Wall clock time and date at job start Tue Mar 31 2020 23:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00012 * 2 1 4 4 H 1.08997 * 109.44822 * 29.97414 * 3 2 1 5 5 C 1.53032 * 109.46377 * 270.00628 * 3 2 1 6 6 C 1.53187 * 109.31570 * 178.61405 * 5 3 2 7 7 N 1.46930 * 108.77407 * 54.63689 * 6 5 3 8 8 S 1.65596 * 120.63236 * 126.37162 * 7 6 5 9 9 O 1.42106 * 106.40376 * 23.56218 * 8 7 6 10 10 O 1.42100 * 106.40384 * 156.48142 * 8 7 6 11 11 C 1.76203 * 107.21902 * 270.01985 * 8 7 6 12 12 C 1.38654 * 119.87099 * 89.99947 * 11 8 7 13 13 C 1.38623 * 120.49680 * 179.97438 * 12 11 8 14 14 C 1.37636 * 120.24599 * 0.02562 * 13 12 11 15 15 C 1.40690 * 119.74646 * 359.97438 * 14 13 12 16 16 C 1.41398 * 120.24558 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00565 * 155.18936 * 16 15 14 18 18 C 1.39947 * 119.99757 * 335.19160 * 16 15 14 19 19 N 1.30828 * 119.99963 * 342.32662 * 18 16 15 20 20 Si 1.86794 * 120.00163 * 162.32215 * 18 16 15 21 21 H 1.48500 * 109.47073 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47401 * 120.00062 * 20 18 16 23 23 H 1.48503 * 109.47580 * 240.00208 * 20 18 16 24 24 C 1.37589 * 119.87550 * 269.72557 * 11 8 7 25 25 C 1.46923 * 118.73654 * 306.39000 * 7 6 5 26 26 H 1.08999 * 109.58732 * 173.39870 * 25 7 6 27 27 C 1.53003 * 109.59044 * 293.82476 * 25 7 6 28 28 C 1.53037 * 109.45819 * 149.93642 * 3 2 1 29 29 H 1.09004 * 109.46692 * 299.99566 * 1 2 3 30 30 H 1.08998 * 109.47794 * 59.98973 * 1 2 3 31 31 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.50026 * 58.65958 * 5 3 2 33 33 H 1.09004 * 109.49667 * 298.57003 * 5 3 2 34 34 H 1.09004 * 109.58855 * 294.84665 * 6 5 3 35 35 H 1.09003 * 109.70802 * 174.49409 * 6 5 3 36 36 H 1.07999 * 119.75748 * 359.95615 * 12 11 8 37 37 H 1.07997 * 119.87056 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.11930 * 179.97438 * 14 13 12 39 39 H 0.97006 * 119.99830 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.12956 * 0.02562 * 24 11 8 41 41 H 1.08998 * 109.46789 * 59.99631 * 27 25 7 42 42 H 1.09000 * 109.47337 * 180.02562 * 27 25 7 43 43 H 1.09001 * 109.46690 * 300.00085 * 27 25 7 44 44 H 1.09005 * 109.49996 * 61.43907 * 28 3 2 45 45 H 1.08998 * 109.50257 * 301.34037 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 1.9992 0.5135 5 6 2.2175 1.7714 -1.4429 6 6 2.8084 3.1847 -1.4390 7 7 4.0308 3.1839 -0.6237 8 16 5.4584 3.7501 -1.2430 9 8 5.1142 4.6411 -2.2952 10 8 6.2550 4.1326 -0.1301 11 6 6.2786 2.3843 -1.9959 12 6 6.0512 2.0936 -3.3324 13 6 6.6899 1.0226 -3.9379 14 6 7.5578 0.2349 -3.2163 15 6 7.7961 0.5206 -1.8595 16 6 8.6860 -0.2814 -1.1084 17 1 9.1784 0.1275 -0.2384 18 6 8.9290 -1.6050 -1.4924 19 7 8.1049 -2.2114 -2.3077 20 14 10.4301 -2.5059 -0.8410 21 1 11.1964 -1.6057 0.0576 22 1 9.9964 -3.7078 -0.0843 23 1 11.2906 -2.9208 -1.9780 24 6 7.1464 1.6139 -1.2568 25 6 3.9624 2.6708 0.7513 26 1 4.9653 2.6297 1.1762 27 6 3.0806 3.5903 1.5987 28 6 3.3584 1.2633 0.7229 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8898 31 1 -0.3634 -1.0277 0.0005 32 1 1.2601 1.7788 -1.9639 33 1 2.9027 1.0919 -1.9497 34 1 2.0861 3.8817 -1.0140 35 1 3.0496 3.4851 -2.4588 36 1 5.3712 2.7060 -3.9060 37 1 6.5057 0.8056 -4.9797 38 1 8.0540 -0.5993 -3.6900 39 1 8.2735 -3.1287 -2.5742 40 1 7.3251 1.8445 -0.2169 41 1 2.0773 3.6237 1.1741 42 1 3.0316 3.2082 2.6183 43 1 3.5052 4.5941 1.6072 44 1 4.0330 0.5886 0.1956 45 1 3.2132 0.9091 1.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619682943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:16 Heat of formation + Delta-G solvation = -126.799524 kcal Electronic energy + Delta-G solvation = -28787.234867 eV Core-core repulsion = 24895.286762 eV Total energy + Delta-G solvation = -3891.948106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.47853 -39.45241 -38.36391 -37.94897 -36.92924 -35.67936 -33.20107 -32.48003 -31.92782 -31.60063 -28.70412 -27.35920 -27.17138 -24.65113 -23.67836 -23.62615 -22.80277 -21.23231 -20.02001 -19.33688 -18.74077 -17.76607 -17.51849 -17.16657 -16.80480 -16.53719 -16.07015 -15.99935 -15.79267 -15.26379 -15.13575 -14.99830 -14.65742 -14.36062 -14.24684 -14.11859 -13.72683 -13.59109 -13.34394 -13.17174 -13.09049 -13.05873 -12.99013 -12.82341 -12.64716 -12.58957 -12.48641 -12.23540 -12.21727 -12.06284 -11.81131 -11.56144 -11.33804 -11.20443 -11.15712 -10.42915 -10.10847 -9.80962 -9.57061 -8.74495 -6.46610 -0.55217 0.39927 0.82699 1.36021 1.43123 1.51370 2.00585 2.16631 2.54894 2.71324 2.87478 3.32551 3.48804 3.60653 3.83462 4.02790 4.05566 4.23146 4.26749 4.27518 4.40070 4.43806 4.46342 4.56531 4.59543 4.64577 4.73992 4.79353 4.81713 4.88261 4.91483 4.97829 5.01198 5.05474 5.13625 5.19084 5.23938 5.31892 5.39918 5.45510 5.54634 5.68878 5.86965 5.92374 6.08771 6.37146 6.51134 6.78491 6.83406 8.23782 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.004387 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.524921 B = 6381.434130 C = 7403.098386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.096 3.904 4 H 0.094 0.906 5 C -0.155 4.155 6 C 0.120 3.880 7 N -0.988 5.988 8 S 2.710 3.290 9 O -0.982 6.982 10 O -0.989 6.989 11 C -0.639 4.639 12 C -0.149 4.149 13 C -0.123 4.123 14 C -0.142 4.142 15 C 0.064 3.936 16 C -0.498 4.498 17 H 0.078 0.922 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.144 4.144 25 C 0.146 3.854 26 H 0.087 0.913 27 C -0.157 4.157 28 C -0.126 4.126 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 4.866 4.813 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.039 3.961 4 H 0.112 0.888 5 C -0.195 4.195 6 C -0.005 4.005 7 N -0.827 5.827 8 S 2.804 3.196 9 O -0.972 6.972 10 O -0.979 6.979 11 C -0.728 4.728 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.061 3.939 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.165 4.165 25 C 0.041 3.959 26 H 0.105 0.895 27 C -0.215 4.215 28 C -0.166 4.166 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.747 5.357 4.740 16.390 hybrid contribution 0.964 -1.414 -0.341 1.745 sum -13.782 3.943 4.399 14.995 Atomic orbital electron populations 1.22968 0.79635 1.03484 1.01085 1.87943 1.21456 1.28782 1.95170 1.22099 0.94368 0.84570 0.95064 0.88849 1.22414 1.02301 0.96617 0.98118 1.21624 0.85769 0.97325 0.95746 1.57724 1.23223 1.80040 1.21753 1.01129 0.72445 0.73637 0.72362 1.93479 1.83773 1.62278 1.57688 1.93484 1.69300 1.82027 1.53098 1.30381 1.14894 1.21824 1.05661 1.20421 1.03898 0.99535 0.93114 1.21133 0.97867 0.95646 0.99559 1.21613 1.00341 1.00142 0.94079 1.18034 0.91425 0.91812 0.92616 1.19875 1.23740 0.96932 1.12120 0.90364 1.26745 0.99144 0.98003 0.93838 1.69831 1.33771 1.13255 1.27929 0.85149 0.77390 0.78004 0.79178 1.18246 1.18825 1.18634 1.20811 0.99062 0.98592 0.98055 1.21116 1.01365 0.93139 0.80309 0.89475 1.22169 1.00164 0.99084 1.00101 1.21965 0.96302 0.96211 1.02076 0.92482 0.93007 0.89343 0.88350 0.93269 0.87525 0.89087 0.85247 0.85678 0.87012 0.89768 0.87398 0.90096 0.89309 0.92208 0.93682 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.61 16 2 O -0.41 -10.40 10.35 -148.98 -1.54 -11.94 16 3 C 0.10 2.13 2.36 30.62 0.07 2.21 16 4 H 0.09 1.48 6.13 -2.39 -0.01 1.46 16 5 C -0.16 -3.56 5.69 30.67 0.17 -3.39 16 6 C 0.12 2.73 5.97 86.36 0.52 3.24 16 7 N -0.99 -28.64 3.00 -490.76 -1.47 -30.11 16 8 S 2.71 102.27 5.69 -56.49 -0.32 101.95 16 9 O -0.98 -38.56 15.98 -128.00 -2.05 -40.61 16 10 O -0.99 -41.54 15.97 -128.00 -2.04 -43.59 16 11 C -0.64 -28.68 5.97 22.22 0.13 -28.55 16 12 C -0.15 -6.53 9.53 22.46 0.21 -6.31 16 13 C -0.12 -5.65 10.02 22.22 0.22 -5.42 16 14 C -0.14 -7.41 8.70 22.73 0.20 -7.21 16 15 C 0.06 3.50 5.57 -21.29 -0.12 3.38 16 16 C -0.50 -26.88 9.05 23.46 0.21 -26.67 16 17 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 18 C 0.04 1.90 5.14 85.26 0.44 2.34 16 19 N -0.82 -42.18 10.97 21.83 0.24 -41.94 16 20 Si 0.98 37.81 29.59 68.60 2.03 39.84 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 24 C -0.14 -7.27 9.26 22.73 0.21 -7.06 16 25 C 0.15 3.81 3.15 44.98 0.14 3.95 16 26 H 0.09 2.58 7.12 -2.39 -0.02 2.57 16 27 C -0.16 -2.83 9.03 71.98 0.65 -2.18 16 28 C -0.13 -3.32 5.20 30.67 0.16 -3.16 16 29 H 0.06 0.70 8.08 -2.38 -0.02 0.68 16 30 H 0.05 0.69 7.85 -2.39 -0.02 0.67 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.72 7.85 -2.39 -0.02 1.70 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.69 7.50 -2.38 -0.02 1.68 16 35 H 0.09 2.16 7.12 -2.39 -0.02 2.14 16 36 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 37 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.11 5.98 6.18 -2.91 -0.02 5.97 16 39 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 40 H 0.11 5.29 7.60 -2.91 -0.02 5.27 16 41 H 0.08 1.11 5.72 -2.39 -0.01 1.10 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.46 370.20 0.28 -68.18 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.99 Total: 31.42 kcal Atomic # 6 Polarization: -77.66 SS G_CDS: 4.45 Total: -73.21 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.23 Total: -72.05 kcal Atomic # 8 Polarization: -90.51 SS G_CDS: -5.63 Total: -96.14 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Atomic # 16 Polarization: 102.27 SS G_CDS: -0.32 Total: 101.95 kcal Total: -68.46 0.28 -68.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619682943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.619 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds