Wall clock time and date at job start Tue Mar 31 2020 23:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48343 * 2 1 4 4 C 1.53087 * 109.48413 * 239.96450 * 2 1 3 5 5 C 1.53174 * 109.16835 * 182.41209 * 4 2 1 6 6 H 1.08999 * 109.61741 * 176.89348 * 5 4 2 7 7 N 1.46509 * 109.54119 * 297.11122 * 5 4 2 8 8 S 1.65597 * 120.00066 * 264.55530 * 7 5 4 9 9 O 1.42101 * 106.40241 * 311.45954 * 8 7 5 10 10 O 1.42100 * 106.40477 * 178.53817 * 8 7 5 11 11 C 1.76204 * 107.21856 * 65.00012 * 8 7 5 12 12 C 1.38665 * 119.87521 * 270.02495 * 11 8 7 13 13 C 1.38609 * 120.49854 * 180.02562 * 12 11 8 14 14 C 1.37636 * 120.25131 * 359.67128 * 13 12 11 15 15 C 1.40692 * 119.74257 * 0.57832 * 14 13 12 16 16 C 1.41400 * 120.24396 * 179.72193 * 15 14 13 17 17 H 1.08004 * 119.99704 * 155.44899 * 16 15 14 18 18 C 1.39941 * 119.99791 * 335.44206 * 16 15 14 19 19 N 1.30825 * 120.00491 * 342.30067 * 18 16 15 20 20 Si 1.86803 * 119.99860 * 162.29959 * 18 16 15 21 21 H 1.48494 * 109.47207 * 179.97438 * 20 18 16 22 22 H 1.48492 * 109.47306 * 300.00157 * 20 18 16 23 23 H 1.48505 * 109.47145 * 60.00269 * 20 18 16 24 24 C 1.37598 * 119.87729 * 89.99876 * 11 8 7 25 25 C 1.53169 * 109.03785 * 56.97701 * 5 4 2 26 26 C 1.53098 * 109.16438 * 303.02297 * 25 5 4 27 27 H 1.09004 * 109.47893 * 297.62265 * 26 25 5 28 28 C 1.53000 * 109.48172 * 177.60480 * 26 25 5 29 29 O 1.42901 * 109.47993 * 120.02118 * 2 1 3 30 30 H 1.09006 * 109.47136 * 299.98201 * 1 2 3 31 31 H 1.09009 * 109.46875 * 59.97653 * 1 2 3 32 32 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.52242 * 62.49988 * 4 2 1 34 34 H 1.09000 * 109.52237 * 302.31738 * 4 2 1 35 35 H 0.97002 * 119.99678 * 84.55146 * 7 5 4 36 36 H 1.08001 * 119.74605 * 359.97438 * 12 11 8 37 37 H 1.08001 * 119.87218 * 179.97438 * 13 12 11 38 38 H 1.08000 * 120.13029 * 180.32176 * 14 13 12 39 39 H 0.96998 * 120.00464 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.12636 * 359.97438 * 24 11 8 41 41 H 1.08995 * 109.52622 * 62.92682 * 25 5 4 42 42 H 1.09002 * 109.52440 * 183.12184 * 25 5 4 43 43 H 1.08993 * 109.47352 * 59.99820 * 28 26 25 44 44 H 1.08994 * 109.47114 * 180.02562 * 28 26 25 45 45 H 1.09004 * 109.46625 * 299.99908 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2494 5 6 3.5711 -0.7711 -1.2120 6 1 3.9405 -1.3321 -2.0704 7 7 4.1059 0.5924 -1.2507 8 16 4.5679 1.2599 -2.6940 9 8 5.3891 0.2953 -3.3376 10 8 5.0026 2.5814 -2.4041 11 6 3.1183 1.4187 -3.6830 12 6 2.7357 0.3810 -4.5195 13 6 1.5981 0.4924 -5.3035 14 6 0.8312 1.6343 -5.2544 15 6 1.2127 2.6957 -4.4134 16 6 0.4359 3.8759 -4.3591 17 1 0.4674 4.5031 -3.4805 18 6 -0.3735 4.2313 -5.4440 19 7 -0.1664 3.6936 -6.6185 20 14 -1.7498 5.4734 -5.2150 21 1 -2.4536 5.6761 -6.5068 22 1 -2.7100 4.9673 -4.2017 23 1 -1.1794 6.7650 -4.7548 24 6 2.3699 2.5718 -3.6221 25 6 4.0176 -1.4601 0.0811 26 6 3.4307 -0.7091 1.2792 27 1 3.8193 0.3092 1.2958 28 6 3.8229 -1.4260 2.5727 29 8 2.0065 -0.6740 1.1665 30 1 -0.3634 0.5136 0.8902 31 1 -0.3633 0.5142 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7149 -0.1846 -2.1398 34 1 1.6443 -1.7376 -1.2707 35 1 4.1892 1.1041 -0.4308 36 1 3.3291 -0.5204 -4.5609 37 1 1.3097 -0.3219 -5.9516 38 1 -0.0577 1.7168 -5.8622 39 1 -0.7277 3.9397 -7.3704 40 1 2.6692 3.3784 -2.9693 41 1 3.6613 -2.4901 0.0868 42 1 5.1058 -1.4497 0.1423 43 1 4.9092 -1.4535 2.6579 44 1 3.4046 -0.8915 3.4255 45 1 3.4339 -2.4442 2.5561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:52 Heat of formation + Delta-G solvation = -138.760222 kcal Electronic energy + Delta-G solvation = -28737.241725 eV Core-core repulsion = 24844.774965 eV Total energy + Delta-G solvation = -3892.466760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.86670 -39.44277 -38.29696 -36.93676 -36.47456 -35.66269 -34.58452 -32.09437 -31.89771 -31.57750 -29.95353 -27.39775 -27.24020 -23.94192 -23.64002 -22.78839 -22.68361 -21.42767 -20.37514 -19.52535 -18.58637 -17.72137 -17.41607 -17.35005 -16.83234 -16.68054 -16.51506 -16.13862 -15.50760 -15.24231 -15.06587 -15.02500 -14.32748 -14.26523 -13.82788 -13.73112 -13.57896 -13.35166 -13.24169 -13.20816 -13.07579 -13.05910 -12.89843 -12.85439 -12.78353 -12.64990 -12.56168 -12.54490 -12.21977 -12.04803 -11.82969 -11.55932 -11.38805 -11.20235 -11.11933 -10.57757 -10.19805 -9.81726 -9.53515 -8.72564 -6.44099 -0.51681 0.42210 0.86571 1.37070 1.46086 1.49562 2.09406 2.17731 2.55468 2.77728 2.78478 3.42936 3.53415 3.69683 3.79178 3.85985 3.96996 4.21324 4.25301 4.32708 4.37137 4.45949 4.54197 4.62369 4.65952 4.75501 4.83102 4.86383 4.89789 4.92362 5.02538 5.06752 5.09954 5.18551 5.20179 5.21974 5.29318 5.31173 5.39784 5.42315 5.58115 5.90857 5.94936 6.02662 6.12274 6.39632 6.53971 6.81219 6.86116 8.25201 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004056 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.853010 B = 6902.413918 C = 7914.089095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.050 0.950 4 C -0.171 4.171 5 C 0.145 3.855 6 H 0.100 0.900 7 N -1.101 6.101 8 S 2.715 3.285 9 O -0.985 6.985 10 O -0.998 6.998 11 C -0.632 4.632 12 C -0.141 4.141 13 C -0.120 4.120 14 C -0.137 4.137 15 C 0.067 3.933 16 C -0.499 4.499 17 H 0.079 0.921 18 C 0.038 3.962 19 N -0.824 5.824 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.262 1.262 24 C -0.142 4.142 25 C -0.146 4.146 26 C 0.076 3.924 27 H 0.057 0.943 28 C -0.140 4.140 29 O -0.387 6.387 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.421 0.579 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.291 0.709 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -10.225 13.023 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.068 0.932 4 C -0.211 4.211 5 C 0.038 3.962 6 H 0.118 0.882 7 N -0.863 5.863 8 S 2.808 3.192 9 O -0.975 6.975 10 O -0.989 6.989 11 C -0.722 4.722 12 C -0.162 4.162 13 C -0.139 4.139 14 C -0.157 4.157 15 C 0.064 3.936 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.177 4.177 19 N -0.450 5.450 20 Si 0.801 3.199 21 H -0.192 1.192 22 H -0.181 1.181 23 H -0.187 1.187 24 C -0.163 4.163 25 C -0.185 4.185 26 C 0.018 3.982 27 H 0.075 0.925 28 C -0.197 4.197 29 O -0.307 6.307 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.258 0.742 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.026 -10.173 12.517 16.411 hybrid contribution -1.224 1.232 -0.544 1.820 sum 1.802 -8.940 11.973 15.051 Atomic orbital electron populations 1.21738 0.92867 1.03063 1.02347 1.21942 0.95281 0.94784 0.84681 0.93177 1.22769 0.95891 1.03143 0.99263 1.21043 0.92950 0.80961 1.01217 0.88154 1.55399 1.81980 1.24723 1.24189 1.00877 0.73566 0.71855 0.72905 1.93496 1.65697 1.62635 1.75710 1.93504 1.81365 1.39247 1.84765 1.30117 1.22195 1.02509 1.17348 1.20397 0.98814 0.97772 0.99192 1.21103 0.95822 0.97704 0.99309 1.21616 1.00189 0.92715 1.01203 1.17968 0.90890 0.93300 0.91472 1.19835 1.23244 1.07192 1.02501 0.90317 1.26716 0.99017 0.98497 0.93483 1.69813 1.35070 1.39076 1.01039 0.85267 0.77543 0.78146 0.78931 1.19159 1.18138 1.18654 1.20760 0.95416 0.96106 1.04020 1.22479 1.02776 1.00775 0.92439 1.22261 0.80820 0.98972 0.96127 0.92547 1.21759 1.02383 1.00818 0.94703 1.87900 1.21662 1.78042 1.43074 0.91716 0.91737 0.91207 0.90962 0.88750 0.74173 0.85185 0.85730 0.87103 0.89804 0.87611 0.88239 0.88538 0.89298 0.92111 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.56 71.98 0.69 -2.74 16 2 C 0.09 2.25 3.10 30.62 0.10 2.35 16 3 H 0.05 1.33 7.63 -2.39 -0.02 1.32 16 4 C -0.17 -4.21 5.11 30.68 0.16 -4.05 16 5 C 0.14 3.30 3.15 45.10 0.14 3.44 16 6 H 0.10 2.28 7.51 -2.39 -0.02 2.26 16 7 N -1.10 -28.69 4.87 -168.89 -0.82 -29.51 16 8 S 2.71 96.49 5.71 -56.49 -0.32 96.16 16 9 O -0.99 -37.53 16.61 -128.00 -2.13 -39.65 16 10 O -1.00 -41.31 17.27 -128.00 -2.21 -43.52 16 11 C -0.63 -26.22 5.01 22.22 0.11 -26.11 16 12 C -0.14 -5.64 8.71 22.46 0.20 -5.44 16 13 C -0.12 -5.10 10.02 22.22 0.22 -4.87 16 14 C -0.14 -6.74 8.70 22.73 0.20 -6.54 16 15 C 0.07 3.45 5.57 -21.29 -0.12 3.33 16 16 C -0.50 -25.91 9.05 23.46 0.21 -25.70 16 17 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 18 C 0.04 1.86 5.14 85.26 0.44 2.30 16 19 N -0.82 -41.44 10.96 21.83 0.24 -41.20 16 20 Si 0.98 36.85 29.59 68.60 2.03 38.88 16 21 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 C -0.14 -6.74 9.26 22.73 0.21 -6.53 16 25 C -0.15 -2.49 5.11 30.68 0.16 -2.33 16 26 C 0.08 1.38 3.07 30.63 0.09 1.48 16 27 H 0.06 1.02 6.70 -2.38 -0.02 1.00 16 28 C -0.14 -1.91 9.57 71.98 0.69 -1.22 16 29 O -0.39 -8.94 10.05 -148.98 -1.50 -10.44 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 2.14 6.26 -2.39 -0.01 2.13 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.42 9.39 7.08 -96.74 -0.68 8.70 16 36 H 0.13 4.51 7.60 -2.91 -0.02 4.49 16 37 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 38 H 0.11 5.64 6.16 -2.91 -0.02 5.63 16 39 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 40 H 0.11 4.96 7.60 -2.91 -0.02 4.94 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -64.12 370.60 -0.90 -65.02 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.32 Total: 36.91 kcal Atomic # 6 Polarization: -76.14 SS G_CDS: 3.49 Total: -72.65 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.58 Total: -70.71 kcal Atomic # 8 Polarization: -87.78 SS G_CDS: -5.83 Total: -93.61 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: 96.49 SS G_CDS: -0.32 Total: 96.16 kcal Total: -64.12 -0.90 -65.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.738 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds