Wall clock time and date at job start Tue Mar 31 2020 23:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48023 * 2 1 4 4 C 1.53088 * 109.48130 * 239.97532 * 2 1 3 5 5 C 1.53174 * 109.16361 * 182.39868 * 4 2 1 6 6 N 1.46498 * 109.54694 * 176.84668 * 5 4 2 7 7 S 1.65599 * 120.00488 * 145.17186 * 6 5 4 8 8 O 1.42098 * 106.40411 * 311.46668 * 7 6 5 9 9 O 1.42093 * 106.40615 * 178.53992 * 7 6 5 10 10 C 1.76209 * 107.21427 * 64.99992 * 7 6 5 11 11 C 1.38654 * 119.87540 * 270.02354 * 10 7 6 12 12 C 1.38615 * 120.49642 * 179.97438 * 11 10 7 13 13 C 1.37644 * 120.25032 * 359.73753 * 12 11 10 14 14 C 1.40692 * 119.74231 * 0.51424 * 13 12 11 15 15 C 1.41392 * 120.24405 * 179.76370 * 14 13 12 16 16 H 1.08004 * 120.00105 * 150.05236 * 15 14 13 17 17 C 1.39952 * 120.00183 * 330.33057 * 15 14 13 18 18 N 1.30826 * 119.99922 * 161.48432 * 17 15 14 19 19 Si 1.86802 * 119.99573 * 341.48632 * 17 15 14 20 20 H 1.48501 * 109.46875 * 95.41193 * 19 17 15 21 21 H 1.48498 * 109.46829 * 215.40731 * 19 17 15 22 22 H 1.48498 * 109.47379 * 335.40951 * 19 17 15 23 23 C 1.37600 * 119.86957 * 90.00264 * 10 7 6 24 24 C 1.53181 * 109.11324 * 56.93237 * 5 4 2 25 25 C 1.53107 * 109.15472 * 303.15938 * 24 5 4 26 26 H 1.08999 * 109.47698 * 177.50153 * 25 24 5 27 27 C 1.53004 * 109.41327 * 297.48086 * 25 24 5 28 28 O 1.42894 * 109.49217 * 57.46892 * 25 24 5 29 29 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47222 * 300.02548 * 1 2 3 31 31 H 1.08995 * 109.47180 * 60.02502 * 1 2 3 32 32 H 1.09002 * 109.52473 * 62.49018 * 4 2 1 33 33 H 1.08998 * 109.57384 * 302.33135 * 4 2 1 34 34 H 1.09004 * 109.53991 * 297.02210 * 5 4 2 35 35 H 0.96999 * 119.99505 * 325.17863 * 6 5 4 36 36 H 1.07994 * 119.75195 * 359.95753 * 11 10 7 37 37 H 1.08002 * 119.87531 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.12720 * 180.26052 * 13 12 11 39 39 H 0.97003 * 119.99347 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.13108 * 359.97438 * 23 10 7 41 41 H 1.09005 * 109.51880 * 62.97198 * 24 5 4 42 42 H 1.08992 * 109.52164 * 183.15700 * 24 5 4 43 43 H 1.08997 * 109.47197 * 179.97438 * 27 25 24 44 44 H 1.09002 * 109.47426 * 299.99853 * 27 25 24 45 45 H 1.09001 * 109.47145 * 59.99719 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7706 -1.2123 6 7 4.0659 -1.5255 -2.3661 7 16 5.4851 -1.0852 -3.0970 8 8 5.4084 0.3176 -3.3101 9 8 5.7037 -2.0198 -4.1449 10 6 6.7762 -1.3405 -1.9254 11 6 7.1399 -0.3164 -1.0643 12 6 8.1534 -0.5034 -0.1373 13 6 8.8067 -1.7123 -0.0585 14 6 8.4497 -2.7568 -0.9308 15 6 9.1172 -4.0013 -0.8625 16 1 8.5967 -4.9088 -1.1307 17 6 10.4508 -4.0580 -0.4417 18 7 10.9596 -5.1911 -0.0310 19 14 11.5042 -2.5155 -0.4664 20 1 11.4869 -1.8827 0.8770 21 1 12.8994 -2.8746 -0.8264 22 1 10.9637 -1.5629 -1.4693 23 6 7.4193 -2.5557 -1.8682 24 6 4.0198 -1.4584 0.0808 25 6 3.4309 -0.7090 1.2789 26 1 3.7104 -1.2199 2.2003 27 6 3.9760 0.7205 1.3027 28 8 2.0068 -0.6740 1.1664 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 1.7147 -0.1843 -2.1399 33 1 1.6446 -1.7374 -1.2720 34 1 3.9688 0.2439 -1.2426 35 1 3.5621 -2.2833 -2.7020 36 1 6.6300 0.6341 -1.1165 37 1 8.4288 0.3014 0.5283 38 1 9.5932 -1.8571 0.6674 39 1 11.8838 -5.2302 0.2609 40 1 7.1339 -3.3522 -2.5393 41 1 3.6650 -2.4890 0.0871 42 1 5.1080 -1.4466 0.1409 43 1 3.5570 1.2551 2.1551 44 1 5.0624 0.6937 1.3884 45 1 3.6969 1.2312 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:17 Heat of formation + Delta-G solvation = -116.326341 kcal Electronic energy + Delta-G solvation = -28679.805333 eV Core-core repulsion = 24788.311379 eV Total energy + Delta-G solvation = -3891.493954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.09963 -37.99390 -36.83600 -35.69105 -35.45124 -33.84882 -33.48194 -31.40847 -30.78161 -30.22486 -28.69275 -26.75802 -25.44739 -23.10577 -22.45857 -22.25120 -20.96522 -19.74003 -19.14652 -18.10077 -17.22595 -16.71765 -16.38367 -16.29215 -15.55690 -15.28742 -14.99678 -14.78755 -14.69458 -14.13622 -14.04649 -13.74624 -13.22680 -13.04152 -12.92850 -12.80033 -12.36442 -12.30972 -12.09008 -11.98490 -11.86255 -11.76816 -11.71156 -11.68915 -11.52654 -11.44982 -11.25946 -11.10374 -11.02412 -10.83501 -10.45492 -10.17958 -10.05417 -9.82431 -9.57844 -9.42656 -9.22021 -8.32933 -7.93199 -7.13672 -4.69241 0.84521 1.84885 2.35799 2.95270 3.07929 3.16579 3.34373 3.65482 3.80950 4.04572 4.26366 4.48751 4.62222 4.70569 4.83129 4.91402 5.00691 5.06908 5.12238 5.15964 5.25653 5.33494 5.39925 5.54013 5.56237 5.72171 5.75792 5.83561 5.87300 5.92809 5.94026 6.04302 6.12956 6.15469 6.18088 6.31624 6.40142 6.52158 6.80605 6.99144 7.10210 7.13654 7.19155 7.33052 7.56612 7.71629 8.13076 8.36955 8.56256 9.88051 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.003880 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.406837 B = 7215.424179 C = 7963.188873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.064 0.936 4 C -0.153 4.153 5 C 0.152 3.848 6 N -1.115 6.115 7 S 2.686 3.314 8 O -0.972 6.972 9 O -0.969 6.969 10 C -0.623 4.623 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.198 4.198 14 C 0.074 3.926 15 C -0.442 4.442 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.798 5.798 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.243 1.243 23 C -0.100 4.100 24 C -0.176 4.176 25 C 0.093 3.907 26 H 0.106 0.894 27 C -0.192 4.192 28 O -0.375 6.375 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.288 0.712 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 8.805 2.253 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.082 0.918 4 C -0.192 4.192 5 C 0.045 3.955 6 N -0.871 5.871 7 S 2.781 3.219 8 O -0.962 6.962 9 O -0.959 6.959 10 C -0.714 4.714 11 C -0.180 4.180 12 C -0.110 4.110 13 C -0.218 4.218 14 C 0.070 3.930 15 C -0.470 4.470 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.421 5.421 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.121 4.121 24 C -0.215 4.215 25 C 0.035 3.965 26 H 0.124 0.876 27 C -0.249 4.249 28 O -0.294 6.294 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.248 0.752 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.454 8.978 1.639 17.094 hybrid contribution 1.097 -0.032 0.461 1.190 sum -13.357 8.947 2.100 16.213 Atomic orbital electron populations 1.21754 0.93047 1.02925 1.02351 1.22059 0.94965 0.95628 0.84799 0.91791 1.22531 0.94736 1.02790 0.99163 1.20822 0.94622 0.95381 0.84716 1.55658 1.41234 1.45021 1.45219 1.01787 0.72963 0.73386 0.73742 1.93521 1.86479 1.31504 1.84716 1.93557 1.85121 1.63937 1.53292 1.29916 1.19802 1.02723 1.19004 1.20010 1.02066 0.96786 0.99167 1.20685 0.96169 0.96373 0.97764 1.21301 1.03481 0.95357 1.01632 1.17772 0.92352 0.92852 0.89992 1.19534 0.96449 0.93828 1.37190 0.88676 1.26170 0.98924 0.97850 0.90696 1.69681 1.16229 1.27795 1.28439 0.86370 0.77964 0.81926 0.80502 1.19405 1.21303 1.16638 1.20838 0.98989 0.94265 0.98047 1.22857 1.03592 1.00845 0.94185 1.22138 0.80185 0.95617 0.98604 0.87612 1.22522 1.02744 0.97148 1.02494 1.87972 1.21113 1.77628 1.42709 0.91814 0.91835 0.91155 0.90210 0.90295 0.88791 0.75165 0.87228 0.87961 0.87645 0.90130 0.86318 0.90293 0.88643 0.91866 0.90640 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 37.16 0.36 -0.76 16 2 C 0.08 0.81 2.94 -26.68 -0.08 0.73 16 3 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 4 C -0.15 -1.51 4.95 -26.60 -0.13 -1.64 16 5 C 0.15 1.84 2.56 -67.75 -0.17 1.67 16 6 N -1.11 -14.72 5.48 -4.73 -0.03 -14.74 16 7 S 2.69 46.88 5.72 -107.50 -0.61 46.27 16 8 O -0.97 -18.49 16.61 -57.17 -0.95 -19.43 16 9 O -0.97 -19.42 17.26 -57.17 -0.99 -20.41 16 10 C -0.62 -12.29 5.16 -39.66 -0.20 -12.49 16 11 C -0.16 -3.03 8.55 -39.29 -0.34 -3.36 16 12 C -0.09 -1.78 10.02 -39.66 -0.40 -2.18 16 13 C -0.20 -4.41 7.19 -38.87 -0.28 -4.69 16 14 C 0.07 1.78 5.11 -106.83 -0.55 1.23 16 15 C -0.44 -11.34 9.57 -37.74 -0.36 -11.71 16 16 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.08 2.10 5.40 -17.34 -0.09 2.00 16 18 N -0.80 -20.33 13.93 55.55 0.77 -19.55 16 19 Si 0.91 19.79 24.52 -169.99 -4.17 15.62 16 20 H -0.27 -5.58 6.70 56.52 0.38 -5.21 16 21 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.24 -5.50 6.87 56.52 0.39 -5.11 16 23 C -0.10 -2.22 9.26 -38.87 -0.36 -2.58 16 24 C -0.18 -2.20 5.25 -26.58 -0.14 -2.34 16 25 C 0.09 1.04 3.91 -26.67 -0.10 0.94 16 26 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 27 C -0.19 -1.99 8.65 37.16 0.32 -1.67 16 28 O -0.37 -4.32 10.24 -35.23 -0.36 -4.68 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.18 5.99 -51.93 -0.31 0.87 16 35 H 0.41 4.54 8.84 -34.47 -0.30 4.24 16 36 H 0.11 1.86 7.60 -52.49 -0.40 1.46 16 37 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.11 2.32 4.73 -52.49 -0.25 2.08 16 39 H 0.29 6.62 8.30 -40.82 -0.34 6.29 16 40 H 0.12 2.55 7.60 -52.49 -0.40 2.15 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.37 6.24 -51.93 -0.32 1.04 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.63 4.98 -51.93 -0.26 0.37 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -29.74 362.55 -9.79 -39.54 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.39 Total: 8.77 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: -2.53 Total: -36.83 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.75 Total: -34.30 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -2.30 Total: -44.53 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.17 Total: 15.62 kcal Atomic # 16 Polarization: 46.88 SS G_CDS: -0.61 Total: 46.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.74 -9.79 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.790 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds