Wall clock time and date at job start Tue Mar 31 2020 23:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.48307 * 2 1 4 4 C 1.53100 * 109.47776 * 239.98117 * 2 1 3 5 5 C 1.53182 * 109.16120 * 182.39400 * 4 2 1 6 6 H 1.08998 * 109.54626 * 297.02585 * 5 4 2 7 7 C 1.53001 * 109.54183 * 176.84879 * 5 4 2 8 8 N 1.46497 * 109.46930 * 175.00238 * 7 5 4 9 9 S 1.65606 * 119.99816 * 164.99989 * 8 7 5 10 10 O 1.42099 * 106.40111 * 311.46004 * 9 8 7 11 11 O 1.42095 * 106.40032 * 178.53761 * 9 8 7 12 12 C 1.76196 * 107.21814 * 64.99678 * 9 8 7 13 13 C 1.38658 * 119.87471 * 89.99724 * 12 9 8 14 14 C 1.38611 * 120.50301 * 180.02562 * 13 12 9 15 15 C 1.37640 * 120.24775 * 0.02562 * 14 13 12 16 16 C 1.40693 * 119.74757 * 359.97438 * 15 14 13 17 17 C 1.41395 * 120.24974 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00332 * 206.62190 * 17 16 15 19 19 C 1.39947 * 119.99626 * 26.62371 * 17 16 15 20 20 N 1.30829 * 120.00084 * 25.18239 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 205.18009 * 19 17 16 22 22 H 1.48509 * 109.46798 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47046 * 299.99736 * 21 19 17 24 24 H 1.48500 * 109.47101 * 60.00014 * 21 19 17 25 25 C 1.37599 * 119.88083 * 270.26138 * 12 9 8 26 26 C 1.53180 * 109.03533 * 56.98280 * 5 4 2 27 27 C 1.53086 * 109.16121 * 303.01899 * 26 5 4 28 28 O 1.42899 * 109.49168 * 120.03536 * 2 1 3 29 29 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46709 * 300.01728 * 1 2 3 31 31 H 1.09001 * 109.47455 * 60.01688 * 1 2 3 32 32 H 1.09006 * 109.51918 * 62.49289 * 4 2 1 33 33 H 1.08994 * 109.52287 * 302.30072 * 4 2 1 34 34 H 1.08999 * 109.46794 * 54.99741 * 7 5 4 35 35 H 1.09000 * 109.46989 * 295.00285 * 7 5 4 36 36 H 0.96994 * 120.00190 * 344.99944 * 8 7 5 37 37 H 1.07997 * 119.74966 * 0.02562 * 13 12 9 38 38 H 1.08000 * 119.87990 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.12840 * 179.97438 * 15 14 13 40 40 H 0.97003 * 119.99752 * 5.83291 * 20 19 17 41 41 H 1.08001 * 120.12371 * 359.97438 * 25 12 9 42 42 H 1.09002 * 109.52088 * 62.92389 * 26 5 4 43 43 H 1.08999 * 109.52090 * 183.11105 * 26 5 4 44 44 H 1.09007 * 109.48240 * 297.62400 * 27 26 5 45 45 H 1.09010 * 109.49166 * 177.59957 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2498 5 6 3.5711 -0.7704 -1.2126 6 1 3.9688 0.2440 -1.2428 7 6 4.0877 -1.5588 -2.4178 8 7 5.5513 -1.5032 -2.4466 9 16 6.4011 -2.5547 -3.4030 10 8 5.8738 -3.8485 -3.1439 11 8 7.7740 -2.2275 -3.2376 12 6 5.9983 -2.1794 -5.0767 13 6 6.7544 -1.2525 -5.7779 14 6 6.4487 -0.9470 -7.0950 15 6 5.3885 -1.5619 -7.7213 16 6 4.6143 -2.5041 -7.0197 17 6 3.5225 -3.1418 -7.6525 18 1 2.6948 -3.5073 -7.0629 19 6 3.5144 -3.2994 -9.0431 20 7 4.6428 -3.3314 -9.7043 21 14 1.8925 -3.4640 -9.9550 22 1 2.1553 -3.6178 -11.4085 23 1 1.1622 -4.6563 -9.4547 24 1 1.0707 -2.2484 -9.7269 25 6 4.9312 -2.8032 -5.6814 26 6 4.0179 -1.4597 0.0804 27 6 3.4310 -0.7092 1.2786 28 8 2.0068 -0.6743 1.1662 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5136 -0.8901 32 1 1.7146 -0.1840 -2.1400 33 1 1.6444 -1.7373 -1.2712 34 1 3.6893 -1.1236 -3.3343 35 1 3.7649 -2.5969 -2.3383 36 1 6.0226 -0.8506 -1.9056 37 1 7.5878 -0.7648 -5.2943 38 1 7.0442 -0.2231 -7.6315 39 1 5.1518 -1.3221 -8.7474 40 1 5.4861 -3.3311 -9.2249 41 1 4.3412 -3.5220 -5.1322 42 1 3.6617 -2.4899 0.0857 43 1 5.1061 -1.4492 0.1414 44 1 3.8194 0.3092 1.2954 45 1 3.7105 -1.2200 2.2001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:05 Heat of formation + Delta-G solvation = -151.239963 kcal Electronic energy + Delta-G solvation = -27552.451695 eV Core-core repulsion = 23659.443772 eV Total energy + Delta-G solvation = -3893.007923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58902 -39.71017 -38.36207 -37.22540 -36.98427 -35.92068 -33.92289 -33.39792 -31.92633 -31.52853 -29.15697 -27.19658 -26.77806 -24.34029 -23.72610 -23.07172 -22.43274 -21.29918 -20.69379 -19.94690 -18.57617 -17.98093 -17.46076 -17.15661 -16.80317 -16.69013 -16.28931 -16.02205 -15.76902 -15.58309 -15.46158 -15.16076 -14.86543 -14.45329 -14.10127 -13.93908 -13.70444 -13.42935 -13.36704 -13.26521 -13.17990 -13.12027 -13.09071 -12.92287 -12.74995 -12.67221 -12.41984 -12.03332 -11.98698 -11.91101 -11.66259 -11.50817 -11.45725 -11.18663 -10.97759 -10.55398 -10.34462 -10.08331 -9.76971 -9.26599 -6.58164 -0.58766 0.21418 0.73599 1.50090 1.58086 1.78632 2.05161 2.30269 2.47802 2.71136 2.89690 3.29908 3.37047 3.62208 3.72054 3.81051 4.00992 4.15292 4.26396 4.32179 4.33081 4.35127 4.41230 4.55247 4.60043 4.62361 4.68339 4.73835 4.77413 4.83436 4.91257 4.93264 4.99206 5.07600 5.12506 5.17459 5.20563 5.33902 5.40488 5.42261 5.56136 5.67797 5.70011 6.00152 6.08990 6.13664 6.35764 6.60714 6.78600 7.95877 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003438 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.203330 B = 8141.364666 C = 9998.314533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.087 4.087 6 H 0.097 0.903 7 C 0.119 3.881 8 N -1.098 6.098 9 S 2.721 3.279 10 O -0.993 6.993 11 O -0.987 6.987 12 C -0.629 4.629 13 C -0.158 4.158 14 C -0.103 4.103 15 C -0.191 4.191 16 C 0.053 3.947 17 C -0.554 4.554 18 H 0.079 0.921 19 C 0.005 3.995 20 N -0.817 5.817 21 Si 1.116 2.884 22 H -0.272 1.272 23 H -0.258 1.258 24 H -0.259 1.259 25 C -0.141 4.141 26 C -0.155 4.155 27 C 0.061 3.939 28 O -0.402 6.402 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.429 0.571 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.282 0.718 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 9.100 16.186 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.185 4.185 5 C -0.107 4.107 6 H 0.115 0.885 7 C -0.007 4.007 8 N -0.862 5.862 9 S 2.812 3.188 10 O -0.983 6.983 11 O -0.977 6.977 12 C -0.717 4.717 13 C -0.179 4.179 14 C -0.122 4.122 15 C -0.211 4.211 16 C 0.049 3.951 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.211 4.211 20 N -0.440 5.440 21 Si 0.933 3.067 22 H -0.197 1.197 23 H -0.183 1.183 24 H -0.184 1.184 25 C -0.162 4.162 26 C -0.193 4.193 27 C -0.015 4.015 28 O -0.322 6.322 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.266 0.734 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.748 8.077 14.978 17.962 hybrid contribution 1.084 0.515 0.596 1.340 sum -4.664 8.592 15.574 18.388 Atomic orbital electron populations 1.21793 0.92408 1.02824 1.03213 1.22184 0.95675 0.95144 0.84217 0.91345 1.22278 0.94355 1.02373 0.99507 1.21371 0.95984 1.00200 0.93137 0.88505 1.21463 0.77887 1.01583 0.99805 1.55090 1.16089 1.54904 1.60100 1.00765 0.72039 0.72909 0.73044 1.93509 1.80692 1.39285 1.84844 1.93502 1.32945 1.84750 1.86523 1.30376 1.07036 1.10044 1.24277 1.20457 1.01076 1.00852 0.95469 1.21096 0.96762 0.99280 0.95054 1.21458 0.99824 0.99573 1.00230 1.18070 0.92715 0.91527 0.92762 1.20815 1.05295 1.36430 0.95706 0.90275 1.28478 1.06657 0.89836 0.96148 1.70604 1.00433 1.31359 1.41554 0.83016 0.69396 0.79161 0.75137 1.19702 1.18253 1.18359 1.20820 0.97555 1.00807 0.96996 1.22309 1.02085 1.00220 0.94687 1.22672 0.80200 1.00315 0.98356 1.87909 1.22085 1.78437 1.43727 0.92512 0.91627 0.89657 0.89487 0.91498 0.91459 0.91209 0.73374 0.84751 0.85186 0.88324 0.90554 0.87051 0.91961 0.89635 0.91794 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.56 71.98 0.69 -1.36 16 2 C 0.09 1.38 3.26 30.63 0.10 1.48 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.15 -2.52 4.71 30.69 0.14 -2.38 16 5 C -0.09 -1.52 2.30 -10.67 -0.02 -1.55 16 6 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 7 C 0.12 2.80 5.62 86.38 0.49 3.28 16 8 N -1.10 -27.03 5.58 -187.49 -1.05 -28.07 16 9 S 2.72 95.00 5.73 -56.49 -0.32 94.68 16 10 O -0.99 -40.52 16.74 -128.00 -2.14 -42.67 16 11 O -0.99 -37.17 17.27 -128.00 -2.21 -39.38 16 12 C -0.63 -26.28 5.94 22.22 0.13 -26.15 16 13 C -0.16 -6.46 9.53 22.46 0.21 -6.24 16 14 C -0.10 -4.41 10.02 22.22 0.22 -4.18 16 15 C -0.19 -9.40 7.96 22.73 0.18 -9.22 16 16 C 0.05 2.73 5.27 -21.29 -0.11 2.61 16 17 C -0.55 -28.91 8.98 23.46 0.21 -28.70 16 18 H 0.08 3.98 7.96 -2.91 -0.02 3.96 16 19 C 0.00 0.24 4.93 85.26 0.42 0.66 16 20 N -0.82 -43.19 12.35 21.83 0.27 -42.92 16 21 Si 1.12 41.48 30.00 68.60 2.06 43.54 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 25 C -0.14 -6.68 9.26 22.73 0.21 -6.47 16 26 C -0.16 -2.65 5.27 30.68 0.16 -2.49 16 27 C 0.06 0.93 6.84 72.01 0.49 1.42 16 28 O -0.40 -7.85 10.41 -148.98 -1.55 -9.40 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.83 7.75 -2.39 -0.02 1.81 16 36 H 0.43 7.81 8.42 -96.75 -0.81 7.00 16 37 H 0.13 4.76 7.60 -2.91 -0.02 4.74 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.10 5.02 6.58 -2.91 -0.02 5.00 16 40 H 0.28 15.57 6.73 -92.71 -0.62 14.95 16 41 H 0.11 5.16 7.61 -2.91 -0.02 5.14 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.29 7.67 -2.39 -0.02 1.27 16 44 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -67.06 376.81 -1.10 -68.16 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.32 Total: 35.35 kcal Atomic # 6 Polarization: -82.82 SS G_CDS: 3.53 Total: -79.29 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.78 Total: -70.99 kcal Atomic # 8 Polarization: -85.54 SS G_CDS: -5.90 Total: -91.44 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.06 Total: 43.54 kcal Atomic # 16 Polarization: 95.00 SS G_CDS: -0.32 Total: 94.68 kcal Total: -67.06 -1.10 -68.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.081 kcal (2) G-P(sol) polarization free energy of solvation -67.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds