Wall clock time and date at job start Tue Mar 31 2020 23:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.67916 * 2 1 4 4 C 1.53292 * 109.67815 * 120.55860 * 2 1 3 5 5 O 1.42968 * 109.22140 * 172.02355 * 4 2 1 6 6 C 1.42962 * 114.16624 * 297.41360 * 5 4 2 7 7 C 1.52995 * 109.51202 * 182.50473 * 6 5 4 8 8 C 1.52996 * 109.51309 * 302.60686 * 6 5 4 9 9 C 1.53304 * 109.21873 * 62.58233 * 6 5 4 10 10 N 1.47150 * 108.38553 * 307.69424 * 9 6 5 11 11 S 1.65588 * 120.98389 * 230.80836 * 10 9 6 12 12 O 1.42101 * 106.40258 * 16.11701 * 11 10 9 13 13 O 1.42101 * 106.40610 * 149.02995 * 11 10 9 14 14 C 1.76200 * 107.22237 * 262.57208 * 11 10 9 15 15 C 1.38659 * 119.87393 * 89.99875 * 14 11 10 16 16 C 1.38609 * 120.50177 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.24927 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.74114 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.24013 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99547 * 151.16631 * 19 18 17 21 21 C 1.39938 * 120.00120 * 331.17386 * 19 18 17 22 22 N 1.30821 * 120.00475 * 349.32761 * 21 19 18 23 23 Si 1.86807 * 119.99628 * 169.32684 * 21 19 18 24 24 H 1.48494 * 109.47302 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47102 * 119.99998 * 23 21 19 26 26 H 1.48500 * 109.46763 * 239.99750 * 23 21 19 27 27 C 1.37587 * 119.87753 * 269.72577 * 14 11 10 28 28 H 1.09003 * 109.47863 * 186.45860 * 1 2 3 29 29 H 1.08998 * 109.46986 * 306.46208 * 1 2 3 30 30 H 1.08998 * 109.47164 * 66.45756 * 1 2 3 31 31 H 1.09005 * 109.51206 * 291.94609 * 4 2 1 32 32 H 1.09000 * 109.51594 * 52.09901 * 4 2 1 33 33 H 1.08997 * 109.47137 * 60.00191 * 7 6 5 34 34 H 1.08999 * 109.47065 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47371 * 300.00066 * 7 6 5 36 36 H 1.09001 * 109.47259 * 59.99946 * 8 6 5 37 37 H 1.09002 * 109.46944 * 179.97438 * 8 6 5 38 38 H 1.08991 * 109.47603 * 299.99831 * 8 6 5 39 39 H 1.09002 * 109.67656 * 187.96950 * 9 6 5 40 40 H 1.08999 * 109.67997 * 67.41906 * 9 6 5 41 41 H 1.08001 * 119.74945 * 0.02562 * 15 14 11 42 42 H 1.07996 * 119.87556 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.12865 * 180.02562 * 17 16 15 44 44 H 0.96994 * 120.00457 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.12827 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0462 -0.7339 1.2429 5 8 3.4635 -0.8916 1.1417 6 6 3.8859 -1.6897 0.0333 7 6 5.4081 -1.8400 0.0624 8 6 3.2342 -3.0712 0.1206 9 6 3.4638 -1.0048 -1.2717 10 7 2.0255 -0.7037 -1.1937 11 16 0.9941 -1.1495 -2.4100 12 8 1.6873 -2.1133 -3.1909 13 8 -0.2626 -1.4040 -1.7974 14 6 0.7673 0.2590 -3.4441 15 6 1.6164 0.4699 -4.5198 16 6 1.4495 1.5732 -5.3420 17 6 0.4363 2.4725 -5.0986 18 6 -0.4313 2.2686 -4.0099 19 6 -1.4754 3.1860 -3.7497 20 1 -2.3823 2.8498 -3.2691 21 6 -1.3336 4.5294 -4.1151 22 7 -0.1692 4.9826 -4.5026 23 14 -2.8072 5.6756 -4.0495 24 1 -3.9991 4.9232 -3.5823 25 1 -2.5256 6.7907 -3.1101 26 1 -3.0684 6.2239 -5.4046 27 6 -0.2551 1.1424 -3.1845 28 1 -0.3635 -1.0211 0.1156 29 1 -0.3633 0.6107 0.8265 30 1 -0.3633 0.4105 -0.9421 31 1 1.8072 -0.1533 2.1340 32 1 1.5745 -1.7143 1.3090 33 1 5.7078 -2.3229 0.9925 34 1 5.7294 -2.4482 -0.7831 35 1 5.8718 -0.8556 -0.0016 36 1 2.1498 -2.9635 0.0980 37 1 3.5563 -3.6790 -0.7250 38 1 3.5319 -3.5553 1.0507 39 1 3.6545 -1.6702 -2.1137 40 1 4.0261 -0.0799 -1.3993 41 1 2.4133 -0.2312 -4.7190 42 1 2.1164 1.7275 -6.1773 43 1 0.3078 3.3313 -5.7407 44 1 -0.0708 5.9138 -4.7554 45 1 -0.9183 0.9736 -2.3490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:58 Heat of formation + Delta-G solvation = -86.148593 kcal Electronic energy + Delta-G solvation = -29113.645608 eV Core-core repulsion = 25223.460259 eV Total energy + Delta-G solvation = -3890.185349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.96325 -37.71220 -37.10517 -35.49404 -35.09829 -33.91773 -33.83276 -30.45597 -30.07510 -29.84936 -27.68574 -26.05970 -25.51519 -25.36446 -22.22470 -21.87760 -21.06212 -19.74165 -18.67441 -17.84144 -16.96347 -16.62418 -16.08882 -15.86660 -15.30114 -15.17686 -14.79584 -14.73859 -14.57395 -14.29454 -13.61679 -13.48712 -13.41340 -12.94762 -12.64232 -12.48206 -12.20968 -12.08015 -12.00635 -11.92493 -11.86760 -11.62169 -11.54370 -11.46422 -11.41760 -11.37854 -11.02802 -11.00333 -10.83269 -10.69168 -10.61266 -10.20819 -9.85832 -9.76102 -9.48097 -9.43031 -8.61579 -8.05064 -7.69054 -6.89264 -4.58320 0.91561 2.15168 2.59138 2.99762 3.02384 3.05341 3.35837 3.66616 3.82576 4.21588 4.41078 4.56009 4.70793 4.76448 4.87969 4.98731 5.03986 5.21998 5.33157 5.40148 5.47336 5.53535 5.59833 5.64057 5.69251 5.75340 5.83321 5.86863 5.93973 6.00997 6.06695 6.13806 6.24026 6.29094 6.54722 6.62932 6.73365 6.80511 6.90370 7.04231 7.17510 7.18912 7.32585 7.68404 7.79255 7.91281 8.38025 8.65557 8.69278 10.05812 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.003746 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.440348 B = 7473.486601 C = 7873.057542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.122 3.878 3 H 0.083 0.917 4 C 0.053 3.947 5 O -0.371 6.371 6 C 0.102 3.898 7 C -0.137 4.137 8 C -0.181 4.181 9 C 0.097 3.903 10 N -0.997 5.997 11 S 2.684 3.316 12 O -0.976 6.976 13 O -0.965 6.965 14 C -0.635 4.635 15 C -0.142 4.142 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.092 3.908 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.803 5.803 23 Si 0.914 3.086 24 H -0.259 1.259 25 H -0.273 1.273 26 H -0.272 1.272 27 C -0.126 4.126 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.282 0.718 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -7.764 8.334 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.016 3.984 3 H 0.101 0.899 4 C -0.025 4.025 5 O -0.290 6.290 6 C 0.061 3.939 7 C -0.194 4.194 8 C -0.238 4.238 9 C -0.029 4.029 10 N -0.835 5.835 11 S 2.783 3.217 12 O -0.966 6.966 13 O -0.956 6.956 14 C -0.727 4.727 15 C -0.163 4.163 16 C -0.143 4.143 17 C -0.129 4.129 18 C 0.088 3.912 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.144 4.144 22 N -0.429 5.429 23 Si 0.738 3.262 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.147 4.147 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.729 -8.317 8.295 13.538 hybrid contribution -0.639 1.453 -0.501 1.665 sum 6.090 -6.863 7.794 12.039 Atomic orbital electron populations 1.22807 0.91923 1.05201 1.04566 1.21677 0.95531 0.96567 0.84628 0.89879 1.23043 0.81663 1.00211 0.97563 1.87954 1.21903 1.71459 1.47669 1.21799 0.95364 0.90206 0.86525 1.21728 0.91943 1.02942 1.02810 1.22421 1.01767 0.96681 1.02935 1.22129 0.80719 1.01248 0.98833 1.57892 1.18443 1.74113 1.33031 1.01905 0.72791 0.74592 0.72370 1.93471 1.74668 1.58821 1.69661 1.93616 1.41588 1.85112 1.75242 1.29807 1.07836 1.20991 1.14077 1.20094 0.99939 0.99075 0.97182 1.20842 0.98990 0.95352 0.99110 1.21715 0.95739 0.98498 0.96995 1.17709 0.92591 0.91019 0.89871 1.19634 1.02078 0.92530 1.34910 0.89959 1.25906 0.96797 0.99207 0.92476 1.69741 1.23393 1.16761 1.33012 0.86161 0.81604 0.79628 0.78809 1.18289 1.19845 1.19685 1.20925 0.97169 0.96710 0.99902 0.89023 0.91435 0.89642 0.87917 0.92208 0.91540 0.90732 0.91483 0.92045 0.90977 0.91610 0.87906 0.90534 0.87695 0.88285 0.85483 0.90714 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 7.56 37.16 0.28 -2.53 16 2 C 0.12 1.75 3.71 -67.42 -0.25 1.50 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.05 0.65 5.90 37.31 0.22 0.87 16 5 O -0.37 -4.82 10.23 -35.23 -0.36 -5.18 16 6 C 0.10 1.22 1.11 -90.47 -0.10 1.12 16 7 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 8 C -0.18 -2.06 8.09 37.16 0.30 -1.76 16 9 C 0.10 1.32 5.40 -3.53 -0.02 1.30 16 10 N -1.00 -15.69 2.86 -106.02 -0.30 -15.99 16 11 S 2.68 50.87 5.31 -107.50 -0.57 50.30 16 12 O -0.98 -19.69 15.74 -57.17 -0.90 -20.59 16 13 O -0.97 -19.21 12.53 -57.17 -0.72 -19.93 16 14 C -0.64 -13.92 5.96 -39.66 -0.24 -14.16 16 15 C -0.14 -3.10 9.53 -39.29 -0.37 -3.48 16 16 C -0.12 -2.78 10.02 -39.66 -0.40 -3.17 16 17 C -0.11 -2.72 8.66 -38.87 -0.34 -3.06 16 18 C 0.09 2.34 5.55 -106.82 -0.59 1.75 16 19 C -0.46 -11.71 9.06 -37.74 -0.34 -12.05 16 20 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 21 C 0.07 1.75 5.25 -17.35 -0.09 1.66 16 22 N -0.80 -19.78 10.84 55.55 0.60 -19.17 16 23 Si 0.91 17.99 29.57 -169.99 -5.03 12.96 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.13 -2.98 8.66 -38.88 -0.34 -3.31 16 28 H 0.09 1.40 6.56 -51.93 -0.34 1.06 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.51 3.23 -51.93 -0.17 1.34 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.77 6.12 -51.93 -0.32 0.46 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.39 6.81 -51.93 -0.35 1.03 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 2.07 7.60 -52.49 -0.40 1.68 16 42 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 43 H 0.13 3.21 6.22 -52.49 -0.33 2.88 16 44 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 45 H 0.12 2.58 5.46 -52.48 -0.29 2.29 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -29.16 357.44 -10.13 -39.29 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.29 Total: 9.20 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: -1.95 Total: -36.27 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.30 Total: -35.17 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.98 Total: -45.70 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.57 Total: 50.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.16 -10.13 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.859 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds