Wall clock time and date at job start Tue Mar 31 2020 23:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.67916 * 2 1 4 4 C 1.53292 * 109.67815 * 120.55860 * 2 1 3 5 5 O 1.42968 * 109.22140 * 172.02355 * 4 2 1 6 6 C 1.42962 * 114.16624 * 297.41360 * 5 4 2 7 7 C 1.52995 * 109.51202 * 182.50473 * 6 5 4 8 8 C 1.52996 * 109.51309 * 302.60686 * 6 5 4 9 9 C 1.53304 * 109.21873 * 62.58233 * 6 5 4 10 10 N 1.47150 * 108.38553 * 307.69424 * 9 6 5 11 11 S 1.65588 * 120.98389 * 230.80836 * 10 9 6 12 12 O 1.42101 * 106.40258 * 16.11701 * 11 10 9 13 13 O 1.42101 * 106.40610 * 149.02995 * 11 10 9 14 14 C 1.76200 * 107.22237 * 262.57208 * 11 10 9 15 15 C 1.38659 * 119.87393 * 89.99875 * 14 11 10 16 16 C 1.38609 * 120.50177 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.24927 * 359.97438 * 16 15 14 18 18 C 1.40702 * 119.74114 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.24013 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99547 * 151.16631 * 19 18 17 21 21 C 1.39938 * 120.00120 * 331.17386 * 19 18 17 22 22 N 1.30821 * 120.00475 * 349.32761 * 21 19 18 23 23 Si 1.86807 * 119.99628 * 169.32684 * 21 19 18 24 24 H 1.48494 * 109.47302 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47102 * 119.99998 * 23 21 19 26 26 H 1.48500 * 109.46763 * 239.99750 * 23 21 19 27 27 C 1.37587 * 119.87753 * 269.72577 * 14 11 10 28 28 H 1.09003 * 109.47863 * 186.45860 * 1 2 3 29 29 H 1.08998 * 109.46986 * 306.46208 * 1 2 3 30 30 H 1.08998 * 109.47164 * 66.45756 * 1 2 3 31 31 H 1.09005 * 109.51206 * 291.94609 * 4 2 1 32 32 H 1.09000 * 109.51594 * 52.09901 * 4 2 1 33 33 H 1.08997 * 109.47137 * 60.00191 * 7 6 5 34 34 H 1.08999 * 109.47065 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47371 * 300.00066 * 7 6 5 36 36 H 1.09001 * 109.47259 * 59.99946 * 8 6 5 37 37 H 1.09002 * 109.46944 * 179.97438 * 8 6 5 38 38 H 1.08991 * 109.47603 * 299.99831 * 8 6 5 39 39 H 1.09002 * 109.67656 * 187.96950 * 9 6 5 40 40 H 1.08999 * 109.67997 * 67.41906 * 9 6 5 41 41 H 1.08001 * 119.74945 * 0.02562 * 15 14 11 42 42 H 1.07996 * 119.87556 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.12865 * 180.02562 * 17 16 15 44 44 H 0.96994 * 120.00457 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.12827 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0462 -0.7339 1.2429 5 8 3.4635 -0.8916 1.1417 6 6 3.8859 -1.6897 0.0333 7 6 5.4081 -1.8400 0.0624 8 6 3.2342 -3.0712 0.1206 9 6 3.4638 -1.0048 -1.2717 10 7 2.0255 -0.7037 -1.1937 11 16 0.9941 -1.1495 -2.4100 12 8 1.6873 -2.1133 -3.1909 13 8 -0.2626 -1.4040 -1.7974 14 6 0.7673 0.2590 -3.4441 15 6 1.6164 0.4699 -4.5198 16 6 1.4495 1.5732 -5.3420 17 6 0.4363 2.4725 -5.0986 18 6 -0.4313 2.2686 -4.0099 19 6 -1.4754 3.1860 -3.7497 20 1 -2.3823 2.8498 -3.2691 21 6 -1.3336 4.5294 -4.1151 22 7 -0.1692 4.9826 -4.5026 23 14 -2.8072 5.6756 -4.0495 24 1 -3.9991 4.9232 -3.5823 25 1 -2.5256 6.7907 -3.1101 26 1 -3.0684 6.2239 -5.4046 27 6 -0.2551 1.1424 -3.1845 28 1 -0.3635 -1.0211 0.1156 29 1 -0.3633 0.6107 0.8265 30 1 -0.3633 0.4105 -0.9421 31 1 1.8072 -0.1533 2.1340 32 1 1.5745 -1.7143 1.3090 33 1 5.7078 -2.3229 0.9925 34 1 5.7294 -2.4482 -0.7831 35 1 5.8718 -0.8556 -0.0016 36 1 2.1498 -2.9635 0.0980 37 1 3.5563 -3.6790 -0.7250 38 1 3.5319 -3.5553 1.0507 39 1 3.6545 -1.6702 -2.1137 40 1 4.0261 -0.0799 -1.3993 41 1 2.4133 -0.2312 -4.7190 42 1 2.1164 1.7275 -6.1773 43 1 0.3078 3.3313 -5.7407 44 1 -0.0708 5.9138 -4.7554 45 1 -0.9183 0.9736 -2.3490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:57 Heat of formation + Delta-G solvation = -103.672192 kcal Electronic energy + Delta-G solvation = -29114.405489 eV Core-core repulsion = 25223.460259 eV Total energy + Delta-G solvation = -3890.945229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98024 -39.50601 -38.63138 -37.00743 -36.32464 -35.65631 -34.88763 -31.97445 -31.68468 -31.43070 -28.53313 -27.39011 -27.07330 -26.43557 -23.66071 -23.33156 -22.86153 -20.80292 -20.25431 -19.39536 -18.23354 -17.89591 -17.75225 -17.03040 -16.88771 -16.59849 -16.33295 -15.89099 -15.78702 -15.52902 -15.24309 -15.03107 -14.61064 -14.45658 -14.02297 -13.76832 -13.50946 -13.29192 -13.25080 -13.14870 -13.04164 -12.97424 -12.90737 -12.85555 -12.81741 -12.69842 -12.64726 -12.40453 -12.22246 -12.03075 -11.91308 -11.55861 -11.31257 -11.21035 -11.11161 -11.00211 -9.94764 -9.69579 -9.54174 -8.69317 -6.49216 -0.59229 0.37000 0.80394 1.37414 1.43266 1.51984 1.94387 2.17608 2.56708 2.72005 2.75807 3.30236 3.45063 3.59290 3.67216 3.91190 3.95486 4.03333 4.16956 4.23789 4.29831 4.36307 4.55649 4.63146 4.65090 4.68572 4.75977 4.81777 4.82451 4.86620 4.91793 4.99842 5.01419 5.03820 5.11819 5.19365 5.24571 5.37902 5.38830 5.49809 5.51224 5.58608 5.84624 5.93578 6.07155 6.23439 6.50846 6.79465 6.82411 8.28066 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.003746 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.440348 B = 7473.486601 C = 7873.057542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.118 3.882 3 H 0.081 0.919 4 C 0.056 3.944 5 O -0.377 6.377 6 C 0.101 3.899 7 C -0.134 4.134 8 C -0.182 4.182 9 C 0.086 3.914 10 N -0.991 5.991 11 S 2.707 3.293 12 O -0.986 6.986 13 O -0.976 6.976 14 C -0.646 4.646 15 C -0.147 4.147 16 C -0.126 4.126 17 C -0.134 4.134 18 C 0.062 3.938 19 C -0.496 4.496 20 H 0.079 0.921 21 C 0.035 3.965 22 N -0.831 5.831 23 Si 0.985 3.015 24 H -0.259 1.259 25 H -0.264 1.264 26 H -0.264 1.264 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.290 0.710 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -8.255 9.670 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.013 3.987 3 H 0.099 0.901 4 C -0.022 4.022 5 O -0.296 6.296 6 C 0.060 3.940 7 C -0.192 4.192 8 C -0.240 4.240 9 C -0.039 4.039 10 N -0.831 5.831 11 S 2.803 3.197 12 O -0.976 6.976 13 O -0.966 6.966 14 C -0.734 4.734 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.154 4.154 18 C 0.059 3.941 19 C -0.526 4.526 20 H 0.097 0.903 21 C -0.179 4.179 22 N -0.457 5.457 23 Si 0.805 3.195 24 H -0.182 1.182 25 H -0.189 1.189 26 H -0.189 1.189 27 C -0.161 4.161 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.133 0.867 44 H 0.101 0.899 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.710 -8.794 9.598 15.130 hybrid contribution -0.844 1.513 -0.869 1.938 sum 6.867 -7.282 8.729 13.281 Atomic orbital electron populations 1.22767 0.92575 1.05247 1.04050 1.21852 0.95086 0.96776 0.85025 0.90118 1.23115 0.81412 1.00609 0.97031 1.87960 1.22129 1.71677 1.47859 1.21949 0.97026 0.89976 0.85092 1.21760 0.89782 1.03495 1.04112 1.22454 1.00748 0.96630 1.04144 1.22444 0.79224 1.01910 1.00341 1.57702 1.19169 1.74076 1.32165 1.01317 0.72763 0.73454 0.72194 1.93447 1.74899 1.58728 1.70569 1.93608 1.42875 1.84997 1.75148 1.30387 1.06817 1.21551 1.14689 1.20465 1.00349 0.99181 0.96800 1.21159 0.98564 0.94888 0.99865 1.21706 0.97183 0.99155 0.97373 1.18080 0.93320 0.92072 0.90655 1.19868 1.02350 0.93755 1.36641 0.90272 1.26718 0.99486 1.00138 0.91531 1.69789 1.25083 1.17591 1.33263 0.85107 0.77816 0.77401 0.79133 1.18236 1.18909 1.18877 1.21065 0.98043 0.96888 1.00069 0.89376 0.88845 0.92487 0.85387 0.91661 0.90449 0.89207 0.91411 0.93546 0.90400 0.89944 0.87721 0.90039 0.85386 0.85541 0.86718 0.89920 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.54 7.56 71.98 0.54 -5.00 16 2 C 0.12 3.24 3.71 44.96 0.17 3.41 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.06 1.24 5.90 72.08 0.43 1.66 16 5 O -0.38 -8.82 10.23 -148.98 -1.52 -10.34 16 6 C 0.10 2.16 1.11 -10.69 -0.01 2.15 16 7 C -0.13 -2.11 8.85 71.98 0.64 -1.47 16 8 C -0.18 -3.73 8.09 71.98 0.58 -3.15 16 9 C 0.09 2.20 5.40 86.36 0.47 2.67 16 10 N -0.99 -30.16 2.86 -489.35 -1.40 -31.55 16 11 S 2.71 101.51 5.31 -56.49 -0.30 101.21 16 12 O -0.99 -38.81 15.74 -128.00 -2.01 -40.83 16 13 O -0.98 -38.88 12.53 -128.00 -1.60 -40.49 16 14 C -0.65 -28.58 5.96 22.22 0.13 -28.45 16 15 C -0.15 -6.41 9.53 22.46 0.21 -6.20 16 16 C -0.13 -5.68 10.02 22.22 0.22 -5.46 16 17 C -0.13 -6.89 8.66 22.73 0.20 -6.69 16 18 C 0.06 3.29 5.55 -21.29 -0.12 3.17 16 19 C -0.50 -26.14 9.06 23.46 0.21 -25.93 16 20 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 21 C 0.04 1.73 5.25 85.26 0.45 2.18 16 22 N -0.83 -41.82 10.84 21.82 0.24 -41.58 16 23 Si 0.98 37.13 29.57 68.60 2.03 39.16 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.14 -6.83 8.66 22.73 0.20 -6.63 16 28 H 0.09 2.63 6.56 -2.39 -0.02 2.62 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.06 2.03 3.23 -2.39 -0.01 2.03 16 31 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.07 1.38 6.23 -2.39 -0.01 1.37 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 1.08 6.12 -2.39 -0.01 1.07 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 2.64 6.81 -2.39 -0.02 2.62 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.13 4.89 7.60 -2.91 -0.02 4.87 16 42 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.11 6.05 6.22 -2.91 -0.02 6.03 16 44 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 45 H 0.12 5.60 5.46 -2.91 -0.02 5.58 16 Total: -1.00 -63.54 357.44 0.75 -62.79 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 1.01 Total: 35.37 kcal Atomic # 6 Polarization: -78.06 SS G_CDS: 4.32 Total: -73.74 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.16 Total: -73.14 kcal Atomic # 8 Polarization: -86.51 SS G_CDS: -5.14 Total: -91.65 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 101.51 SS G_CDS: -0.30 Total: 101.21 kcal Total: -63.54 0.75 -62.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.882 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds