Wall clock time and date at job start Tue Mar 31 2020 23:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48343 * 2 1 4 4 C 1.53087 * 109.48413 * 239.96450 * 2 1 3 5 5 C 1.53174 * 109.16835 * 182.41209 * 4 2 1 6 6 H 1.08999 * 109.61741 * 176.89348 * 5 4 2 7 7 N 1.46509 * 109.54119 * 297.11122 * 5 4 2 8 8 S 1.65597 * 120.00066 * 264.55530 * 7 5 4 9 9 O 1.42101 * 106.40241 * 311.45954 * 8 7 5 10 10 O 1.42100 * 106.40477 * 178.53817 * 8 7 5 11 11 C 1.76204 * 107.21856 * 65.00012 * 8 7 5 12 12 C 1.38665 * 119.87521 * 270.02495 * 11 8 7 13 13 C 1.38609 * 120.49854 * 180.02562 * 12 11 8 14 14 C 1.37636 * 120.25131 * 359.67128 * 13 12 11 15 15 C 1.40692 * 119.74257 * 0.57832 * 14 13 12 16 16 C 1.41400 * 120.24396 * 179.72193 * 15 14 13 17 17 H 1.08004 * 119.99704 * 155.44899 * 16 15 14 18 18 C 1.39941 * 119.99791 * 335.44206 * 16 15 14 19 19 N 1.30825 * 120.00491 * 342.30067 * 18 16 15 20 20 Si 1.86803 * 119.99860 * 162.29959 * 18 16 15 21 21 H 1.48494 * 109.47207 * 179.97438 * 20 18 16 22 22 H 1.48492 * 109.47306 * 300.00157 * 20 18 16 23 23 H 1.48505 * 109.47145 * 60.00269 * 20 18 16 24 24 C 1.37598 * 119.87729 * 89.99876 * 11 8 7 25 25 C 1.53169 * 109.03785 * 56.97701 * 5 4 2 26 26 C 1.53098 * 109.16438 * 303.02297 * 25 5 4 27 27 H 1.09004 * 109.47893 * 297.62265 * 26 25 5 28 28 C 1.53000 * 109.48172 * 177.60480 * 26 25 5 29 29 O 1.42901 * 109.47993 * 120.02118 * 2 1 3 30 30 H 1.09006 * 109.47136 * 299.98201 * 1 2 3 31 31 H 1.09009 * 109.46875 * 59.97653 * 1 2 3 32 32 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52242 * 62.49988 * 4 2 1 34 34 H 1.09000 * 109.52237 * 302.31738 * 4 2 1 35 35 H 0.97002 * 119.99678 * 84.55146 * 7 5 4 36 36 H 1.08001 * 119.74605 * 359.97438 * 12 11 8 37 37 H 1.08001 * 119.87218 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.13029 * 180.32176 * 14 13 12 39 39 H 0.96998 * 120.00464 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.12636 * 359.97438 * 24 11 8 41 41 H 1.08995 * 109.52622 * 62.92682 * 25 5 4 42 42 H 1.09002 * 109.52440 * 183.12184 * 25 5 4 43 43 H 1.08993 * 109.47352 * 59.99820 * 28 26 25 44 44 H 1.08994 * 109.47114 * 180.02562 * 28 26 25 45 45 H 1.09004 * 109.46625 * 299.99908 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9405 -1.3321 -2.0704 7 7 4.1059 0.5924 -1.2507 8 16 4.5679 1.2599 -2.6940 9 8 5.3891 0.2953 -3.3376 10 8 5.0026 2.5814 -2.4041 11 6 3.1183 1.4187 -3.6830 12 6 2.7357 0.3810 -4.5195 13 6 1.5981 0.4924 -5.3035 14 6 0.8312 1.6343 -5.2544 15 6 1.2127 2.6957 -4.4134 16 6 0.4359 3.8759 -4.3591 17 1 0.4674 4.5031 -3.4805 18 6 -0.3735 4.2313 -5.4440 19 7 -0.1664 3.6936 -6.6185 20 14 -1.7498 5.4734 -5.2150 21 1 -2.4536 5.6761 -6.5068 22 1 -2.7100 4.9673 -4.2017 23 1 -1.1794 6.7650 -4.7548 24 6 2.3699 2.5718 -3.6221 25 6 4.0176 -1.4601 0.0811 26 6 3.4307 -0.7091 1.2792 27 1 3.8193 0.3092 1.2958 28 6 3.8229 -1.4260 2.5727 29 8 2.0065 -0.6740 1.1665 30 1 -0.3634 0.5136 0.8902 31 1 -0.3633 0.5142 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7149 -0.1846 -2.1398 34 1 1.6443 -1.7376 -1.2707 35 1 4.1892 1.1041 -0.4308 36 1 3.3291 -0.5204 -4.5609 37 1 1.3097 -0.3219 -5.9516 38 1 -0.0577 1.7168 -5.8622 39 1 -0.7277 3.9397 -7.3704 40 1 2.6692 3.3784 -2.9693 41 1 3.6613 -2.4901 0.0868 42 1 5.1058 -1.4497 0.1423 43 1 4.9092 -1.4535 2.6579 44 1 3.4046 -0.8915 3.4255 45 1 3.4339 -2.4442 2.5561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:53 Heat of formation + Delta-G solvation = -120.122291 kcal Electronic energy + Delta-G solvation = -28736.433524 eV Core-core repulsion = 24844.774965 eV Total energy + Delta-G solvation = -3891.658559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.91148 -37.69527 -36.71548 -35.41534 -35.32092 -33.90669 -33.69330 -31.05749 -30.11838 -29.83754 -29.02854 -26.42627 -25.51803 -22.97387 -21.95067 -21.78725 -21.02055 -20.31959 -18.93470 -17.95853 -17.13971 -16.50978 -16.16650 -15.93625 -15.69750 -15.21352 -14.92817 -14.60972 -14.44648 -14.13575 -13.53093 -13.40594 -13.16889 -12.97614 -12.67603 -12.61866 -12.36498 -12.03398 -11.98910 -11.95107 -11.80952 -11.60990 -11.53948 -11.41465 -11.40784 -11.36539 -11.09624 -11.04215 -10.96067 -10.87717 -10.64176 -10.29013 -9.87040 -9.74877 -9.39322 -9.35374 -9.15430 -8.07218 -7.73812 -6.95490 -4.57041 0.97986 2.15509 2.60581 2.97549 2.99316 3.05154 3.49898 3.67183 3.80227 4.20206 4.40126 4.57249 4.67215 4.78674 4.90420 4.95891 5.07346 5.19892 5.33219 5.41319 5.42750 5.47934 5.50449 5.58382 5.71447 5.80077 5.88643 5.91979 6.00818 6.01144 6.10697 6.14207 6.21187 6.28174 6.34334 6.62079 6.72597 6.80075 6.99471 7.12334 7.18573 7.31128 7.34347 7.68838 7.76583 7.90641 8.36311 8.63526 8.67944 9.99977 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004056 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.853010 B = 6902.413918 C = 7914.089095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 H 0.061 0.939 4 C -0.173 4.173 5 C 0.152 3.848 6 H 0.098 0.902 7 N -1.118 6.118 8 S 2.686 3.314 9 O -0.975 6.975 10 O -0.972 6.972 11 C -0.629 4.629 12 C -0.148 4.148 13 C -0.119 4.119 14 C -0.118 4.118 15 C 0.093 3.907 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.793 5.793 20 Si 0.911 3.089 21 H -0.277 1.277 22 H -0.262 1.262 23 H -0.264 1.264 24 C -0.124 4.124 25 C -0.152 4.152 26 C 0.086 3.914 27 H 0.056 0.944 28 C -0.144 4.144 29 O -0.379 6.379 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -8.761 11.805 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 H 0.079 0.921 4 C -0.213 4.213 5 C 0.045 3.955 6 H 0.116 0.884 7 N -0.876 5.876 8 S 2.782 3.218 9 O -0.965 6.965 10 O -0.963 6.963 11 C -0.721 4.721 12 C -0.170 4.170 13 C -0.139 4.139 14 C -0.138 4.138 15 C 0.090 3.910 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.418 5.418 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.145 4.145 25 C -0.192 4.192 26 C 0.028 3.972 27 H 0.074 0.926 28 C -0.201 4.201 29 O -0.299 6.299 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.548 -8.706 11.309 14.498 hybrid contribution -1.180 0.912 -0.238 1.510 sum 1.368 -7.794 11.071 13.608 Atomic orbital electron populations 1.21767 0.92976 1.02621 1.02769 1.22013 0.95030 0.95269 0.84324 0.92061 1.22814 0.95432 1.02702 1.00320 1.20791 0.93326 0.81940 0.99446 0.88409 1.55775 1.82316 1.24033 1.25453 1.01759 0.74757 0.72641 0.72678 1.93513 1.65763 1.62514 1.74688 1.93542 1.81098 1.37350 1.84289 1.29689 1.21836 1.03392 1.17152 1.20052 0.99261 0.97183 1.00461 1.20796 0.96045 0.97837 0.99197 1.21632 0.99748 0.91711 1.00678 1.17653 0.90050 0.92746 0.90561 1.19582 1.21259 1.06383 1.01748 0.90004 1.25928 0.97344 0.96773 0.94224 1.69769 1.34024 1.37649 1.00321 0.86305 0.80683 0.80814 0.78668 1.20225 1.18675 1.18807 1.20727 0.95102 0.95084 1.03630 1.22478 1.01789 1.00520 0.94385 1.22004 0.81905 0.98426 0.94862 0.92604 1.21756 1.01152 1.01077 0.96090 1.87901 1.20209 1.78245 1.43550 0.92171 0.90414 0.92105 0.88568 0.90185 0.75561 0.87728 0.88451 0.85813 0.90462 0.87173 0.89737 0.90134 0.91195 0.91935 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.56 37.16 0.36 -1.40 16 2 C 0.09 1.17 3.10 -26.69 -0.08 1.09 16 3 H 0.06 0.82 7.63 -51.93 -0.40 0.42 16 4 C -0.17 -2.25 5.11 -26.60 -0.14 -2.38 16 5 C 0.15 1.90 3.15 -67.75 -0.21 1.69 16 6 H 0.10 1.25 7.51 -51.93 -0.39 0.86 16 7 N -1.12 -15.45 4.87 -4.73 -0.02 -15.47 16 8 S 2.69 49.06 5.71 -107.50 -0.61 48.44 16 9 O -0.97 -19.50 16.61 -57.17 -0.95 -20.45 16 10 O -0.97 -20.28 17.27 -57.17 -0.99 -21.27 16 11 C -0.63 -13.06 5.01 -39.66 -0.20 -13.25 16 12 C -0.15 -3.04 8.71 -39.29 -0.34 -3.38 16 13 C -0.12 -2.55 10.02 -39.66 -0.40 -2.94 16 14 C -0.12 -2.81 8.70 -38.88 -0.34 -3.15 16 15 C 0.09 2.32 5.57 -106.82 -0.60 1.72 16 16 C -0.46 -11.48 9.05 -37.74 -0.34 -11.82 16 17 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 18 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.79 -19.41 10.96 55.55 0.61 -18.80 16 20 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 C -0.12 -2.86 9.26 -38.87 -0.36 -3.22 16 25 C -0.15 -1.55 5.11 -26.59 -0.14 -1.68 16 26 C 0.09 0.89 3.07 -26.68 -0.08 0.81 16 27 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 28 C -0.14 -1.20 9.57 37.16 0.36 -0.84 16 29 O -0.38 -4.74 10.05 -35.23 -0.35 -5.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.45 6.26 -51.93 -0.32 1.12 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 4.89 7.08 -34.47 -0.24 4.65 16 36 H 0.10 1.94 7.60 -52.49 -0.40 1.54 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 39 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 40 H 0.11 2.47 7.60 -52.49 -0.40 2.07 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 370.60 15.07 5.58 5.58 Total: -1.00 -29.57 370.60 -10.97 -40.54 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.60 Total: 10.87 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: -2.60 Total: -37.05 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.59 Total: -34.27 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.29 Total: -46.81 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -0.61 Total: 48.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.57 -10.97 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.579 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds