Wall clock time and date at job start Tue Mar 31 2020 23:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47923 * 2 1 4 4 C 1.53097 * 109.47923 * 120.02457 * 2 1 3 5 5 C 1.53170 * 109.16253 * 62.38414 * 4 2 1 6 6 H 1.08995 * 109.54701 * 297.02366 * 5 4 2 7 7 C 1.53006 * 109.54033 * 176.84673 * 5 4 2 8 8 N 1.46507 * 109.46801 * 174.99956 * 7 5 4 9 9 S 1.65605 * 119.99469 * 165.00091 * 8 7 5 10 10 O 1.42095 * 106.40321 * 311.46048 * 9 8 7 11 11 O 1.42105 * 106.40009 * 178.54013 * 9 8 7 12 12 C 1.76196 * 107.21932 * 65.00101 * 9 8 7 13 13 C 1.38663 * 119.87664 * 89.99491 * 12 9 8 14 14 C 1.38605 * 120.50123 * 180.02562 * 13 12 9 15 15 C 1.37640 * 120.25306 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.74061 * 359.97438 * 15 14 13 17 17 C 1.41395 * 120.24200 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00145 * 335.04262 * 17 16 15 19 19 C 1.39950 * 119.99518 * 155.04462 * 17 16 15 20 20 N 1.30820 * 120.00167 * 334.22508 * 19 17 16 21 21 Si 1.86803 * 119.99868 * 154.23167 * 19 17 16 22 22 H 1.48504 * 109.46926 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46706 * 239.99734 * 21 19 17 24 24 H 1.48494 * 109.47046 * 119.99540 * 21 19 17 25 25 C 1.37596 * 119.87783 * 270.28039 * 12 9 8 26 26 C 1.53178 * 109.04112 * 56.98403 * 5 4 2 27 27 C 1.53093 * 109.15674 * 303.01926 * 26 5 4 28 28 O 1.42898 * 109.48823 * 239.97027 * 2 1 3 29 29 H 1.08997 * 109.47251 * 299.97728 * 1 2 3 30 30 H 1.08999 * 109.47283 * 59.98021 * 1 2 3 31 31 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.51911 * 302.47518 * 4 2 1 33 33 H 1.08998 * 109.57149 * 182.32090 * 4 2 1 34 34 H 1.09002 * 109.47366 * 55.00294 * 7 5 4 35 35 H 1.08994 * 109.47207 * 294.99989 * 7 5 4 36 36 H 0.96996 * 120.00440 * 344.99925 * 8 7 5 37 37 H 1.07996 * 119.74722 * 0.02578 * 13 12 9 38 38 H 1.08005 * 119.87821 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.13267 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00040 * 354.24160 * 20 19 17 41 41 H 1.08004 * 120.12382 * 359.96980 * 25 12 9 42 42 H 1.08997 * 109.52380 * 62.91657 * 26 5 4 43 43 H 1.08995 * 109.52680 * 183.11616 * 26 5 4 44 44 H 1.09003 * 109.48192 * 297.61864 * 27 26 5 45 45 H 1.09000 * 109.47959 * 177.59220 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5759 -2.1813 1.2122 6 1 0.4870 -2.2181 1.2424 7 6 2.1469 -2.9313 2.4174 8 7 1.6066 -4.2928 2.4460 9 16 2.3147 -5.4446 3.4023 10 8 3.7103 -5.3786 3.1432 11 8 1.5486 -6.6299 3.2367 12 6 2.0950 -4.9399 5.0761 13 6 0.9690 -5.3439 5.7772 14 6 0.7828 -4.9541 7.0942 15 6 1.7165 -4.1604 7.7211 16 6 2.8635 -3.7453 7.0198 17 6 3.8296 -2.9304 7.6536 18 1 3.5447 -2.3013 8.4839 19 6 5.1552 -2.9390 7.2048 20 7 5.6312 -3.9917 6.5911 21 14 6.2449 -1.4473 7.4823 22 1 5.4737 -0.3964 8.1937 23 1 6.7063 -0.9210 6.1726 24 1 7.4206 -1.8386 8.3006 25 6 3.0385 -4.1415 5.6808 26 6 2.0768 -2.8322 -0.0807 27 6 1.5649 -2.0285 -1.2789 28 8 2.0067 -0.6742 -1.1663 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5141 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6419 -0.2356 2.1399 33 1 3.1297 -0.6872 1.2722 34 1 1.8694 -2.4109 3.3341 35 1 3.2332 -2.9731 2.3380 36 1 0.8342 -4.5196 1.9050 37 1 0.2314 -5.9670 5.2934 38 1 -0.0978 -5.2749 7.6310 39 1 1.5693 -3.8575 8.7472 40 1 5.0940 -4.7963 6.5207 41 1 3.9128 -3.8246 5.1315 42 1 3.1668 -2.8398 -0.0861 43 1 1.7042 -3.8547 -0.1419 44 1 0.4754 -2.0552 -1.2958 45 1 1.9536 -2.4622 -2.2003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:54 Heat of formation + Delta-G solvation = -126.597291 kcal Electronic energy + Delta-G solvation = -28121.381188 eV Core-core repulsion = 24229.441852 eV Total energy + Delta-G solvation = -3891.939336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.05877 -37.89332 -36.72555 -36.13137 -35.30016 -34.07330 -32.98243 -32.07296 -30.31000 -29.49325 -28.68616 -25.89228 -25.33214 -23.65824 -22.13378 -21.95707 -21.22333 -19.62256 -19.01214 -18.28553 -17.24674 -16.45189 -16.23564 -16.18381 -15.78420 -15.24303 -14.90414 -14.72889 -14.58912 -14.21898 -14.02634 -13.69728 -13.53234 -13.41414 -12.89183 -12.59837 -12.49829 -12.32000 -12.20439 -11.93815 -11.64396 -11.56162 -11.49665 -11.45204 -11.36469 -11.22773 -11.18652 -11.02433 -10.76001 -10.70073 -10.50703 -10.21114 -9.91201 -9.70939 -9.60792 -9.19992 -9.11704 -8.31164 -7.86024 -7.36043 -4.63349 0.99341 2.01575 2.57234 3.08790 3.15127 3.26760 3.53228 3.69338 3.91454 4.18301 4.36449 4.51926 4.53677 4.57641 4.77868 4.89263 5.00950 5.12482 5.17753 5.19060 5.26368 5.27044 5.42268 5.52784 5.56273 5.70238 5.77738 5.81143 5.86567 5.91721 5.94694 6.00913 6.10232 6.12199 6.29413 6.34570 6.57773 6.72536 7.01442 7.06604 7.15926 7.24618 7.46365 7.53645 7.56818 7.88296 7.99258 8.48344 8.64770 9.90037 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.004129 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.330456 B = 6779.483137 C = 8167.136747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.088 3.912 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.094 4.094 6 H 0.080 0.920 7 C 0.123 3.877 8 N -1.120 6.120 9 S 2.687 3.313 10 O -0.963 6.963 11 O -0.976 6.976 12 C -0.620 4.620 13 C -0.170 4.170 14 C -0.096 4.096 15 C -0.189 4.189 16 C 0.078 3.922 17 C -0.517 4.517 18 H 0.080 0.920 19 C 0.034 3.966 20 N -0.782 5.782 21 Si 1.069 2.931 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.276 1.276 25 C -0.120 4.120 26 C -0.153 4.153 27 C 0.057 3.943 28 O -0.378 6.378 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.301 0.699 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 7.079 -11.280 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.030 3.970 3 H 0.120 0.880 4 C -0.185 4.185 5 C -0.114 4.114 6 H 0.099 0.901 7 C -0.004 4.004 8 N -0.878 5.878 9 S 2.782 3.218 10 O -0.953 6.953 11 O -0.967 6.967 12 C -0.712 4.712 13 C -0.191 4.191 14 C -0.115 4.115 15 C -0.208 4.208 16 C 0.074 3.926 17 C -0.545 4.545 18 H 0.099 0.901 19 C -0.189 4.189 20 N -0.404 5.404 21 Si 0.892 3.108 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.201 1.201 25 C -0.141 4.141 26 C -0.191 4.191 27 C -0.019 4.019 28 O -0.297 6.297 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.244 0.756 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.626 7.012 -11.965 14.966 hybrid contribution -2.411 -0.570 1.081 2.703 sum -8.037 6.442 -10.884 14.985 Atomic orbital electron populations 1.22471 0.96521 1.02825 1.02664 1.22155 0.93351 0.96398 0.85096 0.87990 1.22227 1.02618 0.94977 0.98704 1.21405 1.00804 0.94745 0.94401 0.90146 1.21334 0.99168 0.81399 0.98454 1.55557 1.46677 1.24159 1.61435 1.01788 0.73344 0.72467 0.74243 1.93570 1.30805 1.86106 1.84784 1.93520 1.72150 1.44277 1.86746 1.29899 1.04667 1.14331 1.22302 1.19973 0.97194 1.05831 0.96058 1.20680 0.97941 0.98275 0.94654 1.21187 0.98064 1.03101 0.98497 1.17744 0.92954 0.90863 0.91077 1.20635 0.94865 1.22486 1.16499 0.90144 1.27141 0.97695 1.02205 0.91849 1.70436 1.40380 1.02672 1.26947 0.83583 0.75319 0.73797 0.78063 1.20029 1.19605 1.20147 1.21017 0.98091 0.99391 0.95600 1.22281 1.02677 0.99745 0.94416 1.22588 0.98625 0.82333 0.98370 1.87982 1.73778 1.24762 1.43217 0.91335 0.92027 0.91791 0.90219 0.90298 0.91121 0.90022 0.75584 0.87529 0.88334 0.88213 0.88490 0.85822 0.90427 0.90628 0.92991 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 8.65 37.16 0.32 -1.16 16 2 C 0.09 0.81 3.91 -26.68 -0.10 0.71 16 3 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.15 -1.47 4.92 -26.59 -0.13 -1.60 16 5 C -0.09 -0.99 1.99 -90.44 -0.18 -1.17 16 6 H 0.08 0.76 6.62 -51.93 -0.34 0.41 16 7 C 0.12 1.68 5.62 -4.03 -0.02 1.65 16 8 N -1.12 -16.11 5.58 -10.61 -0.06 -16.17 16 9 S 2.69 52.04 5.73 -107.50 -0.62 51.42 16 10 O -0.96 -21.57 16.74 -57.17 -0.96 -22.53 16 11 O -0.98 -20.34 17.27 -57.17 -0.99 -21.32 16 12 C -0.62 -13.72 5.94 -39.66 -0.24 -13.96 16 13 C -0.17 -3.65 9.53 -39.29 -0.37 -4.02 16 14 C -0.10 -2.05 10.02 -39.66 -0.40 -2.45 16 15 C -0.19 -4.37 9.80 -38.87 -0.38 -4.75 16 16 C 0.08 1.96 5.30 -106.82 -0.57 1.39 16 17 C -0.52 -13.05 8.98 -37.74 -0.34 -13.39 16 18 H 0.08 1.96 7.96 -52.49 -0.42 1.54 16 19 C 0.03 0.84 4.93 -17.34 -0.09 0.76 16 20 N -0.78 -20.63 12.32 55.55 0.68 -19.94 16 21 Si 1.07 20.78 30.00 -169.99 -5.10 15.68 16 22 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.12 -2.93 7.43 -38.87 -0.29 -3.22 16 26 C -0.15 -1.58 5.27 -26.59 -0.14 -1.72 16 27 C 0.06 0.54 6.51 37.21 0.24 0.78 16 28 O -0.38 -4.18 10.60 -35.23 -0.37 -4.55 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 36 H 0.41 4.73 8.42 -34.47 -0.29 4.44 16 37 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 38 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.30 8.25 6.71 -40.82 -0.27 7.97 16 41 H 0.12 3.15 6.04 -52.48 -0.32 2.83 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 44 H 0.05 0.43 6.34 -51.93 -0.33 0.10 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -31.15 369.73 -10.97 -42.12 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.45 Total: 11.87 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: -2.68 Total: -42.15 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.62 Total: -36.12 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.32 Total: -48.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.10 Total: 15.68 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.62 Total: 51.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.15 -10.97 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.475 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds