Wall clock time and date at job start Tue Mar 31 2020 23:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48307 * 2 1 4 4 C 1.53100 * 109.47776 * 239.98117 * 2 1 3 5 5 C 1.53182 * 109.16120 * 182.39400 * 4 2 1 6 6 H 1.08998 * 109.54626 * 297.02585 * 5 4 2 7 7 C 1.53001 * 109.54183 * 176.84879 * 5 4 2 8 8 N 1.46497 * 109.46930 * 175.00238 * 7 5 4 9 9 S 1.65606 * 119.99816 * 164.99989 * 8 7 5 10 10 O 1.42099 * 106.40111 * 311.46004 * 9 8 7 11 11 O 1.42095 * 106.40032 * 178.53761 * 9 8 7 12 12 C 1.76196 * 107.21814 * 64.99678 * 9 8 7 13 13 C 1.38658 * 119.87471 * 89.99724 * 12 9 8 14 14 C 1.38611 * 120.50301 * 180.02562 * 13 12 9 15 15 C 1.37640 * 120.24775 * 0.02562 * 14 13 12 16 16 C 1.40693 * 119.74757 * 359.97438 * 15 14 13 17 17 C 1.41395 * 120.24974 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00332 * 206.62190 * 17 16 15 19 19 C 1.39947 * 119.99626 * 26.62371 * 17 16 15 20 20 N 1.30829 * 120.00084 * 25.18239 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 205.18009 * 19 17 16 22 22 H 1.48509 * 109.46798 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47046 * 299.99736 * 21 19 17 24 24 H 1.48500 * 109.47101 * 60.00014 * 21 19 17 25 25 C 1.37599 * 119.88083 * 270.26138 * 12 9 8 26 26 C 1.53180 * 109.03533 * 56.98280 * 5 4 2 27 27 C 1.53086 * 109.16121 * 303.01899 * 26 5 4 28 28 O 1.42899 * 109.49168 * 120.03536 * 2 1 3 29 29 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46709 * 300.01728 * 1 2 3 31 31 H 1.09001 * 109.47455 * 60.01688 * 1 2 3 32 32 H 1.09006 * 109.51918 * 62.49289 * 4 2 1 33 33 H 1.08994 * 109.52287 * 302.30072 * 4 2 1 34 34 H 1.08999 * 109.46794 * 54.99741 * 7 5 4 35 35 H 1.09000 * 109.46989 * 295.00285 * 7 5 4 36 36 H 0.96994 * 120.00190 * 344.99944 * 8 7 5 37 37 H 1.07997 * 119.74966 * 0.02562 * 13 12 9 38 38 H 1.08000 * 119.87990 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.12840 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99752 * 5.83291 * 20 19 17 41 41 H 1.08001 * 120.12371 * 359.97438 * 25 12 9 42 42 H 1.09002 * 109.52088 * 62.92389 * 26 5 4 43 43 H 1.08999 * 109.52090 * 183.11105 * 26 5 4 44 44 H 1.09007 * 109.48240 * 297.62400 * 27 26 5 45 45 H 1.09010 * 109.49166 * 177.59957 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2498 5 6 3.5711 -0.7704 -1.2126 6 1 3.9688 0.2440 -1.2428 7 6 4.0877 -1.5588 -2.4178 8 7 5.5513 -1.5032 -2.4466 9 16 6.4011 -2.5547 -3.4030 10 8 5.8738 -3.8485 -3.1439 11 8 7.7740 -2.2275 -3.2376 12 6 5.9983 -2.1794 -5.0767 13 6 6.7544 -1.2525 -5.7779 14 6 6.4487 -0.9470 -7.0950 15 6 5.3885 -1.5619 -7.7213 16 6 4.6143 -2.5041 -7.0197 17 6 3.5225 -3.1418 -7.6525 18 1 2.6948 -3.5073 -7.0629 19 6 3.5144 -3.2994 -9.0431 20 7 4.6428 -3.3314 -9.7043 21 14 1.8925 -3.4640 -9.9550 22 1 2.1553 -3.6178 -11.4085 23 1 1.1622 -4.6563 -9.4547 24 1 1.0707 -2.2484 -9.7269 25 6 4.9312 -2.8032 -5.6814 26 6 4.0179 -1.4597 0.0804 27 6 3.4310 -0.7092 1.2786 28 8 2.0068 -0.6743 1.1662 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5136 -0.8901 32 1 1.7146 -0.1840 -2.1400 33 1 1.6444 -1.7373 -1.2712 34 1 3.6893 -1.1236 -3.3343 35 1 3.7649 -2.5969 -2.3383 36 1 6.0226 -0.8506 -1.9056 37 1 7.5878 -0.7648 -5.2943 38 1 7.0442 -0.2231 -7.6315 39 1 5.1518 -1.3221 -8.7474 40 1 5.4861 -3.3311 -9.2249 41 1 4.3412 -3.5220 -5.1322 42 1 3.6617 -2.4899 0.0857 43 1 5.1061 -1.4492 0.1414 44 1 3.8194 0.3092 1.2954 45 1 3.7105 -1.2200 2.2001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:06 Heat of formation + Delta-G solvation = -131.281395 kcal Electronic energy + Delta-G solvation = -27551.586226 eV Core-core repulsion = 23659.443772 eV Total energy + Delta-G solvation = -3892.142454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.84094 -37.90867 -36.81148 -36.21148 -35.39318 -34.10090 -33.13644 -32.54470 -30.12943 -29.72014 -28.40306 -25.89870 -25.33095 -23.57539 -21.97731 -21.69280 -21.24567 -20.45417 -19.18195 -18.32784 -17.16149 -16.58375 -16.35262 -16.11394 -15.80163 -15.26838 -14.97209 -14.71246 -14.65832 -14.27604 -14.03404 -13.90982 -13.46053 -13.06130 -12.82589 -12.66899 -12.60653 -12.47819 -12.21646 -12.10946 -11.69017 -11.61530 -11.60152 -11.52490 -11.38179 -11.33813 -11.10511 -11.09049 -10.83272 -10.72884 -10.50009 -10.46686 -9.89651 -9.72014 -9.67437 -9.28713 -9.14296 -8.29094 -7.91451 -7.36881 -4.65255 0.91298 1.99219 2.54108 3.07086 3.12430 3.27067 3.45772 3.55520 3.90180 4.12483 4.33883 4.39309 4.48005 4.59696 4.71306 4.88892 4.96647 5.03276 5.15618 5.16007 5.25134 5.32009 5.41315 5.46140 5.47368 5.63618 5.69621 5.76217 5.82787 5.86618 5.89294 5.97305 6.02023 6.06330 6.20920 6.41544 6.51402 6.69276 6.98568 7.03243 7.10471 7.21525 7.44131 7.50665 7.59754 7.86707 7.97976 8.47148 8.64472 9.88351 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003438 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.203330 B = 8141.364666 C = 9998.314533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.147 4.147 5 C -0.094 4.094 6 H 0.078 0.922 7 C 0.124 3.876 8 N -1.120 6.120 9 S 2.690 3.310 10 O -0.969 6.969 11 O -0.975 6.975 12 C -0.621 4.621 13 C -0.162 4.162 14 C -0.100 4.100 15 C -0.176 4.176 16 C 0.079 3.921 17 C -0.520 4.520 18 H 0.081 0.919 19 C 0.038 3.962 20 N -0.793 5.793 21 Si 1.066 2.934 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.126 4.126 26 C -0.154 4.154 27 C 0.063 3.937 28 O -0.382 6.382 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.299 0.701 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 7.495 14.822 17.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.075 0.925 4 C -0.185 4.185 5 C -0.114 4.114 6 H 0.097 0.903 7 C -0.002 4.002 8 N -0.878 5.878 9 S 2.785 3.215 10 O -0.959 6.959 11 O -0.965 6.965 12 C -0.713 4.713 13 C -0.183 4.183 14 C -0.119 4.119 15 C -0.195 4.195 16 C 0.075 3.925 17 C -0.547 4.547 18 H 0.099 0.901 19 C -0.184 4.184 20 N -0.416 5.416 21 Si 0.889 3.111 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.147 4.147 26 C -0.192 4.192 27 C -0.014 4.014 28 O -0.301 6.301 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.245 0.755 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.621 6.454 13.620 16.086 hybrid contribution 0.934 0.951 0.841 1.576 sum -4.687 7.405 14.462 16.910 Atomic orbital electron populations 1.21773 0.93035 1.03095 1.02374 1.22077 0.95068 0.94862 0.85023 0.92538 1.22270 0.94737 1.02746 0.98752 1.21392 0.95720 0.99823 0.94433 0.90329 1.21315 0.78888 1.01576 0.98464 1.55549 1.15694 1.55144 1.61460 1.01662 0.72529 0.73109 0.74179 1.93535 1.80235 1.37209 1.84964 1.93525 1.31801 1.84496 1.86718 1.29846 1.08294 1.11075 1.22063 1.20020 1.01001 1.01621 0.95689 1.20737 0.97387 0.99260 0.94543 1.21439 0.98663 0.98875 1.00565 1.17736 0.92162 0.90968 0.91667 1.20594 1.04680 1.34698 0.94766 0.90126 1.27093 1.04373 0.91453 0.95466 1.70483 1.00538 1.28720 1.41836 0.83616 0.72982 0.78061 0.76417 1.19740 1.19907 1.19892 1.20756 0.96478 1.00110 0.97346 1.22292 1.01509 1.00941 0.94426 1.22563 0.80998 0.99441 0.98419 1.87925 1.21037 1.78064 1.43107 0.91673 0.91998 0.90947 0.90214 0.90337 0.91052 0.90100 0.75468 0.87429 0.88195 0.87086 0.88778 0.86930 0.90440 0.90540 0.93349 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.56 37.16 0.36 -0.78 16 2 C 0.09 0.79 3.26 -26.68 -0.09 0.70 16 3 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -1.37 4.71 -26.59 -0.13 -1.49 16 5 C -0.09 -0.92 2.30 -90.43 -0.21 -1.13 16 6 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 7 C 0.12 1.54 5.62 -4.04 -0.02 1.52 16 8 N -1.12 -14.96 5.58 -10.61 -0.06 -15.02 16 9 S 2.69 48.88 5.73 -107.50 -0.62 48.26 16 10 O -0.97 -20.04 16.74 -57.17 -0.96 -21.00 16 11 O -0.97 -19.47 17.27 -57.17 -0.99 -20.46 16 12 C -0.62 -13.21 5.94 -39.66 -0.24 -13.45 16 13 C -0.16 -3.46 9.53 -39.29 -0.37 -3.83 16 14 C -0.10 -2.19 10.02 -39.66 -0.40 -2.58 16 15 C -0.18 -4.25 7.96 -38.87 -0.31 -4.56 16 16 C 0.08 1.98 5.27 -106.83 -0.56 1.41 16 17 C -0.52 -13.12 8.98 -37.74 -0.34 -13.46 16 18 H 0.08 1.96 7.96 -52.49 -0.42 1.54 16 19 C 0.04 0.93 4.93 -17.34 -0.09 0.84 16 20 N -0.79 -20.34 12.35 55.55 0.69 -19.65 16 21 Si 1.07 20.52 30.00 -169.99 -5.10 15.42 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 25 C -0.13 -2.93 9.26 -38.87 -0.36 -3.29 16 26 C -0.15 -1.46 5.27 -26.59 -0.14 -1.60 16 27 C 0.06 0.55 6.84 37.20 0.25 0.80 16 28 O -0.38 -4.05 10.41 -35.23 -0.37 -4.42 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 36 H 0.41 4.40 8.42 -34.47 -0.29 4.11 16 37 H 0.11 2.08 7.60 -52.49 -0.40 1.68 16 38 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.11 2.73 6.58 -52.48 -0.35 2.39 16 40 H 0.30 7.88 6.73 -40.82 -0.27 7.61 16 41 H 0.11 2.53 7.61 -52.49 -0.40 2.13 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -30.89 376.81 -11.16 -42.04 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.80 Total: 10.03 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: -2.64 Total: -40.89 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.63 Total: -34.67 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -2.31 Total: -45.87 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.10 Total: 15.42 kcal Atomic # 16 Polarization: 48.88 SS G_CDS: -0.62 Total: 48.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.89 -11.16 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.240 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds