 SS G_CDS: -0.32 Total: 99.12 kcal Total: -61.69 -0.81 -62.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.017 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds