Wall clock time and date at job start Tue Mar 31 2020 22:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 H 1.08998 * 108.57553 * 52.93666 * 3 2 1 5 5 C 1.47475 * 108.55131 * 170.84801 * 3 2 1 6 6 N 1.50125 * 106.49022 * 178.00642 * 5 3 2 7 7 S 1.65595 * 120.63596 * 111.36564 * 6 5 3 8 8 O 1.42097 * 106.39972 * 156.18620 * 7 6 5 9 9 O 1.42104 * 106.40069 * 23.26745 * 7 6 5 10 10 C 1.76197 * 107.22187 * 269.72760 * 7 6 5 11 11 C 1.38660 * 119.87776 * 269.73153 * 10 7 6 12 12 C 1.38608 * 120.50523 * 179.72025 * 11 10 7 13 13 C 1.37643 * 120.24382 * 0.54568 * 12 11 10 14 14 C 1.40696 * 119.74485 * 359.73435 * 13 12 11 15 15 C 1.41401 * 120.24187 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99747 * 204.40187 * 15 14 13 17 17 C 1.39947 * 120.00054 * 24.39889 * 15 14 13 18 18 N 1.30827 * 120.00098 * 17.86799 * 17 15 14 19 19 Si 1.86802 * 119.99997 * 197.86286 * 17 15 14 20 20 H 1.48497 * 109.47038 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47141 * 120.00080 * 19 17 15 22 22 H 1.48500 * 109.46966 * 240.00531 * 19 17 15 23 23 C 1.37592 * 119.87595 * 89.99630 * 10 7 6 24 24 C 1.43426 * 118.72390 * 291.10038 * 6 5 3 25 25 C 1.55323 * 116.23941 * 89.62385 * 24 6 5 26 26 C 1.55186 * 108.87550 * 319.45862 * 25 24 6 27 27 O 1.39636 * 110.56784 * 322.14451 * 26 25 24 28 28 H 1.08998 * 109.46656 * 60.00543 * 1 2 3 29 29 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46971 * 300.00584 * 1 2 3 31 31 H 1.08998 * 109.47681 * 239.99618 * 2 1 3 32 32 H 1.09006 * 109.46952 * 119.99417 * 2 1 3 33 33 H 1.09001 * 110.12043 * 58.79160 * 5 3 2 34 34 H 1.09005 * 110.15037 * 297.23695 * 5 3 2 35 35 H 1.08007 * 119.74529 * 359.97359 * 11 10 7 36 36 H 1.07997 * 119.87679 * 180.27754 * 12 11 10 37 37 H 1.07998 * 120.12512 * 179.74348 * 13 12 11 38 38 H 0.96996 * 119.99869 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12987 * 359.97438 * 23 10 7 40 40 H 1.09007 * 108.11908 * 211.37995 * 24 6 5 41 41 H 1.09002 * 108.12711 * 327.86070 * 24 6 5 42 42 H 1.09007 * 109.57388 * 79.27988 * 25 24 6 43 43 H 1.09003 * 109.57096 * 199.64329 * 25 24 6 44 44 H 1.09000 * 109.25893 * 82.42753 * 26 25 24 45 45 H 1.09000 * 109.25484 * 201.86417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5686 1.9774 0.8245 5 6 3.4978 1.4248 0.2224 6 7 3.9551 2.8535 0.1644 7 16 4.5025 3.6202 1.5262 8 8 5.3446 4.6750 1.0818 9 8 4.9380 2.5994 2.4138 10 6 3.1104 4.3834 2.2905 11 6 2.7636 5.6829 1.9535 12 6 1.6676 6.2939 2.5424 13 6 0.9173 5.6187 3.4782 14 6 1.2634 4.3018 3.8323 15 6 0.5002 3.5986 4.7928 16 1 0.9478 2.7896 5.3510 17 6 -0.8349 3.9511 5.0202 18 7 -1.4821 4.6669 4.1368 19 14 -1.6930 3.3994 6.5851 20 1 -0.7492 2.6079 7.4145 21 1 -2.1434 4.5906 7.3489 22 1 -2.8684 2.5616 6.2360 23 6 2.3748 3.6895 3.2235 24 6 3.9142 3.5398 -1.0943 25 6 2.5937 4.2873 -1.4263 26 6 1.3942 3.4110 -0.9776 27 8 1.6540 2.0611 -1.2230 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9892 0.8443 -0.5585 34 1 3.7232 1.0008 1.2010 35 1 3.3495 6.2218 1.2235 36 1 1.4039 7.3049 2.2691 37 1 0.0662 6.0981 3.9389 38 1 -2.4075 4.9108 4.2943 39 1 2.6489 2.6788 3.4874 40 1 4.7280 4.2648 -1.1118 41 1 4.0993 2.8115 -1.8839 42 1 2.5694 5.2390 -0.8953 43 1 2.5347 4.4648 -2.5002 44 1 1.2222 3.5558 0.0890 45 1 0.5033 3.7116 -1.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619598188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:41 Heat of formation + Delta-G solvation = -101.346473 kcal Electronic energy + Delta-G solvation = -29514.589204 eV Core-core repulsion = 25623.744825 eV Total energy + Delta-G solvation = -3890.844379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.81518 -37.69238 -36.81865 -35.49618 -35.28926 -34.33302 -33.89990 -31.11567 -30.12680 -29.84624 -28.14570 -25.81568 -25.53490 -22.98630 -21.92711 -21.23082 -21.07746 -21.04077 -18.61880 -18.00627 -17.28148 -16.54243 -16.08936 -15.89639 -15.46493 -15.21768 -14.88140 -14.66730 -14.43722 -13.79012 -13.63603 -13.55396 -13.39327 -13.21587 -12.65487 -12.49469 -12.33810 -12.13356 -11.93708 -11.80790 -11.66246 -11.54084 -11.46587 -11.42338 -11.36445 -11.05729 -10.99418 -10.92257 -10.77351 -10.63963 -10.48577 -10.27903 -9.81577 -9.67625 -9.40342 -9.38048 -8.78617 -8.08045 -7.75845 -6.98416 -4.59050 0.93155 2.13725 2.57222 2.96863 3.00064 3.03417 3.36567 3.78626 4.06203 4.21638 4.35955 4.68565 4.91611 4.98388 5.05601 5.19703 5.21606 5.28919 5.35024 5.38380 5.53349 5.64823 5.70814 5.84527 5.94266 5.95062 5.99008 5.99750 6.07458 6.07773 6.11600 6.17449 6.28759 6.32275 6.44910 6.58949 6.68956 6.72977 6.90719 6.99945 7.16090 7.32917 7.40479 7.67666 7.75612 7.88753 8.35079 8.61701 8.66343 9.96765 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005192 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.031207 B = 5392.104185 C = 6407.564171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.057 3.943 4 H 0.078 0.922 5 C 0.102 3.898 6 N -0.996 5.996 7 S 2.682 3.318 8 O -0.972 6.972 9 O -0.970 6.970 10 C -0.631 4.631 11 C -0.145 4.145 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.093 3.907 15 C -0.459 4.459 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.909 3.091 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.128 4.128 24 C 0.123 3.877 25 C -0.168 4.168 26 C 0.051 3.949 27 O -0.347 6.347 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -4.594 -8.748 10.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.002 4.002 4 H 0.096 0.904 5 C -0.022 4.022 6 N -0.832 5.832 7 S 2.780 3.220 8 O -0.963 6.963 9 O -0.961 6.961 10 C -0.723 4.723 11 C -0.166 4.166 12 C -0.139 4.139 13 C -0.138 4.138 14 C 0.090 3.910 15 C -0.489 4.489 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.733 3.267 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.198 1.198 23 C -0.149 4.149 24 C -0.005 4.005 25 C -0.208 4.208 26 C -0.027 4.027 27 O -0.265 6.265 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.813 -4.613 -8.730 10.267 hybrid contribution -1.361 0.325 0.903 1.665 sum 1.452 -4.289 -7.827 9.042 Atomic orbital electron populations 1.21714 0.95109 1.01304 1.02623 1.21690 0.97132 0.94904 1.02550 1.21743 0.94900 0.95421 0.88151 0.90404 1.21767 0.94900 0.81110 1.04426 1.57707 1.81950 1.20436 1.23060 1.01921 0.74814 0.73015 0.72287 1.93495 1.64907 1.56410 1.81442 1.93510 1.80624 1.58321 1.63601 1.29800 1.21739 1.06484 1.14274 1.20042 0.99267 0.93726 1.03596 1.20804 0.95948 0.98506 0.98686 1.21642 0.99785 0.94253 0.98070 1.17668 0.90793 0.91528 0.91049 1.19645 0.95229 1.15841 1.18149 0.89905 1.25920 0.97705 0.93442 0.97136 1.69778 1.11073 1.28907 1.32005 0.86239 0.79377 0.79458 0.81651 1.18191 1.19577 1.19827 1.20736 0.98340 0.98236 0.97607 1.20735 0.97274 0.96904 0.85559 1.23438 0.95778 0.99657 1.01918 1.22579 0.96312 0.82005 1.01762 1.87607 1.87079 1.21469 1.30363 0.92209 0.93008 0.92339 0.91276 0.90596 0.89719 0.87369 0.87736 0.88446 0.85779 0.90617 0.87254 0.90243 0.90626 0.90603 0.90485 0.91293 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.79 37.16 0.36 -1.48 16 2 C -0.12 -1.47 5.55 -26.73 -0.15 -1.62 16 3 C 0.06 0.79 2.03 -29.39 -0.06 0.73 16 4 H 0.08 1.27 6.75 -51.93 -0.35 0.92 16 5 C 0.10 1.38 5.55 -4.68 -0.03 1.35 16 6 N -1.00 -15.30 2.89 -115.28 -0.33 -15.64 16 7 S 2.68 50.85 5.73 -107.50 -0.62 50.23 16 8 O -0.97 -19.89 15.85 -57.17 -0.91 -20.80 16 9 O -0.97 -20.10 15.91 -57.17 -0.91 -21.01 16 10 C -0.63 -13.33 5.97 -39.66 -0.24 -13.56 16 11 C -0.15 -3.03 9.48 -39.29 -0.37 -3.41 16 12 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 13 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 14 C 0.09 2.30 5.58 -106.82 -0.60 1.71 16 15 C -0.46 -11.34 9.05 -37.74 -0.34 -11.68 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 17 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 18 N -0.79 -18.85 10.95 55.55 0.61 -18.24 16 19 Si 0.91 17.57 29.60 -169.99 -5.03 12.54 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.13 -2.93 9.26 -38.87 -0.36 -3.29 16 24 C 0.12 1.67 5.30 -4.44 -0.02 1.65 16 25 C -0.17 -2.22 6.75 -24.34 -0.16 -2.38 16 26 C 0.05 0.74 6.38 38.31 0.24 0.99 16 27 O -0.35 -4.96 9.32 -31.92 -0.30 -5.25 16 28 H 0.06 0.75 7.78 -51.93 -0.40 0.35 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.46 7.01 -51.93 -0.36 1.10 16 35 H 0.10 2.00 7.59 -52.48 -0.40 1.60 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.05 6.15 -52.49 -0.32 2.72 16 38 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 39 H 0.11 2.41 7.60 -52.49 -0.40 2.01 16 40 H 0.08 1.09 6.94 -51.93 -0.36 0.73 16 41 H 0.08 0.91 7.98 -51.93 -0.41 0.49 16 42 H 0.08 1.05 8.10 -51.92 -0.42 0.63 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.17 6.66 -51.93 -0.35 0.83 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -28.17 369.89 -11.16 -39.34 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.71 Total: 8.70 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: -2.55 Total: -35.44 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.28 Total: -33.88 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -2.11 Total: -47.07 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 50.85 SS G_CDS: -0.62 Total: 50.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.17 -11.16 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619598188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.009 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds