Wall clock time and date at job start Tue Mar 31 2020 23:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49123 * 2 1 4 4 C 1.53087 * 109.48090 * 120.02615 * 2 1 3 5 5 C 1.53178 * 109.16320 * 62.37637 * 4 2 1 6 6 N 1.46501 * 109.54564 * 176.84815 * 5 4 2 7 7 S 1.65600 * 120.00197 * 145.17595 * 6 5 4 8 8 O 1.42105 * 106.40062 * 311.45906 * 7 6 5 9 9 O 1.42102 * 106.40285 * 178.54105 * 7 6 5 10 10 C 1.76197 * 107.21922 * 64.99686 * 7 6 5 11 11 C 1.38658 * 119.87124 * 89.99662 * 10 7 6 12 12 C 1.38615 * 120.50205 * 180.02562 * 11 10 7 13 13 C 1.37640 * 120.24525 * 359.95984 * 12 11 10 14 14 C 1.40697 * 119.74475 * 0.02562 * 13 12 11 15 15 C 1.41395 * 120.24393 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00367 * 154.94396 * 15 14 13 17 17 C 1.39947 * 120.00112 * 334.94953 * 15 14 13 18 18 N 1.30829 * 119.99956 * 342.63644 * 17 15 14 19 19 Si 1.86798 * 120.00202 * 162.64260 * 17 15 14 20 20 H 1.48502 * 109.47002 * 265.67922 * 19 17 15 21 21 H 1.48498 * 109.47426 * 25.68136 * 19 17 15 22 22 H 1.48504 * 109.47311 * 145.68322 * 19 17 15 23 23 C 1.37589 * 119.87978 * 270.28756 * 10 7 6 24 24 C 1.53177 * 109.11138 * 56.93639 * 5 4 2 25 25 C 1.53104 * 109.15229 * 303.15430 * 24 5 4 26 26 H 1.08999 * 109.41373 * 297.48901 * 25 24 5 27 27 C 1.53005 * 109.47906 * 177.50256 * 25 24 5 28 28 O 1.42898 * 109.48214 * 239.97034 * 2 1 3 29 29 H 1.08993 * 109.47033 * 299.97445 * 1 2 3 30 30 H 1.08999 * 109.46671 * 59.97327 * 1 2 3 31 31 H 1.08995 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52241 * 302.46746 * 4 2 1 33 33 H 1.09002 * 109.52328 * 182.27870 * 4 2 1 34 34 H 1.09003 * 109.53887 * 297.02404 * 5 4 2 35 35 H 0.97001 * 120.00059 * 325.17743 * 6 5 4 36 36 H 1.07997 * 119.75191 * 0.03231 * 11 10 7 37 37 H 1.08004 * 119.87698 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.12978 * 179.97438 * 13 12 11 39 39 H 0.96999 * 120.00332 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.12945 * 359.96986 * 23 10 7 41 41 H 1.09000 * 109.52006 * 62.96427 * 24 5 4 42 42 H 1.08997 * 109.52335 * 183.16306 * 24 5 4 43 43 H 1.08999 * 109.47179 * 299.96627 * 27 25 24 44 44 H 1.08999 * 109.47047 * 59.97072 * 27 25 24 45 45 H 1.08999 * 109.46952 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 1.5757 -2.1813 1.2122 6 7 2.1225 -2.8995 2.3661 7 16 1.2341 -4.0908 3.0968 8 8 -0.0629 -3.5506 3.3099 9 8 2.0422 -4.6085 4.1448 10 6 1.0443 -5.3930 1.9252 11 6 1.9825 -6.4123 1.8674 12 6 1.8464 -7.4428 0.9505 13 6 0.7751 -7.4651 0.0865 14 6 -0.1833 -6.4362 0.1363 15 6 -1.2876 -6.4483 -0.7466 16 1 -2.2009 -5.9392 -0.4762 17 6 -1.1973 -7.1200 -1.9710 18 7 -0.0254 -7.4405 -2.4564 19 14 -2.7499 -7.5589 -2.9124 20 1 -3.1614 -8.9441 -2.5701 21 1 -3.8355 -6.6148 -2.5444 22 1 -2.4871 -7.4668 -4.3711 23 6 -0.0312 -5.3915 1.0670 24 6 2.0747 -2.8336 -0.0808 25 6 1.5646 -2.0284 -1.2790 26 1 0.4750 -2.0550 -1.2958 27 6 2.1100 -2.6373 -2.5723 28 8 2.0066 -0.6742 -1.1663 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5143 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6421 -0.2356 2.1398 33 1 3.1298 -0.6874 1.2709 34 1 0.4868 -2.2179 1.2424 35 1 3.0049 -2.6773 2.7021 36 1 2.8258 -6.4032 2.5420 37 1 2.5834 -8.2314 0.9140 38 1 0.6710 -8.2687 -0.6275 39 1 0.0373 -7.9057 -3.3052 40 1 -0.7586 -4.5944 1.1107 41 1 3.1647 -2.8426 -0.0871 42 1 1.7006 -3.8556 -0.1411 43 1 3.1995 -2.6111 -2.5551 44 1 1.7727 -3.6703 -2.6581 45 1 1.7463 -2.0643 -3.4252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:12 Heat of formation + Delta-G solvation = -137.573580 kcal Electronic energy + Delta-G solvation = -29060.553408 eV Core-core repulsion = 25168.138104 eV Total energy + Delta-G solvation = -3892.415304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.97642 -39.45165 -38.29999 -36.94947 -36.71508 -35.64917 -34.27794 -32.36587 -31.89608 -31.59310 -29.55831 -27.61982 -27.32012 -23.99493 -23.64813 -23.16707 -22.76927 -20.86973 -20.29033 -19.59864 -18.56342 -17.83744 -17.61692 -17.17139 -16.95434 -16.54180 -16.46082 -15.88455 -15.74502 -15.26401 -15.10694 -15.02551 -14.87334 -14.30780 -13.84822 -13.73472 -13.54399 -13.37340 -13.23530 -13.13726 -13.08839 -13.07000 -13.05443 -12.83178 -12.80872 -12.64614 -12.57125 -12.39650 -12.21528 -12.10136 -11.92573 -11.53986 -11.34865 -11.14627 -11.00185 -10.53447 -10.38365 -9.81194 -9.53631 -8.71363 -6.43081 -0.52138 0.40868 0.85416 1.38079 1.45601 1.49913 2.06874 2.17726 2.55741 2.76404 2.83606 3.42042 3.53245 3.63210 3.74155 3.92832 3.97598 4.14981 4.18892 4.32373 4.34330 4.43101 4.44950 4.52743 4.60814 4.66673 4.80267 4.84676 4.90949 4.92116 5.01865 5.05580 5.07141 5.13650 5.18756 5.22165 5.26877 5.33360 5.41420 5.41472 5.57218 5.90188 5.95231 6.09483 6.13028 6.34697 6.54190 6.81844 6.86285 8.25971 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009682 B = 0.005364 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.171915 B = 5218.430553 C = 6915.193638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.087 3.913 3 H 0.132 0.868 4 C -0.146 4.146 5 C 0.147 3.853 6 N -1.096 6.096 7 S 2.713 3.287 8 O -0.992 6.992 9 O -0.990 6.990 10 C -0.636 4.636 11 C -0.146 4.146 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.069 3.931 15 C -0.494 4.494 16 H 0.076 0.924 17 C 0.043 3.957 18 N -0.817 5.817 19 Si 0.974 3.026 20 H -0.264 1.264 21 H -0.260 1.260 22 H -0.266 1.266 23 C -0.136 4.136 24 C -0.169 4.169 25 C 0.091 3.909 26 H 0.056 0.944 27 C -0.140 4.140 28 O -0.382 6.382 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.428 0.572 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.291 0.709 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 11.660 0.607 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.029 3.971 3 H 0.150 0.850 4 C -0.185 4.185 5 C 0.040 3.960 6 N -0.857 5.857 7 S 2.806 3.194 8 O -0.982 6.982 9 O -0.980 6.980 10 C -0.725 4.725 11 C -0.167 4.167 12 C -0.142 4.142 13 C -0.157 4.157 14 C 0.066 3.934 15 C -0.523 4.523 16 H 0.095 0.905 17 C -0.173 4.173 18 N -0.442 5.442 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.184 1.184 22 H -0.190 1.190 23 C -0.157 4.157 24 C -0.208 4.208 25 C 0.033 3.967 26 H 0.074 0.926 27 C -0.197 4.197 28 O -0.302 6.302 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.266 0.734 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.465 11.631 1.083 12.506 hybrid contribution -0.434 -1.183 -0.877 1.535 sum 4.031 10.449 0.205 11.201 Atomic orbital electron populations 1.22550 0.96385 1.02415 1.03850 1.22363 0.93683 0.97219 0.83827 0.85040 1.22510 1.03316 0.92638 1.00074 1.20961 0.98160 0.93110 0.83760 1.55248 1.32948 1.52312 1.45215 1.00911 0.72617 0.72929 0.72906 1.93502 1.40928 1.78801 1.85008 1.93498 1.69962 1.80247 1.54275 1.30154 1.05070 1.18302 1.19005 1.20404 0.99148 0.96064 1.01104 1.21106 0.98219 0.98742 0.96109 1.21624 0.96222 0.98623 0.99271 1.17957 0.93234 0.90472 0.91784 1.19800 0.99746 1.31112 1.01657 0.90538 1.26603 1.00205 0.92572 0.97894 1.69802 1.26425 1.29492 1.18493 0.85294 0.78154 0.79556 0.77445 1.18896 1.18401 1.19038 1.20747 0.97121 0.98939 0.98874 1.22780 1.02812 1.00365 0.94860 1.21927 0.97976 0.81875 0.94922 0.92626 1.21690 1.01986 1.00093 0.95911 1.87947 1.73896 1.24281 1.44044 0.89691 0.91243 0.93460 0.88361 0.88910 0.90029 0.73440 0.85464 0.85867 0.87009 0.89830 0.87510 0.89916 0.91681 0.91433 0.92355 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.92 8.65 71.98 0.62 -3.30 16 2 C 0.09 1.70 3.91 30.62 0.12 1.82 16 3 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.15 -2.83 5.17 30.68 0.16 -2.67 16 5 C 0.15 3.93 2.56 45.11 0.12 4.05 16 6 N -1.10 -29.54 5.48 -168.89 -0.93 -30.47 16 7 S 2.71 97.79 5.71 -56.49 -0.32 97.46 16 8 O -0.99 -40.53 16.61 -128.00 -2.13 -42.66 16 9 O -0.99 -38.38 17.27 -128.00 -2.21 -40.59 16 10 C -0.64 -26.80 5.17 22.22 0.11 -26.68 16 11 C -0.15 -6.10 9.53 22.46 0.21 -5.89 16 12 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 13 C -0.14 -6.77 8.69 22.73 0.20 -6.58 16 14 C 0.07 3.50 5.57 -21.29 -0.12 3.39 16 15 C -0.49 -25.18 9.05 23.46 0.21 -24.97 16 16 H 0.08 3.83 7.90 -2.91 -0.02 3.80 16 17 C 0.04 2.05 5.15 85.26 0.44 2.49 16 18 N -0.82 -39.42 10.97 21.83 0.24 -39.18 16 19 Si 0.97 36.31 29.59 68.60 2.03 38.34 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 23 C -0.14 -6.36 8.25 22.73 0.19 -6.17 16 24 C -0.17 -5.00 5.03 30.69 0.15 -4.84 16 25 C 0.09 2.59 2.93 30.63 0.09 2.68 16 26 H 0.06 1.68 6.34 -2.39 -0.02 1.67 16 27 C -0.14 -3.92 9.57 71.98 0.69 -3.23 16 28 O -0.38 -9.63 10.24 -148.98 -1.53 -11.16 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.16 4.98 -2.39 -0.01 1.14 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.44 5.99 -2.39 -0.01 2.43 16 35 H 0.43 8.83 8.84 -96.75 -0.86 7.97 16 36 H 0.13 4.69 7.60 -2.91 -0.02 4.67 16 37 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.11 5.68 6.19 -2.91 -0.02 5.67 16 39 H 0.29 12.69 8.30 -92.71 -0.77 11.92 16 40 H 0.11 4.91 7.61 -2.91 -0.02 4.88 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 2.37 6.22 -2.39 -0.01 2.36 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -62.19 367.76 -1.26 -63.46 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: 0.16 Total: 39.80 kcal Atomic # 6 Polarization: -78.43 SS G_CDS: 3.42 Total: -75.01 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -0.69 Total: -69.64 kcal Atomic # 8 Polarization: -88.55 SS G_CDS: -5.86 Total: -94.41 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 16 Polarization: 97.79 SS G_CDS: -0.32 Total: 97.46 kcal Total: -62.19 -1.26 -63.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.116 kcal (2) G-P(sol) polarization free energy of solvation -62.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds