Wall clock time and date at job start Tue Mar 31 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46751 * 2 1 4 4 H 1.08997 * 109.33763 * 305.19860 * 3 2 1 5 5 C 1.54660 * 109.41239 * 185.58641 * 3 2 1 6 6 N 1.48185 * 110.49096 * 200.67679 * 5 3 2 7 7 S 1.65595 * 118.51419 * 138.65414 * 6 5 3 8 8 O 1.42096 * 106.40429 * 156.20032 * 7 6 5 9 9 O 1.42102 * 106.40180 * 23.28041 * 7 6 5 10 10 C 1.76204 * 107.22059 * 269.74149 * 7 6 5 11 11 C 1.38660 * 119.87469 * 89.99766 * 10 7 6 12 12 C 1.38615 * 120.50067 * 179.97438 * 11 10 7 13 13 C 1.37640 * 120.24395 * 0.02562 * 12 11 10 14 14 C 1.40698 * 119.74751 * 0.02562 * 13 12 11 15 15 C 1.41399 * 120.24243 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00139 * 155.60708 * 15 14 13 17 17 C 1.39941 * 119.99942 * 335.60176 * 15 14 13 18 18 N 1.30826 * 120.00084 * 342.14417 * 17 15 14 19 19 Si 1.86800 * 120.00047 * 162.14126 * 17 15 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47147 * 300.00205 * 19 17 15 22 22 H 1.48506 * 109.46841 * 60.00134 * 19 17 15 23 23 C 1.37590 * 119.87410 * 270.30305 * 10 7 6 24 24 C 1.44457 * 122.97164 * 318.38814 * 6 5 3 25 25 C 1.54865 * 109.33207 * 89.20665 * 24 6 5 26 26 C 1.47691 * 109.68195 * 290.09827 * 25 24 6 27 27 O 1.40528 * 109.40533 * 64.99691 * 3 2 1 28 28 H 1.08995 * 109.47497 * 299.99835 * 1 2 3 29 29 H 1.08997 * 109.47681 * 60.00634 * 1 2 3 30 30 H 1.09004 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46983 * 240.00232 * 2 1 3 32 32 H 1.09004 * 109.46905 * 119.99720 * 2 1 3 33 33 H 1.09000 * 109.43337 * 80.37118 * 5 3 2 34 34 H 1.09003 * 109.24532 * 320.87214 * 5 3 2 35 35 H 1.08001 * 119.74771 * 0.02562 * 11 10 7 36 36 H 1.07994 * 119.87840 * 180.02562 * 12 11 10 37 37 H 1.07999 * 120.12576 * 179.97438 * 13 12 11 38 38 H 0.97006 * 119.99652 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.13565 * 359.97438 * 23 10 7 40 40 H 1.09001 * 109.49560 * 209.16255 * 24 6 5 41 41 H 1.09007 * 109.49482 * 329.21634 * 24 6 5 42 42 H 1.09005 * 109.43767 * 50.16103 * 25 24 6 43 43 H 1.08995 * 109.44182 * 170.03580 * 25 24 6 44 44 H 1.08994 * 108.64724 * 181.87720 * 26 25 24 45 45 H 1.08997 * 108.64537 * 299.72192 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9805 -0.8404 5 6 3.5800 1.4434 -0.1420 6 7 4.1447 2.7258 0.3402 7 16 5.5333 2.6888 1.2416 8 8 6.1420 3.9642 1.0934 9 8 6.1905 1.4716 0.9164 10 6 5.0545 2.5594 2.9324 11 6 4.8901 1.3096 3.5099 12 6 4.5142 1.1927 4.8390 13 6 4.2993 2.3190 5.6003 14 6 4.4621 3.5924 5.0245 15 6 4.2447 4.7565 5.7971 16 1 4.7239 5.6845 5.5221 17 6 3.4085 4.7062 6.9181 18 7 2.5646 3.7167 7.0608 19 14 3.4972 6.0519 8.2107 20 1 2.5158 5.7684 9.2886 21 1 4.8656 6.0965 8.7856 22 1 3.1801 7.3608 7.5850 23 6 4.8390 3.6989 3.6728 24 6 3.5417 4.0071 0.0548 25 6 2.5126 4.3471 1.1610 26 6 1.3452 3.4497 1.0471 27 8 1.6673 2.0695 1.2012 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8477 1.3046 -1.1895 34 1 3.9954 0.6246 0.4455 35 1 5.0570 0.4205 2.9200 36 1 4.3894 0.2143 5.2788 37 1 4.0061 2.2258 6.6356 38 1 1.9853 3.6817 7.8381 39 1 4.9631 4.6715 3.2198 40 1 4.3147 4.7752 0.0286 41 1 3.0379 3.9650 -0.9109 42 1 2.9755 4.2177 2.1393 43 1 2.1873 5.3813 1.0483 44 1 0.6181 3.7251 1.8110 45 1 0.8890 3.5938 0.0678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619598189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:45 Heat of formation + Delta-G solvation = -104.149072 kcal Electronic energy + Delta-G solvation = -29298.973724 eV Core-core repulsion = 25408.007816 eV Total energy + Delta-G solvation = -3890.965908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.52202 -37.57760 -36.77614 -35.52063 -35.24425 -34.30325 -33.79388 -31.52783 -30.01634 -29.72789 -28.00802 -26.01666 -25.42432 -22.88175 -21.87869 -21.48970 -20.95144 -20.76601 -18.56513 -17.92966 -17.06346 -16.90697 -15.98616 -15.91223 -15.57622 -15.20205 -14.71203 -14.65522 -14.13370 -13.79106 -13.63136 -13.54176 -13.38687 -13.25136 -12.86410 -12.53573 -12.28426 -12.03538 -11.90290 -11.81853 -11.65323 -11.54353 -11.39143 -11.33631 -11.31052 -11.07771 -10.96586 -10.88948 -10.79803 -10.62809 -10.49311 -10.38895 -9.73235 -9.58172 -9.34820 -9.29899 -8.69937 -7.92942 -7.63017 -6.87731 -4.48557 1.03451 2.27156 2.69511 3.01205 3.03500 3.11641 3.43227 3.85496 3.92535 4.29378 4.46403 4.63154 4.81816 4.92909 5.04992 5.06119 5.08516 5.26879 5.31714 5.45360 5.47288 5.48353 5.63827 5.70407 5.74030 5.78417 5.89593 5.93058 6.02990 6.10565 6.13597 6.22532 6.25731 6.32352 6.54213 6.69212 6.79992 6.83887 7.00581 7.10245 7.28518 7.45088 7.54779 7.79560 7.85770 8.00074 8.45412 8.72291 8.77687 10.07458 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.004581 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.567173 B = 6110.655839 C = 6796.455270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.081 3.919 4 H 0.059 0.941 5 C 0.101 3.899 6 N -0.989 5.989 7 S 2.681 3.319 8 O -0.972 6.972 9 O -0.976 6.976 10 C -0.624 4.624 11 C -0.138 4.138 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.094 3.906 15 C -0.463 4.463 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.278 1.278 21 H -0.263 1.263 22 H -0.264 1.264 23 C -0.125 4.125 24 C 0.116 3.884 25 C -0.189 4.189 26 C 0.072 3.928 27 O -0.349 6.349 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -2.719 -11.840 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.021 3.979 4 H 0.077 0.923 5 C -0.024 4.024 6 N -0.824 5.824 7 S 2.778 3.222 8 O -0.963 6.963 9 O -0.967 6.967 10 C -0.717 4.717 11 C -0.159 4.159 12 C -0.139 4.139 13 C -0.136 4.136 14 C 0.091 3.909 15 C -0.492 4.492 16 H 0.099 0.901 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.187 1.187 22 H -0.189 1.189 23 C -0.147 4.147 24 C -0.010 4.010 25 C -0.229 4.229 26 C -0.004 4.004 27 O -0.266 6.266 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.915 -2.841 -11.923 13.206 hybrid contribution -0.639 0.688 1.089 1.438 sum -5.554 -2.153 -10.834 12.363 Atomic orbital electron populations 1.21692 0.95270 1.01497 1.02067 1.21681 0.96680 0.94924 1.03036 1.22440 0.92822 0.94526 0.88123 0.92258 1.22539 0.94973 0.84872 1.00036 1.57152 1.45811 1.10842 1.68636 1.01957 0.72773 0.72901 0.74553 1.93500 1.73819 1.42121 1.86856 1.93495 1.72121 1.46649 1.84389 1.29698 1.19846 1.00333 1.21775 1.20011 1.05915 0.93726 0.96236 1.20774 1.01315 0.97531 0.94314 1.21619 1.00481 0.91749 0.99745 1.17633 0.89588 0.93329 0.90394 1.19549 1.24734 0.96716 1.08243 0.90106 1.25899 0.93163 0.96786 0.98286 1.69787 1.14811 1.30158 1.27186 0.86344 0.79215 0.81271 0.79819 1.20306 1.18735 1.18895 1.20675 1.04827 0.94626 0.94549 1.21332 0.97251 0.84378 0.98084 1.22252 0.98241 1.00033 1.02333 1.21394 0.96320 0.81903 1.00817 1.87584 1.86934 1.21858 1.30261 0.91808 0.93293 0.92789 0.90775 0.90501 0.91074 0.89028 0.87968 0.88564 0.85868 0.90636 0.87339 0.88662 0.90714 0.88664 0.89686 0.89899 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 37.16 0.36 -1.08 16 2 C -0.13 -1.33 5.54 -26.73 -0.15 -1.48 16 3 C 0.08 0.99 2.31 -25.85 -0.06 0.93 16 4 H 0.06 0.62 7.21 -51.93 -0.37 0.24 16 5 C 0.10 1.37 5.87 -2.24 -0.01 1.35 16 6 N -0.99 -15.54 2.84 -112.53 -0.32 -15.86 16 7 S 2.68 52.75 5.58 -107.50 -0.60 52.15 16 8 O -0.97 -20.77 15.69 -57.17 -0.90 -21.66 16 9 O -0.98 -20.47 15.97 -57.17 -0.91 -21.39 16 10 C -0.62 -13.96 5.77 -39.66 -0.23 -14.19 16 11 C -0.14 -3.08 9.53 -39.29 -0.37 -3.46 16 12 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 13 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 14 C 0.09 2.43 5.58 -106.82 -0.60 1.84 16 15 C -0.46 -11.86 9.05 -37.74 -0.34 -12.20 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.79 -19.71 10.95 55.55 0.61 -19.10 16 19 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 20 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.13 -3.01 7.52 -38.88 -0.29 -3.30 16 24 C 0.12 1.58 5.65 -4.15 -0.02 1.56 16 25 C -0.19 -2.72 6.03 -28.31 -0.17 -2.89 16 26 C 0.07 0.98 6.04 34.59 0.21 1.18 16 27 O -0.35 -5.36 9.38 -34.10 -0.32 -5.68 16 28 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.32 7.10 -51.93 -0.37 0.95 16 35 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 36 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.11 2.50 7.57 -52.49 -0.40 2.10 16 40 H 0.10 1.34 6.80 -51.93 -0.35 0.98 16 41 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 42 H 0.09 1.73 6.01 -51.93 -0.31 1.42 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.44 7.28 -51.93 -0.38 0.07 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -30.29 366.77 -11.11 -41.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.66 Total: 7.93 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: -2.50 Total: -36.40 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.29 Total: -34.96 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -2.13 Total: -48.73 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 52.75 SS G_CDS: -0.60 Total: 52.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.29 -11.11 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619598189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.748 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds