Wall clock time and date at job start Tue Mar 31 2020 22:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47077 * 304.12985 * 3 2 1 5 5 N 1.46496 * 109.46943 * 64.12613 * 3 2 1 6 6 S 1.65597 * 120.00243 * 233.82214 * 5 3 2 7 7 O 1.42095 * 106.40506 * 312.71819 * 6 5 3 8 8 O 1.42098 * 106.40354 * 179.79474 * 6 5 3 9 9 C 1.76199 * 107.21551 * 66.25901 * 6 5 3 10 10 C 1.38658 * 119.87710 * 268.06106 * 9 6 5 11 11 C 1.38615 * 120.50000 * 180.02562 * 10 9 6 12 12 C 1.37635 * 120.24874 * 359.97438 * 11 10 9 13 13 C 1.40689 * 119.74844 * 0.02562 * 12 11 10 14 14 C 1.41398 * 120.25011 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00268 * 151.19568 * 14 13 12 16 16 C 1.39945 * 119.99915 * 331.20809 * 14 13 12 17 17 N 1.30829 * 119.99641 * 343.29880 * 16 14 13 18 18 Si 1.86798 * 120.00264 * 163.29785 * 16 14 13 19 19 H 1.48498 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46985 * 119.99829 * 18 16 14 21 21 H 1.48500 * 109.47385 * 239.99668 * 18 16 14 22 22 C 1.37599 * 119.87499 * 88.08262 * 9 6 5 23 23 C 1.52997 * 109.47228 * 184.13328 * 3 2 1 24 24 H 1.09000 * 110.27604 * 65.63112 * 23 3 2 25 25 C 1.54944 * 110.30912 * 187.83500 * 23 3 2 26 26 C 1.55308 * 100.94360 * 155.35619 * 25 23 3 27 27 C 1.54386 * 102.25114 * 325.86552 * 26 25 23 28 28 O 1.43242 * 107.58884 * 21.35646 * 27 26 25 29 29 H 1.09000 * 109.47052 * 59.48195 * 1 2 3 30 30 H 1.09003 * 109.46747 * 179.47978 * 1 2 3 31 31 H 1.08997 * 109.47184 * 299.48419 * 1 2 3 32 32 H 1.09000 * 109.46839 * 239.99821 * 2 1 3 33 33 H 1.09000 * 109.46901 * 120.00150 * 2 1 3 34 34 H 0.97003 * 119.99903 * 53.82983 * 5 3 2 35 35 H 1.08001 * 119.74938 * 0.03946 * 10 9 6 36 36 H 1.08004 * 119.87085 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.12544 * 180.02562 * 12 11 10 38 38 H 0.96998 * 119.99979 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.13007 * 359.69796 * 22 9 6 40 40 H 1.08998 * 111.12134 * 273.27467 * 25 23 3 41 41 H 1.09006 * 111.12493 * 37.43644 * 25 23 3 42 42 H 1.08994 * 110.85049 * 207.67866 * 26 25 23 43 43 H 1.08996 * 110.84777 * 84.05436 * 26 25 23 44 44 H 1.08993 * 109.83045 * 261.84269 * 27 26 25 45 45 H 1.08996 * 109.90242 * 140.91188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6175 1.9773 -0.8507 5 7 1.6345 2.1038 1.2427 6 16 0.8055 3.5362 1.1862 7 8 1.4992 4.3652 0.2639 8 8 0.5587 3.9105 2.5345 9 6 -0.7677 3.2001 0.4673 10 6 -0.9423 3.3262 -0.9025 11 6 -2.1745 3.0656 -1.4815 12 6 -3.2394 2.6776 -0.7007 13 6 -3.0739 2.5464 0.6903 14 6 -4.1606 2.1479 1.5025 15 1 -3.9793 1.6103 2.4214 16 6 -5.4711 2.4500 1.1154 17 7 -5.6899 3.3617 0.2030 18 14 -6.9078 1.5515 1.9014 19 1 -6.3964 0.5751 2.8966 20 1 -7.7937 2.5319 2.5792 21 1 -7.6756 0.8328 0.8530 22 6 -1.8185 2.8140 1.2674 23 6 3.5665 1.4438 -0.1040 24 1 3.8797 1.0447 -1.0687 25 6 4.1176 2.8786 0.0917 26 6 5.5572 2.5761 0.5899 27 6 5.3549 1.2849 1.4117 28 8 4.1395 0.6730 0.9642 29 1 -0.3633 0.5219 -0.8853 30 1 -0.3633 -1.0277 -0.0093 31 1 -0.3633 0.5058 0.8945 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8518 1.7026 2.0988 35 1 -0.1120 3.6295 -1.5229 36 1 -2.2990 3.1666 -2.5496 37 1 -4.1984 2.4746 -1.1540 38 1 -6.5982 3.5713 -0.0651 39 1 -1.6791 2.7120 2.3335 40 1 4.1350 3.4247 -0.8515 41 1 3.5463 3.4194 0.8462 42 1 5.9269 3.3839 1.2214 43 1 6.2293 2.4001 -0.2499 44 1 5.2776 1.5292 2.4711 45 1 6.1922 0.6064 1.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:39 Heat of formation + Delta-G solvation = -134.304326 kcal Electronic energy + Delta-G solvation = -28724.747644 eV Core-core repulsion = 24832.474105 eV Total energy + Delta-G solvation = -3892.273538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63396 -39.44905 -38.26114 -37.22745 -36.89162 -35.61008 -33.07893 -32.45435 -31.87663 -31.58613 -30.45475 -27.31438 -26.45045 -23.65147 -23.17441 -22.78927 -22.16065 -21.57219 -20.67279 -19.63560 -18.57071 -17.78177 -17.62627 -17.34823 -16.77498 -16.64064 -16.45743 -16.00628 -15.58372 -15.20190 -15.06825 -14.99750 -14.57107 -14.29272 -14.11634 -13.75499 -13.49322 -13.32797 -13.25208 -13.15626 -13.03909 -13.03429 -12.96667 -12.79814 -12.60166 -12.53423 -12.21775 -12.15998 -11.97084 -11.89154 -11.68109 -11.56201 -11.50302 -11.30369 -11.11900 -10.60942 -10.13222 -9.78889 -9.47450 -8.70548 -6.43074 -0.47375 0.44202 0.87685 1.37267 1.43950 1.51759 2.14477 2.19575 2.57890 2.81341 2.91239 3.46634 3.53317 3.58188 3.76538 4.06570 4.09478 4.21899 4.27172 4.32870 4.39605 4.44946 4.47604 4.53154 4.78160 4.82666 4.86405 4.90515 4.92041 4.99037 5.02638 5.08458 5.10076 5.14397 5.22855 5.23396 5.33199 5.44291 5.48787 5.59342 5.60668 5.90577 5.96877 6.12920 6.15531 6.16775 6.55603 6.83371 6.88171 8.29372 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.003391 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.279077 B = 8255.556104 C = 8512.881501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.153 3.847 4 H 0.102 0.898 5 N -1.093 6.093 6 S 2.709 3.291 7 O -0.976 6.976 8 O -1.004 7.004 9 C -0.633 4.633 10 C -0.135 4.135 11 C -0.121 4.121 12 C -0.131 4.131 13 C 0.070 3.930 14 C -0.504 4.504 15 H 0.076 0.924 16 C 0.037 3.963 17 N -0.830 5.830 18 Si 0.980 3.020 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.135 4.135 23 C 0.076 3.924 24 H 0.103 0.897 25 C -0.159 4.159 26 C -0.151 4.151 27 C 0.044 3.956 28 O -0.388 6.388 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.424 0.576 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.290 0.710 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.829 -6.170 -3.140 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C 0.046 3.954 4 H 0.120 0.880 5 N -0.854 5.854 6 S 2.802 3.198 7 O -0.965 6.965 8 O -0.995 6.995 9 C -0.722 4.722 10 C -0.155 4.155 11 C -0.140 4.140 12 C -0.151 4.151 13 C 0.067 3.933 14 C -0.533 4.533 15 H 0.095 0.905 16 C -0.177 4.177 17 N -0.456 5.456 18 Si 0.801 3.199 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.156 4.156 23 C 0.017 3.983 24 H 0.120 0.880 25 C -0.197 4.197 26 C -0.189 4.189 27 C -0.032 4.032 28 O -0.308 6.308 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.260 0.740 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.843 -5.328 -3.048 17.927 hybrid contribution -1.590 -0.340 0.490 1.698 sum 15.254 -5.668 -2.558 16.473 Atomic orbital electron populations 1.21833 0.96338 1.01457 1.01783 1.21710 0.94846 0.94813 1.03929 1.21194 0.93626 0.95135 0.85479 0.88016 1.55234 1.71768 1.43232 1.15177 1.01091 0.73287 0.73163 0.72245 1.93508 1.72401 1.65310 1.65328 1.93501 1.86501 1.82177 1.37280 1.30149 1.20146 1.17484 1.04397 1.20442 0.98166 1.04812 0.92127 1.21100 0.93184 1.00309 0.99411 1.21504 0.97939 1.01904 0.93703 1.17932 0.92418 0.90041 0.92878 1.19828 0.91388 1.34310 1.07807 0.90546 1.26682 1.02783 0.93561 0.94698 1.69827 1.24497 1.24250 1.27075 0.85184 0.76762 0.78896 0.79063 1.18229 1.19357 1.18630 1.20751 0.94069 1.03537 0.97220 1.23428 0.92143 0.90759 0.91983 0.87970 1.23363 0.96303 0.96878 1.03147 1.23140 0.96781 0.97968 1.00999 1.23250 0.87171 0.94215 0.98555 1.88375 1.39041 1.50166 1.53180 0.93274 0.92495 0.93989 0.89066 0.90617 0.73958 0.84807 0.85605 0.87777 0.89976 0.87994 0.89038 0.92143 0.89595 0.88899 0.91565 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 9.46 71.98 0.68 -3.70 16 2 C -0.11 -2.50 5.38 30.60 0.16 -2.33 16 3 C 0.15 3.53 2.27 44.99 0.10 3.63 16 4 H 0.10 2.36 7.71 -2.39 -0.02 2.34 16 5 N -1.09 -29.73 3.70 -169.40 -0.63 -30.36 16 6 S 2.71 96.99 5.28 -56.49 -0.30 96.69 16 7 O -0.98 -35.56 15.11 -128.00 -1.93 -37.50 16 8 O -1.00 -42.73 17.32 -128.00 -2.22 -44.94 16 9 C -0.63 -26.27 5.13 22.22 0.11 -26.15 16 10 C -0.13 -5.33 9.34 22.46 0.21 -5.12 16 11 C -0.12 -5.10 10.02 22.22 0.22 -4.87 16 12 C -0.13 -6.44 8.67 22.73 0.20 -6.24 16 13 C 0.07 3.66 5.52 -21.29 -0.12 3.54 16 14 C -0.50 -26.65 9.04 23.46 0.21 -26.44 16 15 H 0.08 3.94 7.90 -2.91 -0.02 3.92 16 16 C 0.04 1.85 5.13 85.26 0.44 2.29 16 17 N -0.83 -42.56 11.19 21.83 0.24 -42.32 16 18 Si 0.98 37.77 29.59 68.60 2.03 39.80 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 22 C -0.13 -6.47 8.70 22.73 0.20 -6.27 16 23 C 0.08 1.49 3.32 31.26 0.10 1.60 16 24 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 25 C -0.16 -3.29 6.02 32.05 0.19 -3.10 16 26 C -0.15 -2.31 7.02 31.86 0.22 -2.09 16 27 C 0.04 0.73 7.79 72.45 0.56 1.29 16 28 O -0.39 -8.03 10.30 -148.98 -1.53 -9.57 16 29 H 0.05 1.47 7.98 -2.39 -0.02 1.45 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.35 6.65 -2.39 -0.02 1.33 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.66 7.77 -2.39 -0.02 1.64 16 34 H 0.42 10.48 8.96 -96.74 -0.87 9.61 16 35 H 0.13 4.51 7.56 -2.91 -0.02 4.49 16 36 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 5.34 6.45 -2.91 -0.02 5.32 16 38 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 39 H 0.10 4.90 7.65 -2.91 -0.02 4.87 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.52 5.46 -2.38 -0.01 1.51 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -64.45 372.21 -0.70 -65.15 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.13 Total: 37.01 kcal Atomic # 6 Polarization: -77.47 SS G_CDS: 3.51 Total: -73.96 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -0.38 Total: -72.67 kcal Atomic # 8 Polarization: -86.33 SS G_CDS: -5.69 Total: -92.01 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Atomic # 16 Polarization: 96.99 SS G_CDS: -0.30 Total: 96.69 kcal Total: -64.45 -0.70 -65.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.156 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds