Wall clock time and date at job start Tue Mar 31 2020 23:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47923 * 2 1 4 4 C 1.53097 * 109.47923 * 120.02457 * 2 1 3 5 5 C 1.53170 * 109.16253 * 62.38414 * 4 2 1 6 6 H 1.08995 * 109.54701 * 297.02366 * 5 4 2 7 7 C 1.53006 * 109.54033 * 176.84673 * 5 4 2 8 8 N 1.46507 * 109.46801 * 174.99956 * 7 5 4 9 9 S 1.65605 * 119.99469 * 165.00091 * 8 7 5 10 10 O 1.42095 * 106.40321 * 311.46048 * 9 8 7 11 11 O 1.42105 * 106.40009 * 178.54013 * 9 8 7 12 12 C 1.76196 * 107.21932 * 65.00101 * 9 8 7 13 13 C 1.38663 * 119.87664 * 89.99491 * 12 9 8 14 14 C 1.38605 * 120.50123 * 180.02562 * 13 12 9 15 15 C 1.37640 * 120.25306 * 359.97438 * 14 13 12 16 16 C 1.40705 * 119.74061 * 359.97438 * 15 14 13 17 17 C 1.41395 * 120.24200 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00145 * 335.04262 * 17 16 15 19 19 C 1.39950 * 119.99518 * 155.04462 * 17 16 15 20 20 N 1.30820 * 120.00167 * 334.22508 * 19 17 16 21 21 Si 1.86803 * 119.99868 * 154.23167 * 19 17 16 22 22 H 1.48504 * 109.46926 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46706 * 239.99734 * 21 19 17 24 24 H 1.48494 * 109.47046 * 119.99540 * 21 19 17 25 25 C 1.37596 * 119.87783 * 270.28039 * 12 9 8 26 26 C 1.53178 * 109.04112 * 56.98403 * 5 4 2 27 27 C 1.53093 * 109.15674 * 303.01926 * 26 5 4 28 28 O 1.42898 * 109.48823 * 239.97027 * 2 1 3 29 29 H 1.08997 * 109.47251 * 299.97728 * 1 2 3 30 30 H 1.08999 * 109.47283 * 59.98021 * 1 2 3 31 31 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.51911 * 302.47518 * 4 2 1 33 33 H 1.08998 * 109.57149 * 182.32090 * 4 2 1 34 34 H 1.09002 * 109.47366 * 55.00294 * 7 5 4 35 35 H 1.08994 * 109.47207 * 294.99989 * 7 5 4 36 36 H 0.96996 * 120.00440 * 344.99925 * 8 7 5 37 37 H 1.07996 * 119.74722 * 0.02578 * 13 12 9 38 38 H 1.08005 * 119.87821 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.13267 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00040 * 354.24160 * 20 19 17 41 41 H 1.08004 * 120.12382 * 359.96980 * 25 12 9 42 42 H 1.08997 * 109.52380 * 62.91657 * 26 5 4 43 43 H 1.08995 * 109.52680 * 183.11616 * 26 5 4 44 44 H 1.09003 * 109.48192 * 297.61864 * 27 26 5 45 45 H 1.09000 * 109.47959 * 177.59220 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 1.5759 -2.1813 1.2122 6 1 0.4870 -2.2181 1.2424 7 6 2.1469 -2.9313 2.4174 8 7 1.6066 -4.2928 2.4460 9 16 2.3147 -5.4446 3.4023 10 8 3.7103 -5.3786 3.1432 11 8 1.5486 -6.6299 3.2367 12 6 2.0950 -4.9399 5.0761 13 6 0.9690 -5.3439 5.7772 14 6 0.7828 -4.9541 7.0942 15 6 1.7165 -4.1604 7.7211 16 6 2.8635 -3.7453 7.0198 17 6 3.8296 -2.9304 7.6536 18 1 3.5447 -2.3013 8.4839 19 6 5.1552 -2.9390 7.2048 20 7 5.6312 -3.9917 6.5911 21 14 6.2449 -1.4473 7.4823 22 1 5.4737 -0.3964 8.1937 23 1 6.7063 -0.9210 6.1726 24 1 7.4206 -1.8386 8.3006 25 6 3.0385 -4.1415 5.6808 26 6 2.0768 -2.8322 -0.0807 27 6 1.5649 -2.0285 -1.2789 28 8 2.0067 -0.6742 -1.1663 29 1 -0.3633 0.5135 0.8902 30 1 -0.3634 0.5141 -0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6419 -0.2356 2.1399 33 1 3.1297 -0.6872 1.2722 34 1 1.8694 -2.4109 3.3341 35 1 3.2332 -2.9731 2.3380 36 1 0.8342 -4.5196 1.9050 37 1 0.2314 -5.9670 5.2934 38 1 -0.0978 -5.2749 7.6310 39 1 1.5693 -3.8575 8.7472 40 1 5.0940 -4.7963 6.5207 41 1 3.9128 -3.8246 5.1315 42 1 3.1668 -2.8398 -0.0861 43 1 1.7042 -3.8547 -0.1419 44 1 0.4754 -2.0552 -1.2958 45 1 1.9536 -2.4622 -2.2003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:53 Heat of formation + Delta-G solvation = -147.255339 kcal Electronic energy + Delta-G solvation = -28122.276988 eV Core-core repulsion = 24229.441852 eV Total energy + Delta-G solvation = -3892.835136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85663 -39.69661 -38.37261 -37.23370 -36.99269 -35.90416 -33.92938 -32.89298 -32.10908 -31.30681 -29.47397 -27.20751 -26.84074 -24.45571 -23.73047 -23.15196 -22.90941 -20.85289 -20.29408 -19.86474 -18.65704 -17.97708 -17.53256 -17.07450 -16.83580 -16.74693 -16.36239 -16.07961 -15.81656 -15.58983 -15.42076 -15.15867 -14.68094 -14.35862 -14.29475 -14.02697 -13.91142 -13.54022 -13.33194 -13.26626 -13.18529 -13.01677 -13.00089 -12.84352 -12.81306 -12.65381 -12.42670 -12.12548 -11.98003 -11.91169 -11.66551 -11.58973 -11.35992 -10.98634 -10.96860 -10.55736 -10.35419 -10.10433 -9.70190 -9.27853 -6.56711 -0.59191 0.22087 0.76624 1.49089 1.58483 1.76890 2.04742 2.29792 2.48396 2.69717 2.98078 3.33135 3.36016 3.61872 3.75049 3.75929 4.01069 4.17970 4.20379 4.32068 4.36857 4.38508 4.42021 4.47487 4.55061 4.59093 4.65779 4.73781 4.78637 4.81242 4.91124 4.97844 5.00216 5.04430 5.18169 5.18765 5.21083 5.29259 5.41575 5.46969 5.58738 5.67437 5.71215 6.01841 6.07829 6.15543 6.34453 6.61287 6.79994 7.95873 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.004129 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.330456 B = 6779.483137 C = 8167.136747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.110 0.890 4 C -0.148 4.148 5 C -0.086 4.086 6 H 0.102 0.898 7 C 0.119 3.881 8 N -1.098 6.098 9 S 2.712 3.288 10 O -0.996 6.996 11 O -0.987 6.987 12 C -0.632 4.632 13 C -0.163 4.163 14 C -0.097 4.097 15 C -0.196 4.196 16 C 0.050 3.950 17 C -0.549 4.549 18 H 0.081 0.919 19 C 0.002 3.998 20 N -0.814 5.814 21 Si 1.116 2.884 22 H -0.256 1.256 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.139 4.139 26 C -0.156 4.156 27 C 0.057 3.943 28 O -0.398 6.398 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.429 0.571 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.282 0.718 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 7.832 -11.975 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.029 3.971 3 H 0.127 0.873 4 C -0.186 4.186 5 C -0.106 4.106 6 H 0.120 0.880 7 C -0.007 4.007 8 N -0.861 5.861 9 S 2.805 3.195 10 O -0.986 6.986 11 O -0.977 6.977 12 C -0.721 4.721 13 C -0.184 4.184 14 C -0.116 4.116 15 C -0.216 4.216 16 C 0.046 3.954 17 C -0.577 4.577 18 H 0.100 0.900 19 C -0.215 4.215 20 N -0.437 5.437 21 Si 0.933 3.067 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.160 4.160 26 C -0.193 4.193 27 C -0.019 4.019 28 O -0.317 6.317 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.266 0.734 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.942 7.753 -12.633 16.816 hybrid contribution -1.890 -0.891 1.248 2.434 sum -9.832 6.862 -11.385 16.534 Atomic orbital electron populations 1.22438 0.95095 1.03178 1.03369 1.22253 0.94465 0.96429 0.83993 0.87269 1.22245 1.01834 0.94789 0.99766 1.21389 1.01779 0.94544 0.92854 0.88031 1.21451 0.98341 0.80917 1.00001 1.55069 1.47106 1.23714 1.60197 1.00946 0.72590 0.72523 0.73444 1.93533 1.33350 1.86765 1.84918 1.93495 1.72112 1.45438 1.86645 1.30313 1.04251 1.13320 1.24183 1.20465 0.96988 1.04682 0.96274 1.21119 0.98673 0.97014 0.94746 1.21480 0.97769 1.03163 0.99202 1.18112 0.94018 0.91477 0.91745 1.20821 0.95604 1.23757 1.17519 0.90049 1.28521 0.98987 1.03618 0.90354 1.70567 1.40301 1.02877 1.29912 0.83041 0.74151 0.71070 0.78458 1.17947 1.19122 1.19242 1.20856 0.98364 1.01144 0.95610 1.22305 1.01629 1.00532 0.94872 1.22681 0.99633 0.81488 0.98097 1.87962 1.74397 1.25531 1.43851 0.90434 0.91567 0.91550 0.89411 0.91794 0.91577 0.91976 0.73387 0.84905 0.84341 0.87007 0.90590 0.87884 0.92303 0.89763 0.91264 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.65 71.98 0.62 -1.79 16 2 C 0.09 1.45 3.91 30.63 0.12 1.57 16 3 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.15 -2.81 4.92 30.68 0.15 -2.66 16 5 C -0.09 -1.69 1.99 -10.68 -0.02 -1.71 16 6 H 0.10 1.61 6.62 -2.39 -0.02 1.59 16 7 C 0.12 3.21 5.62 86.38 0.49 3.70 16 8 N -1.10 -30.25 5.58 -187.47 -1.05 -31.29 16 9 S 2.71 104.12 5.73 -56.49 -0.32 103.80 16 10 O -1.00 -45.80 16.74 -128.00 -2.14 -47.95 16 11 O -0.99 -39.55 17.27 -128.00 -2.21 -41.76 16 12 C -0.63 -27.84 5.94 22.22 0.13 -27.70 16 13 C -0.16 -6.69 9.53 22.46 0.21 -6.48 16 14 C -0.10 -3.89 10.02 22.22 0.22 -3.67 16 15 C -0.20 -8.99 9.80 22.73 0.22 -8.77 16 16 C 0.05 2.58 5.30 -21.29 -0.11 2.47 16 17 C -0.55 -28.52 8.98 23.46 0.21 -28.31 16 18 H 0.08 4.05 7.96 -2.91 -0.02 4.03 16 19 C 0.00 0.09 4.93 85.26 0.42 0.51 16 20 N -0.81 -44.96 12.32 21.83 0.27 -44.69 16 21 Si 1.12 42.35 30.00 68.60 2.06 44.41 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 23 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 25 C -0.14 -6.99 7.43 22.73 0.17 -6.83 16 26 C -0.16 -3.01 5.27 30.68 0.16 -2.85 16 27 C 0.06 0.96 6.51 72.01 0.47 1.43 16 28 O -0.40 -8.20 10.60 -148.98 -1.58 -9.77 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.83 4.98 -2.39 -0.01 0.82 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.94 7.75 -2.39 -0.02 1.92 16 36 H 0.43 8.80 8.42 -96.75 -0.81 7.98 16 37 H 0.13 4.73 7.60 -2.91 -0.02 4.71 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.28 16.39 6.71 -92.71 -0.62 15.77 16 41 H 0.10 5.56 6.04 -2.91 -0.02 5.54 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 44 H 0.07 0.93 6.34 -2.39 -0.02 0.91 16 45 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -68.73 369.73 -1.17 -69.90 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.34 Total: 38.44 kcal Atomic # 6 Polarization: -84.55 SS G_CDS: 3.47 Total: -81.09 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -0.78 Total: -75.98 kcal Atomic # 8 Polarization: -93.55 SS G_CDS: -5.93 Total: -99.49 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.06 Total: 44.41 kcal Atomic # 16 Polarization: 104.12 SS G_CDS: -0.32 Total: 103.80 kcal Total: -68.73 -1.17 -69.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.358 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds