Wall clock time and date at job start Tue Mar 31 2020 23:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48023 * 2 1 4 4 C 1.53088 * 109.48130 * 239.97532 * 2 1 3 5 5 C 1.53174 * 109.16361 * 182.39868 * 4 2 1 6 6 N 1.46498 * 109.54694 * 176.84668 * 5 4 2 7 7 S 1.65599 * 120.00488 * 145.17186 * 6 5 4 8 8 O 1.42098 * 106.40411 * 311.46668 * 7 6 5 9 9 O 1.42093 * 106.40615 * 178.53992 * 7 6 5 10 10 C 1.76209 * 107.21427 * 64.99992 * 7 6 5 11 11 C 1.38654 * 119.87540 * 270.02354 * 10 7 6 12 12 C 1.38615 * 120.49642 * 179.97438 * 11 10 7 13 13 C 1.37644 * 120.25032 * 359.73753 * 12 11 10 14 14 C 1.40692 * 119.74231 * 0.51424 * 13 12 11 15 15 C 1.41392 * 120.24405 * 179.76370 * 14 13 12 16 16 H 1.08004 * 120.00105 * 150.05236 * 15 14 13 17 17 C 1.39952 * 120.00183 * 330.33057 * 15 14 13 18 18 N 1.30826 * 119.99922 * 161.48432 * 17 15 14 19 19 Si 1.86802 * 119.99573 * 341.48632 * 17 15 14 20 20 H 1.48501 * 109.46875 * 95.41193 * 19 17 15 21 21 H 1.48498 * 109.46829 * 215.40731 * 19 17 15 22 22 H 1.48498 * 109.47379 * 335.40951 * 19 17 15 23 23 C 1.37600 * 119.86957 * 90.00264 * 10 7 6 24 24 C 1.53181 * 109.11324 * 56.93237 * 5 4 2 25 25 C 1.53107 * 109.15472 * 303.15938 * 24 5 4 26 26 H 1.08999 * 109.47698 * 177.50153 * 25 24 5 27 27 C 1.53004 * 109.41327 * 297.48086 * 25 24 5 28 28 O 1.42894 * 109.49217 * 57.46892 * 25 24 5 29 29 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47222 * 300.02548 * 1 2 3 31 31 H 1.08995 * 109.47180 * 60.02502 * 1 2 3 32 32 H 1.09002 * 109.52473 * 62.49018 * 4 2 1 33 33 H 1.08998 * 109.57384 * 302.33135 * 4 2 1 34 34 H 1.09004 * 109.53991 * 297.02210 * 5 4 2 35 35 H 0.96999 * 119.99505 * 325.17863 * 6 5 4 36 36 H 1.07994 * 119.75195 * 359.95753 * 11 10 7 37 37 H 1.08002 * 119.87531 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.12720 * 180.26052 * 13 12 11 39 39 H 0.97003 * 119.99347 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.13108 * 359.97438 * 23 10 7 41 41 H 1.09005 * 109.51880 * 62.97198 * 24 5 4 42 42 H 1.08992 * 109.52164 * 183.15700 * 24 5 4 43 43 H 1.08997 * 109.47197 * 179.97438 * 27 25 24 44 44 H 1.09002 * 109.47426 * 299.99853 * 27 25 24 45 45 H 1.09001 * 109.47145 * 59.99719 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0277 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5711 -0.7706 -1.2123 6 7 4.0659 -1.5255 -2.3661 7 16 5.4851 -1.0852 -3.0970 8 8 5.4084 0.3176 -3.3101 9 8 5.7037 -2.0198 -4.1449 10 6 6.7762 -1.3405 -1.9254 11 6 7.1399 -0.3164 -1.0643 12 6 8.1534 -0.5034 -0.1373 13 6 8.8067 -1.7123 -0.0585 14 6 8.4497 -2.7568 -0.9308 15 6 9.1172 -4.0013 -0.8625 16 1 8.5967 -4.9088 -1.1307 17 6 10.4508 -4.0580 -0.4417 18 7 10.9596 -5.1911 -0.0310 19 14 11.5042 -2.5155 -0.4664 20 1 11.4869 -1.8827 0.8770 21 1 12.8994 -2.8746 -0.8264 22 1 10.9637 -1.5629 -1.4693 23 6 7.4193 -2.5557 -1.8682 24 6 4.0198 -1.4584 0.0808 25 6 3.4309 -0.7090 1.2789 26 1 3.7104 -1.2199 2.2003 27 6 3.9760 0.7205 1.3027 28 8 2.0068 -0.6740 1.1664 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8902 32 1 1.7147 -0.1843 -2.1399 33 1 1.6446 -1.7374 -1.2720 34 1 3.9688 0.2439 -1.2426 35 1 3.5621 -2.2833 -2.7020 36 1 6.6300 0.6341 -1.1165 37 1 8.4288 0.3014 0.5283 38 1 9.5932 -1.8571 0.6674 39 1 11.8838 -5.2302 0.2609 40 1 7.1339 -3.3522 -2.5393 41 1 3.6650 -2.4890 0.0871 42 1 5.1080 -1.4466 0.1409 43 1 3.5570 1.2551 2.1551 44 1 5.0624 0.6937 1.3884 45 1 3.6969 1.2312 0.3810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:16 Heat of formation + Delta-G solvation = -137.173405 kcal Electronic energy + Delta-G solvation = -28680.709330 eV Core-core repulsion = 24788.311379 eV Total energy + Delta-G solvation = -3892.397951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97054 -39.69602 -38.33971 -36.97991 -36.71582 -35.64730 -34.25943 -32.56464 -32.33935 -31.89247 -29.53302 -27.57884 -27.24507 -24.14973 -23.95526 -23.10443 -22.67581 -20.87129 -20.36413 -19.67172 -18.56858 -18.07825 -17.76594 -17.21889 -16.98990 -16.71920 -16.52570 -15.99773 -15.64561 -15.59449 -15.09131 -14.86858 -14.80310 -14.68557 -14.06491 -13.83704 -13.61392 -13.49111 -13.40759 -13.28952 -13.23960 -13.12926 -12.94600 -12.82040 -12.77073 -12.61788 -12.53237 -12.38517 -12.14485 -12.04541 -11.88909 -11.79220 -11.57699 -11.09342 -11.02963 -10.45831 -10.40149 -9.98044 -9.67998 -8.97662 -6.60102 -0.58514 0.17599 0.65118 1.19953 1.35335 1.42193 1.98782 2.05107 2.40386 2.71501 2.86921 3.29643 3.36610 3.65155 3.76034 3.92832 3.95699 4.13275 4.17089 4.21546 4.32979 4.38193 4.44248 4.44720 4.56710 4.60073 4.75006 4.76104 4.81632 4.88022 4.90753 5.02952 5.06120 5.10073 5.18470 5.22092 5.27934 5.33713 5.37528 5.42601 5.43389 5.62633 5.76275 5.98751 6.05572 6.24047 6.38566 6.57846 6.68915 8.10638 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.003880 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.406837 B = 7215.424179 C = 7963.188873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.072 0.928 4 C -0.149 4.149 5 C 0.146 3.854 6 N -1.099 6.099 7 S 2.712 3.288 8 O -0.980 6.980 9 O -0.996 6.996 10 C -0.630 4.630 11 C -0.137 4.137 12 C -0.092 4.092 13 C -0.202 4.202 14 C 0.057 3.943 15 C -0.484 4.484 16 H 0.060 0.940 17 C 0.049 3.951 18 N -0.842 5.842 19 Si 0.956 3.044 20 H -0.247 1.247 21 H -0.276 1.276 22 H -0.255 1.255 23 C -0.120 4.120 24 C -0.175 4.175 25 C 0.093 3.907 26 H 0.106 0.894 27 C -0.191 4.191 28 O -0.386 6.386 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.427 0.573 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.296 0.704 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 12.240 2.693 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.020 3.980 3 H 0.090 0.910 4 C -0.188 4.188 5 C 0.039 3.961 6 N -0.860 5.860 7 S 2.804 3.196 8 O -0.970 6.970 9 O -0.986 6.986 10 C -0.718 4.718 11 C -0.157 4.157 12 C -0.111 4.111 13 C -0.222 4.222 14 C 0.054 3.946 15 C -0.513 4.513 16 H 0.078 0.922 17 C -0.166 4.166 18 N -0.468 5.468 19 Si 0.779 3.221 20 H -0.172 1.172 21 H -0.202 1.202 22 H -0.179 1.179 23 C -0.141 4.141 24 C -0.214 4.214 25 C 0.035 3.965 26 H 0.124 0.876 27 C -0.248 4.248 28 O -0.306 6.306 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.263 0.737 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.094 12.402 2.097 20.426 hybrid contribution 1.330 -0.950 0.297 1.661 sum -14.764 11.452 2.394 18.838 Atomic orbital electron populations 1.21769 0.91560 1.03088 1.03402 1.22266 0.96143 0.95717 0.83880 0.91008 1.22542 0.92619 1.03520 1.00136 1.21045 0.96394 0.95032 0.83640 1.55330 1.39445 1.45703 1.45517 1.01022 0.72956 0.72739 0.72871 1.93509 1.86748 1.31961 1.84745 1.93522 1.85791 1.64686 1.54635 1.30347 1.20358 1.01788 1.19330 1.20536 1.00596 0.97398 0.97167 1.21132 0.95379 0.96371 0.98181 1.21490 1.03702 0.95870 1.01132 1.17897 0.92970 0.92838 0.90902 1.19490 0.97638 0.93638 1.40556 0.92221 1.26800 0.99351 1.00328 0.90161 1.69710 1.17065 1.29386 1.30615 0.85627 0.76827 0.78684 0.80989 1.17160 1.20223 1.17899 1.20834 0.99573 0.95382 0.98283 1.22822 1.02333 1.01006 0.95288 1.22115 0.80331 0.96149 0.97880 0.87610 1.22513 1.02569 0.96466 1.03223 1.87972 1.20958 1.78029 1.43655 0.92112 0.91622 0.89313 0.88608 0.89882 0.88566 0.73659 0.84076 0.83853 0.87459 0.89360 0.87167 0.90853 0.90604 0.90848 0.90867 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.57 71.98 0.69 -1.07 16 2 C 0.08 1.27 2.94 30.63 0.09 1.36 16 3 H 0.07 1.07 6.34 -2.38 -0.02 1.05 16 4 C -0.15 -2.48 4.95 30.68 0.15 -2.33 16 5 C 0.15 3.15 2.56 45.11 0.12 3.27 16 6 N -1.10 -26.80 5.48 -168.89 -0.93 -27.73 16 7 S 2.71 90.00 5.72 -56.49 -0.32 89.68 16 8 O -0.98 -34.35 16.61 -128.00 -2.13 -36.47 16 9 O -1.00 -39.35 17.26 -128.00 -2.21 -41.55 16 10 C -0.63 -24.01 5.16 22.22 0.11 -23.90 16 11 C -0.14 -4.76 8.55 22.46 0.19 -4.56 16 12 C -0.09 -3.31 10.02 22.22 0.22 -3.09 16 13 C -0.20 -8.79 7.19 22.73 0.16 -8.63 16 14 C 0.06 2.80 5.11 -21.29 -0.11 2.70 16 15 C -0.48 -26.41 9.57 23.46 0.22 -26.18 16 16 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 17 C 0.05 2.56 5.40 85.26 0.46 3.02 16 18 N -0.84 -44.96 13.93 21.83 0.30 -44.65 16 19 Si 0.96 40.81 24.52 68.60 1.68 42.49 16 20 H -0.25 -9.59 6.70 99.48 0.67 -8.93 16 21 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.26 -11.24 6.87 99.48 0.68 -10.56 16 23 C -0.12 -5.41 9.26 22.73 0.21 -5.20 16 24 C -0.18 -4.10 5.25 30.69 0.16 -3.93 16 25 C 0.09 1.91 3.91 30.63 0.12 2.03 16 26 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 27 C -0.19 -3.39 8.65 71.98 0.62 -2.77 16 28 O -0.39 -8.02 10.24 -148.98 -1.53 -9.55 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 2.08 5.99 -2.38 -0.01 2.07 16 35 H 0.43 8.57 8.84 -96.75 -0.86 7.71 16 36 H 0.14 4.09 7.60 -2.91 -0.02 4.07 16 37 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.11 4.59 4.73 -2.91 -0.01 4.57 16 39 H 0.30 14.13 8.30 -92.71 -0.77 13.36 16 40 H 0.11 5.02 7.60 -2.91 -0.02 5.00 16 41 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.08 2.06 6.24 -2.39 -0.01 2.05 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.12 4.98 -2.39 -0.01 1.11 16 Total: -1.00 -65.69 362.55 -1.60 -67.29 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.10 Total: 29.78 kcal Atomic # 6 Polarization: -72.71 SS G_CDS: 3.43 Total: -69.28 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -0.62 Total: -72.38 kcal Atomic # 8 Polarization: -81.71 SS G_CDS: -5.86 Total: -87.57 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.68 Total: 42.49 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.32 Total: 89.68 kcal Total: -65.69 -1.60 -67.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.884 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds