Wall clock time and date at job start Tue Mar 31 2020 22:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46751 * 2 1 4 4 H 1.08997 * 109.33763 * 305.19860 * 3 2 1 5 5 C 1.54660 * 109.41239 * 185.58641 * 3 2 1 6 6 N 1.48185 * 110.49096 * 200.67679 * 5 3 2 7 7 S 1.65595 * 118.51419 * 138.65414 * 6 5 3 8 8 O 1.42096 * 106.40429 * 156.20032 * 7 6 5 9 9 O 1.42102 * 106.40180 * 23.28041 * 7 6 5 10 10 C 1.76204 * 107.22059 * 269.74149 * 7 6 5 11 11 C 1.38660 * 119.87469 * 89.99766 * 10 7 6 12 12 C 1.38615 * 120.50067 * 179.97438 * 11 10 7 13 13 C 1.37640 * 120.24395 * 0.02562 * 12 11 10 14 14 C 1.40698 * 119.74751 * 0.02562 * 13 12 11 15 15 C 1.41399 * 120.24243 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00139 * 155.60708 * 15 14 13 17 17 C 1.39941 * 119.99942 * 335.60176 * 15 14 13 18 18 N 1.30826 * 120.00084 * 342.14417 * 17 15 14 19 19 Si 1.86800 * 120.00047 * 162.14126 * 17 15 14 20 20 H 1.48502 * 109.47336 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47147 * 300.00205 * 19 17 15 22 22 H 1.48506 * 109.46841 * 60.00134 * 19 17 15 23 23 C 1.37590 * 119.87410 * 270.30305 * 10 7 6 24 24 C 1.44457 * 122.97164 * 318.38814 * 6 5 3 25 25 C 1.54865 * 109.33207 * 89.20665 * 24 6 5 26 26 C 1.47691 * 109.68195 * 290.09827 * 25 24 6 27 27 O 1.40528 * 109.40533 * 64.99691 * 3 2 1 28 28 H 1.08995 * 109.47497 * 299.99835 * 1 2 3 29 29 H 1.08997 * 109.47681 * 60.00634 * 1 2 3 30 30 H 1.09004 * 109.46807 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46983 * 240.00232 * 2 1 3 32 32 H 1.09004 * 109.46905 * 119.99720 * 2 1 3 33 33 H 1.09000 * 109.43337 * 80.37118 * 5 3 2 34 34 H 1.09003 * 109.24532 * 320.87214 * 5 3 2 35 35 H 1.08001 * 119.74771 * 0.02562 * 11 10 7 36 36 H 1.07994 * 119.87840 * 180.02562 * 12 11 10 37 37 H 1.07999 * 120.12576 * 179.97438 * 13 12 11 38 38 H 0.97006 * 119.99652 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.13565 * 359.97438 * 23 10 7 40 40 H 1.09001 * 109.49560 * 209.16255 * 24 6 5 41 41 H 1.09007 * 109.49482 * 329.21634 * 24 6 5 42 42 H 1.09005 * 109.43767 * 50.16103 * 25 24 6 43 43 H 1.08995 * 109.44182 * 170.03580 * 25 24 6 44 44 H 1.08994 * 108.64724 * 181.87720 * 26 25 24 45 45 H 1.08997 * 108.64537 * 299.72192 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6013 1.9805 -0.8404 5 6 3.5800 1.4434 -0.1420 6 7 4.1447 2.7258 0.3402 7 16 5.5333 2.6888 1.2416 8 8 6.1420 3.9642 1.0934 9 8 6.1905 1.4716 0.9164 10 6 5.0545 2.5594 2.9324 11 6 4.8901 1.3096 3.5099 12 6 4.5142 1.1927 4.8390 13 6 4.2993 2.3190 5.6003 14 6 4.4621 3.5924 5.0245 15 6 4.2447 4.7565 5.7971 16 1 4.7239 5.6845 5.5221 17 6 3.4085 4.7062 6.9181 18 7 2.5646 3.7167 7.0608 19 14 3.4972 6.0519 8.2107 20 1 2.5158 5.7684 9.2886 21 1 4.8656 6.0965 8.7856 22 1 3.1801 7.3608 7.5850 23 6 4.8390 3.6989 3.6728 24 6 3.5417 4.0071 0.0548 25 6 2.5126 4.3471 1.1610 26 6 1.3452 3.4497 1.0471 27 8 1.6673 2.0695 1.2012 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8477 1.3046 -1.1895 34 1 3.9954 0.6246 0.4455 35 1 5.0570 0.4205 2.9200 36 1 4.3894 0.2143 5.2788 37 1 4.0061 2.2258 6.6356 38 1 1.9853 3.6817 7.8381 39 1 4.9631 4.6715 3.2198 40 1 4.3147 4.7752 0.0286 41 1 3.0379 3.9650 -0.9109 42 1 2.9755 4.2177 2.1393 43 1 2.1873 5.3813 1.0483 44 1 0.6181 3.7251 1.8110 45 1 0.8890 3.5938 0.0678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619598189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:44 Heat of formation + Delta-G solvation = -122.875339 kcal Electronic energy + Delta-G solvation = -29299.785756 eV Core-core repulsion = 25408.007816 eV Total energy + Delta-G solvation = -3891.777940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.57540 -39.42167 -38.39892 -36.96944 -36.60857 -35.65229 -35.26461 -32.53377 -31.88994 -31.56168 -29.03923 -27.33772 -27.04528 -23.93053 -23.53600 -22.82654 -22.61150 -21.76130 -20.18097 -19.50631 -18.51229 -18.06008 -17.71354 -17.14674 -16.95838 -16.67188 -16.39791 -16.17815 -15.27600 -15.20055 -15.01694 -14.76168 -14.61907 -14.49620 -14.30052 -13.89435 -13.75556 -13.51882 -13.33190 -13.27683 -13.09751 -13.04593 -12.84460 -12.80046 -12.72346 -12.59877 -12.54040 -12.23608 -11.90055 -11.87132 -11.58825 -11.51371 -11.39414 -11.30022 -11.12391 -10.48037 -9.95526 -9.72729 -9.52444 -8.71069 -6.43011 -0.51362 0.44616 0.87243 1.36494 1.46023 1.49570 2.00158 2.17379 2.57290 2.74991 2.97598 3.34145 3.53522 3.70943 3.84138 3.91664 4.11527 4.20121 4.29806 4.33762 4.39697 4.42964 4.49309 4.50976 4.66423 4.73723 4.78067 4.83148 4.85750 4.91402 4.96943 4.99571 5.08489 5.16737 5.19603 5.21600 5.32018 5.37822 5.43947 5.50653 5.58831 5.75625 5.90660 5.95132 6.11692 6.54143 6.58426 6.81750 6.87134 8.26408 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.004581 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.567173 B = 6110.655839 C = 6796.455270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.079 3.921 4 H 0.090 0.910 5 C 0.089 3.911 6 N -0.978 5.978 7 S 2.702 3.298 8 O -0.991 6.991 9 O -0.987 6.987 10 C -0.633 4.633 11 C -0.144 4.144 12 C -0.123 4.123 13 C -0.142 4.142 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.078 0.922 17 C 0.040 3.960 18 N -0.822 5.822 19 Si 0.981 3.019 20 H -0.266 1.266 21 H -0.262 1.262 22 H -0.258 1.258 23 C -0.135 4.135 24 C 0.111 3.889 25 C -0.191 4.191 26 C 0.069 3.931 27 O -0.381 6.381 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.291 0.709 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 -2.735 -14.044 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.019 3.981 4 H 0.107 0.893 5 C -0.035 4.035 6 N -0.817 5.817 7 S 2.796 3.204 8 O -0.981 6.981 9 O -0.978 6.978 10 C -0.721 4.721 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.063 3.937 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.187 1.187 22 H -0.182 1.182 23 C -0.156 4.156 24 C -0.015 4.015 25 C -0.230 4.230 26 C -0.008 4.008 27 O -0.299 6.299 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.138 0.862 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.923 -2.875 -14.097 15.559 hybrid contribution -0.361 0.619 1.634 1.784 sum -6.284 -2.256 -12.463 14.139 Atomic orbital electron populations 1.21658 0.94670 1.02073 1.01781 1.21726 0.97172 0.94060 1.03343 1.22661 0.91885 0.95511 0.88045 0.89259 1.22919 0.95880 0.83061 1.01642 1.56934 1.45065 1.12694 1.66997 1.01358 0.73520 0.72106 0.73444 1.93469 1.75036 1.42952 1.86688 1.93471 1.73170 1.47091 1.84028 1.30251 1.18095 0.99697 1.24085 1.20326 1.05323 0.94597 0.96204 1.21073 1.00424 0.98067 0.94658 1.21598 1.02448 0.92455 0.99629 1.17985 0.90323 0.93932 0.91434 1.19788 1.26162 0.96738 1.10010 0.90402 1.26708 0.92103 0.99157 0.99603 1.69834 1.15179 1.31741 1.27976 0.85272 0.79282 0.78275 0.77065 1.18990 1.18665 1.18220 1.20702 1.05394 0.95312 0.94215 1.21592 0.97063 0.83048 0.99752 1.22266 0.98683 1.01803 1.00246 1.21459 0.95716 0.81116 1.02470 1.87569 1.87123 1.22764 1.32457 0.94050 0.91542 0.91862 0.88044 0.92633 0.87500 0.90455 0.85957 0.86083 0.87075 0.89858 0.87499 0.89252 0.86155 0.93205 0.87492 0.91211 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.81 71.98 0.71 -1.78 16 2 C -0.13 -2.34 5.54 30.60 0.17 -2.17 16 3 C 0.08 1.69 2.31 31.16 0.07 1.76 16 4 H 0.09 1.39 7.21 -2.39 -0.02 1.37 16 5 C 0.09 2.15 5.87 86.62 0.51 2.66 16 6 N -0.98 -28.88 2.84 -509.93 -1.45 -30.33 16 7 S 2.70 105.10 5.58 -56.49 -0.31 104.79 16 8 O -0.99 -42.28 15.69 -128.00 -2.01 -44.29 16 9 O -0.99 -40.43 15.97 -128.00 -2.04 -42.48 16 10 C -0.63 -28.92 5.77 22.22 0.13 -28.79 16 11 C -0.14 -6.52 9.53 22.46 0.21 -6.31 16 12 C -0.12 -5.81 10.02 22.22 0.22 -5.58 16 13 C -0.14 -7.47 8.70 22.73 0.20 -7.27 16 14 C 0.07 3.61 5.58 -21.29 -0.12 3.49 16 15 C -0.50 -26.71 9.05 23.46 0.21 -26.49 16 16 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 17 C 0.04 1.98 5.14 85.26 0.44 2.41 16 18 N -0.82 -42.06 10.95 21.83 0.24 -41.82 16 19 Si 0.98 37.63 29.59 68.60 2.03 39.66 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.14 -6.80 7.52 22.73 0.17 -6.62 16 24 C 0.11 2.75 5.65 87.40 0.49 3.25 16 25 C -0.19 -5.30 6.03 29.57 0.18 -5.12 16 26 C 0.07 1.75 6.04 70.32 0.42 2.17 16 27 O -0.38 -11.26 9.38 -144.93 -1.36 -12.62 16 28 H 0.04 0.89 7.82 -2.39 -0.02 0.87 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.09 7.10 -2.39 -0.02 2.08 16 35 H 0.12 4.96 7.60 -2.91 -0.02 4.94 16 36 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 37 H 0.11 6.01 6.15 -2.91 -0.02 6.00 16 38 H 0.29 13.44 8.30 -92.70 -0.77 12.67 16 39 H 0.11 5.23 7.57 -2.91 -0.02 5.21 16 40 H 0.09 2.36 6.80 -2.39 -0.02 2.34 16 41 H 0.12 1.96 8.10 -2.38 -0.02 1.94 16 42 H 0.05 1.86 6.01 -2.38 -0.01 1.85 16 43 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 1.39 7.28 -2.39 -0.02 1.38 16 Total: -1.00 -68.49 366.77 0.10 -68.39 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.99 Total: 33.08 kcal Atomic # 6 Polarization: -78.40 SS G_CDS: 4.02 Total: -74.38 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.21 Total: -72.16 kcal Atomic # 8 Polarization: -93.97 SS G_CDS: -5.41 Total: -99.38 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 16 Polarization: 105.10 SS G_CDS: -0.31 Total: 104.79 kcal Total: -68.49 0.10 -68.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619598189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.483 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds