Wall clock time and date at job start Tue Mar 31 2020 22:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 H 1.08998 * 108.57553 * 52.93666 * 3 2 1 5 5 C 1.47475 * 108.55131 * 170.84801 * 3 2 1 6 6 N 1.50125 * 106.49022 * 178.00642 * 5 3 2 7 7 S 1.65595 * 120.63596 * 111.36564 * 6 5 3 8 8 O 1.42097 * 106.39972 * 156.18620 * 7 6 5 9 9 O 1.42104 * 106.40069 * 23.26745 * 7 6 5 10 10 C 1.76197 * 107.22187 * 269.72760 * 7 6 5 11 11 C 1.38660 * 119.87776 * 269.73153 * 10 7 6 12 12 C 1.38608 * 120.50523 * 179.72025 * 11 10 7 13 13 C 1.37643 * 120.24382 * 0.54568 * 12 11 10 14 14 C 1.40696 * 119.74485 * 359.73435 * 13 12 11 15 15 C 1.41401 * 120.24187 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99747 * 204.40187 * 15 14 13 17 17 C 1.39947 * 120.00054 * 24.39889 * 15 14 13 18 18 N 1.30827 * 120.00098 * 17.86799 * 17 15 14 19 19 Si 1.86802 * 119.99997 * 197.86286 * 17 15 14 20 20 H 1.48497 * 109.47038 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47141 * 120.00080 * 19 17 15 22 22 H 1.48500 * 109.46966 * 240.00531 * 19 17 15 23 23 C 1.37592 * 119.87595 * 89.99630 * 10 7 6 24 24 C 1.43426 * 118.72390 * 291.10038 * 6 5 3 25 25 C 1.55323 * 116.23941 * 89.62385 * 24 6 5 26 26 C 1.55186 * 108.87550 * 319.45862 * 25 24 6 27 27 O 1.39636 * 110.56784 * 322.14451 * 26 25 24 28 28 H 1.08998 * 109.46656 * 60.00543 * 1 2 3 29 29 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46971 * 300.00584 * 1 2 3 31 31 H 1.08998 * 109.47681 * 239.99618 * 2 1 3 32 32 H 1.09006 * 109.46952 * 119.99417 * 2 1 3 33 33 H 1.09001 * 110.12043 * 58.79160 * 5 3 2 34 34 H 1.09005 * 110.15037 * 297.23695 * 5 3 2 35 35 H 1.08007 * 119.74529 * 359.97359 * 11 10 7 36 36 H 1.07997 * 119.87679 * 180.27754 * 12 11 10 37 37 H 1.07998 * 120.12512 * 179.74348 * 13 12 11 38 38 H 0.96996 * 119.99869 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.12987 * 359.97438 * 23 10 7 40 40 H 1.09007 * 108.11908 * 211.37995 * 24 6 5 41 41 H 1.09002 * 108.12711 * 327.86070 * 24 6 5 42 42 H 1.09007 * 109.57388 * 79.27988 * 25 24 6 43 43 H 1.09003 * 109.57096 * 199.64329 * 25 24 6 44 44 H 1.09000 * 109.25893 * 82.42753 * 26 25 24 45 45 H 1.09000 * 109.25484 * 201.86417 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5686 1.9774 0.8245 5 6 3.4978 1.4248 0.2224 6 7 3.9551 2.8535 0.1644 7 16 4.5025 3.6202 1.5262 8 8 5.3446 4.6750 1.0818 9 8 4.9380 2.5994 2.4138 10 6 3.1104 4.3834 2.2905 11 6 2.7636 5.6829 1.9535 12 6 1.6676 6.2939 2.5424 13 6 0.9173 5.6187 3.4782 14 6 1.2634 4.3018 3.8323 15 6 0.5002 3.5986 4.7928 16 1 0.9478 2.7896 5.3510 17 6 -0.8349 3.9511 5.0202 18 7 -1.4821 4.6669 4.1368 19 14 -1.6930 3.3994 6.5851 20 1 -0.7492 2.6079 7.4145 21 1 -2.1434 4.5906 7.3489 22 1 -2.8684 2.5616 6.2360 23 6 2.3748 3.6895 3.2235 24 6 3.9142 3.5398 -1.0943 25 6 2.5937 4.2873 -1.4263 26 6 1.3942 3.4110 -0.9776 27 8 1.6540 2.0611 -1.2230 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9892 0.8443 -0.5585 34 1 3.7232 1.0008 1.2010 35 1 3.3495 6.2218 1.2235 36 1 1.4039 7.3049 2.2691 37 1 0.0662 6.0981 3.9389 38 1 -2.4075 4.9108 4.2943 39 1 2.6489 2.6788 3.4874 40 1 4.7280 4.2648 -1.1118 41 1 4.0993 2.8115 -1.8839 42 1 2.5694 5.2390 -0.8953 43 1 2.5347 4.4648 -2.5002 44 1 1.2222 3.5558 0.0890 45 1 0.5033 3.7116 -1.5288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619598188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:40 Heat of formation + Delta-G solvation = -117.510024 kcal Electronic energy + Delta-G solvation = -29515.290108 eV Core-core repulsion = 25623.744825 eV Total energy + Delta-G solvation = -3891.545283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94739 -39.45183 -38.40576 -36.98424 -36.59684 -35.68156 -35.39007 -32.19485 -31.90511 -31.59849 -29.27679 -27.35094 -26.95548 -24.14026 -23.58324 -22.80973 -22.39226 -22.18091 -20.19678 -19.49377 -18.71127 -17.85969 -17.61633 -17.33662 -16.80842 -16.65426 -16.47285 -16.14609 -15.68454 -15.25409 -15.09478 -14.80539 -14.68634 -14.37130 -14.32068 -13.78968 -13.63535 -13.50891 -13.41818 -13.31699 -13.13128 -13.06355 -13.04570 -12.85334 -12.78759 -12.64275 -12.46209 -12.23854 -12.06251 -11.81883 -11.59409 -11.54406 -11.45114 -11.30187 -11.14952 -10.54219 -10.04276 -9.81019 -9.56121 -8.74350 -6.45444 -0.57937 0.39405 0.83374 1.36407 1.42875 1.50689 1.95871 2.16181 2.54737 2.71920 2.94125 3.29145 3.49678 3.72126 3.84468 3.99305 4.11458 4.13059 4.25566 4.28454 4.32810 4.41521 4.46095 4.55919 4.66763 4.76589 4.82442 4.86582 4.88636 4.90768 4.92986 4.98751 5.06617 5.09711 5.13028 5.19576 5.22188 5.27176 5.39480 5.44304 5.55494 5.67621 5.88369 5.93156 6.09264 6.25148 6.52008 6.79360 6.84086 8.23213 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011148 B = 0.005192 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.031207 B = 5392.104185 C = 6407.564171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.058 3.942 4 H 0.044 0.956 5 C 0.098 3.902 6 N -0.988 5.988 7 S 2.704 3.296 8 O -0.984 6.984 9 O -0.989 6.989 10 C -0.636 4.636 11 C -0.143 4.143 12 C -0.121 4.121 13 C -0.140 4.140 14 C 0.067 3.933 15 C -0.495 4.495 16 H 0.077 0.923 17 C 0.041 3.959 18 N -0.818 5.818 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.141 4.141 24 C 0.113 3.887 25 C -0.165 4.165 26 C 0.052 3.948 27 O -0.345 6.345 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.291 0.709 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.035 0.965 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -5.399 -10.360 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.001 4.001 4 H 0.063 0.937 5 C -0.025 4.025 6 N -0.826 5.826 7 S 2.798 3.202 8 O -0.974 6.974 9 O -0.979 6.979 10 C -0.725 4.725 11 C -0.164 4.164 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.064 3.936 15 C -0.524 4.524 16 H 0.095 0.905 17 C -0.175 4.175 18 N -0.444 5.444 19 Si 0.798 3.202 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.162 4.162 24 C -0.013 4.013 25 C -0.204 4.204 26 C -0.026 4.026 27 O -0.263 6.263 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.084 0.916 43 H 0.124 0.876 44 H 0.054 0.946 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.267 -5.394 -10.334 12.106 hybrid contribution -1.464 0.570 1.258 2.013 sum 1.803 -4.824 -9.076 10.435 Atomic orbital electron populations 1.21691 0.95709 1.02090 1.01088 1.21718 0.96564 0.93583 1.04120 1.21702 0.95086 0.96304 0.86990 0.93742 1.22021 0.94715 0.80164 1.05631 1.57497 1.81689 1.21086 1.22318 1.01276 0.73904 0.72468 0.72503 1.93472 1.65027 1.57237 1.81681 1.93481 1.80793 1.58615 1.65018 1.30248 1.21994 1.06744 1.13549 1.20350 0.98974 0.93709 1.03380 1.21097 0.95613 0.99589 0.97689 1.21625 1.00351 0.94441 0.99580 1.17988 0.91718 0.92209 0.91716 1.19846 0.96450 1.16738 1.19366 0.90459 1.26665 0.97753 0.93277 0.99788 1.69811 1.11711 1.29501 1.33361 0.85222 0.78207 0.79181 0.77598 1.18356 1.18821 1.18853 1.20768 0.98629 0.98432 0.98396 1.21003 0.97515 0.97758 0.85063 1.23452 0.94747 0.98678 1.03568 1.22534 0.97576 0.82605 0.99854 1.87591 1.87216 1.21213 1.30236 0.92763 0.91050 0.94828 0.89069 0.89554 0.86218 0.87629 0.85572 0.85811 0.87016 0.89811 0.87444 0.90032 0.87881 0.91561 0.87603 0.94648 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.79 71.98 0.70 -2.84 16 2 C -0.12 -2.67 5.55 30.59 0.17 -2.50 16 3 C 0.06 1.57 2.03 28.87 0.06 1.63 16 4 H 0.04 1.51 6.75 -2.39 -0.02 1.49 16 5 C 0.10 2.46 5.55 83.95 0.47 2.92 16 6 N -0.99 -28.74 2.89 -518.62 -1.50 -30.24 16 7 S 2.70 100.74 5.73 -56.49 -0.32 100.41 16 8 O -0.98 -38.91 15.85 -128.00 -2.03 -40.94 16 9 O -0.99 -40.72 15.91 -128.00 -2.04 -42.75 16 10 C -0.64 -27.23 5.97 22.22 0.13 -27.10 16 11 C -0.14 -5.98 9.48 22.46 0.21 -5.76 16 12 C -0.12 -5.26 10.02 22.22 0.22 -5.04 16 13 C -0.14 -6.97 8.70 22.73 0.20 -6.77 16 14 C 0.07 3.47 5.58 -21.29 -0.12 3.35 16 15 C -0.49 -25.61 9.05 23.46 0.21 -25.40 16 16 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 17 C 0.04 1.97 5.14 85.26 0.44 2.41 16 18 N -0.82 -40.12 10.95 21.83 0.24 -39.88 16 19 Si 0.98 36.58 29.60 68.60 2.03 38.61 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 23 C -0.14 -6.74 9.26 22.73 0.21 -6.53 16 24 C 0.11 2.78 5.30 87.75 0.47 3.24 16 25 C -0.16 -3.99 6.75 32.14 0.22 -3.78 16 26 C 0.05 1.48 6.38 72.73 0.46 1.94 16 27 O -0.34 -9.27 9.32 -137.15 -1.28 -10.55 16 28 H 0.05 1.33 7.78 -2.39 -0.02 1.31 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.72 8.09 -2.38 -0.02 1.70 16 33 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.11 2.74 7.01 -2.38 -0.02 2.72 16 35 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 36 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.11 5.74 6.15 -2.91 -0.02 5.72 16 38 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 39 H 0.11 5.00 7.60 -2.91 -0.02 4.98 16 40 H 0.08 2.01 6.94 -2.38 -0.02 2.00 16 41 H 0.10 2.04 7.98 -2.39 -0.02 2.02 16 42 H 0.07 1.73 8.10 -2.38 -0.02 1.72 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.24 6.66 -2.39 -0.02 1.23 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -61.94 369.89 0.14 -61.80 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.98 Total: 33.76 kcal Atomic # 6 Polarization: -74.27 SS G_CDS: 4.05 Total: -70.22 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.26 Total: -70.12 kcal Atomic # 8 Polarization: -88.90 SS G_CDS: -5.34 Total: -94.24 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 16 Polarization: 100.74 SS G_CDS: -0.32 Total: 100.41 kcal Total: -61.94 0.14 -61.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619598188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.711 kcal (2) G-P(sol) polarization free energy of solvation -61.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds