Wall clock time and date at job start Tue Mar 31 2020 23:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00173 * 2 1 4 4 H 1.09003 * 109.45894 * 330.03253 * 3 2 1 5 5 C 1.53039 * 109.45799 * 90.00156 * 3 2 1 6 6 C 1.53191 * 109.31471 * 181.36942 * 5 3 2 7 7 N 1.46924 * 108.77820 * 305.36825 * 6 5 3 8 8 S 1.65594 * 120.63210 * 233.58448 * 7 6 5 9 9 O 1.42103 * 106.40384 * 17.21335 * 8 7 6 10 10 O 1.42097 * 106.40300 * 150.13338 * 8 7 6 11 11 C 1.76202 * 107.21899 * 263.67216 * 8 7 6 12 12 C 1.38661 * 119.87499 * 269.72823 * 11 8 7 13 13 C 1.38611 * 120.49599 * 179.71909 * 12 11 8 14 14 C 1.37639 * 120.25164 * 0.55520 * 13 12 11 15 15 C 1.40698 * 119.74204 * 359.71950 * 14 13 12 16 16 C 1.41397 * 120.24107 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99973 * 205.00699 * 16 15 14 18 18 C 1.39947 * 120.00149 * 25.00701 * 16 15 14 19 19 N 1.30825 * 119.99959 * 16.92635 * 18 16 15 20 20 Si 1.86802 * 119.99912 * 196.92433 * 18 16 15 21 21 H 1.48497 * 109.46992 * 60.00194 * 20 18 16 22 22 H 1.48498 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47096 * 300.00020 * 20 18 16 24 24 C 1.37594 * 119.87541 * 89.99874 * 11 8 7 25 25 C 1.46928 * 118.73855 * 53.60387 * 7 6 5 26 26 H 1.09000 * 109.58687 * 66.17599 * 25 7 6 27 27 C 1.52991 * 109.70561 * 186.53512 * 25 7 6 28 28 C 1.53039 * 109.45130 * 210.06146 * 3 2 1 29 29 H 1.09000 * 109.46849 * 299.99309 * 1 2 3 30 30 H 1.08995 * 109.46866 * 59.99488 * 1 2 3 31 31 H 1.09000 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.50106 * 301.32859 * 5 3 2 33 33 H 1.09008 * 109.49735 * 61.42204 * 5 3 2 34 34 H 1.09007 * 109.58461 * 65.15333 * 6 5 3 35 35 H 1.08996 * 109.58914 * 185.57527 * 6 5 3 36 36 H 1.07992 * 119.74818 * 359.97438 * 12 11 8 37 37 H 1.08004 * 119.87592 * 180.27513 * 13 12 11 38 38 H 1.08004 * 120.12698 * 179.70514 * 14 13 12 39 39 H 0.96999 * 119.99987 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.13010 * 0.02562 * 24 11 8 41 41 H 1.09007 * 109.47382 * 189.38126 * 27 25 7 42 42 H 1.09003 * 109.47387 * 309.38563 * 27 25 7 43 43 H 1.08999 * 109.46944 * 69.38633 * 27 25 7 44 44 H 1.08996 * 109.49847 * 298.57748 * 28 3 2 45 45 H 1.09000 * 109.49413 * 58.67370 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3446 1.9993 -0.5134 5 6 2.2177 1.7711 1.4430 6 6 2.8091 3.1843 1.4393 7 7 4.0313 3.1833 0.6239 8 16 5.4589 3.7501 1.2428 9 8 5.2996 3.7822 2.6546 10 8 6.4939 3.0243 0.5939 11 6 5.6244 5.4254 0.7225 12 6 6.2688 5.7178 -0.4699 13 6 6.4011 7.0306 -0.8944 14 6 5.9030 8.0604 -0.1290 15 6 5.2523 7.7759 1.0855 16 6 4.7371 8.8257 1.8804 17 1 4.6120 8.6863 2.9440 18 6 4.3893 10.0454 1.2889 19 7 4.2211 10.1198 -0.0064 20 14 4.1651 11.5671 2.3488 21 1 5.4326 11.8636 3.0635 22 1 3.8003 12.7207 1.4878 23 1 3.0837 11.3267 3.3377 24 6 5.1187 6.4388 1.5038 25 6 3.9628 2.6704 -0.7512 26 1 3.3347 3.3256 -1.3547 27 6 5.3691 2.6128 -1.3509 28 6 3.3585 1.2630 -0.7229 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2603 1.7787 1.9641 33 1 2.9028 1.0914 1.9497 34 1 2.0869 3.8815 1.0143 35 1 3.0507 3.4820 2.4596 36 1 6.6669 4.9163 -1.0744 37 1 6.9010 7.2467 -1.8271 38 1 6.0115 9.0830 -0.4594 39 1 3.9804 10.9652 -0.4164 40 1 4.6213 6.2092 2.4345 41 1 5.3010 2.3931 -2.4165 42 1 5.8643 3.5734 -1.2089 43 1 5.9439 1.8308 -0.8548 44 1 4.0328 0.5880 -0.1958 45 1 3.2131 0.9089 -1.7434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619682944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:20 Heat of formation + Delta-G solvation = -108.645481 kcal Electronic energy + Delta-G solvation = -28473.727599 eV Core-core repulsion = 24582.566712 eV Total energy + Delta-G solvation = -3891.160887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.36030 -39.46700 -38.61266 -37.88734 -36.88816 -35.67859 -33.46821 -32.53366 -31.92564 -31.57947 -28.45129 -27.42688 -27.12012 -24.77205 -23.61568 -23.15854 -22.81136 -21.64674 -20.27275 -19.32785 -18.16373 -17.85113 -17.40628 -17.34264 -16.90097 -16.54683 -16.18199 -16.05128 -16.00312 -15.45358 -15.23043 -15.02242 -14.49520 -14.26252 -14.21762 -14.12562 -13.73575 -13.52166 -13.42840 -13.29355 -13.11626 -13.04051 -12.85003 -12.78839 -12.65702 -12.53763 -12.25126 -12.22118 -12.05602 -11.93811 -11.55834 -11.51409 -11.25840 -11.21283 -11.11065 -10.44942 -10.09005 -9.80593 -9.55463 -8.72996 -6.46121 -0.52561 0.41029 0.84281 1.36883 1.45973 1.49384 2.03419 2.17079 2.56989 2.76172 2.81089 3.38496 3.47593 3.59313 3.81257 3.98858 4.04411 4.21974 4.25780 4.32375 4.32799 4.42866 4.48537 4.57663 4.59986 4.71579 4.75738 4.81197 4.85944 4.88018 4.92417 4.93301 5.01143 5.09726 5.16157 5.18133 5.20024 5.33000 5.40663 5.55312 5.58039 5.72815 5.89762 5.93781 6.10195 6.30655 6.51995 6.79297 6.84215 8.24573 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003457 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.516813 B = 8097.586297 C = 8805.659179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.090 3.910 4 H 0.078 0.922 5 C -0.147 4.147 6 C 0.112 3.888 7 N -0.992 5.992 8 S 2.707 3.293 9 O -0.998 6.998 10 O -0.972 6.972 11 C -0.638 4.638 12 C -0.149 4.149 13 C -0.123 4.123 14 C -0.141 4.141 15 C 0.064 3.936 16 C -0.500 4.500 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.821 5.821 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.146 4.146 25 C 0.154 3.846 26 H 0.091 0.909 27 C -0.191 4.191 28 C -0.118 4.118 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -12.744 -4.054 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.033 3.967 4 H 0.096 0.904 5 C -0.186 4.186 6 C -0.012 4.012 7 N -0.832 5.832 8 S 2.802 3.198 9 O -0.989 6.989 10 O -0.963 6.963 11 C -0.727 4.727 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.161 4.161 15 C 0.061 3.939 16 C -0.529 4.529 17 H 0.096 0.904 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.168 4.168 25 C 0.049 3.951 26 H 0.109 0.891 27 C -0.249 4.249 28 C -0.157 4.157 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.892 -13.224 -3.720 15.370 hybrid contribution -0.395 1.837 0.243 1.895 sum -7.287 -11.387 -3.477 13.959 Atomic orbital electron populations 1.22971 0.79779 1.03679 1.00816 1.87888 1.21197 1.28057 1.95157 1.22096 0.94967 0.84676 0.94978 0.90431 1.22348 1.02327 0.95619 0.98309 1.21592 0.85775 0.98175 0.95701 1.57668 1.25186 1.76764 1.23554 1.01269 0.73081 0.73452 0.71964 1.93451 1.86357 1.87914 1.31134 1.93610 1.56761 1.70543 1.75366 1.30343 1.13476 1.22399 1.06455 1.20622 1.03556 0.97143 0.95645 1.21166 1.00328 0.93046 0.99635 1.21655 0.98806 0.98838 0.96802 1.18024 0.90485 0.92270 0.93138 1.19831 1.39360 0.97664 0.96063 0.90441 1.26710 0.91604 1.02869 0.96467 1.69800 1.33311 1.28957 1.12622 0.85247 0.79825 0.75965 0.78721 1.18688 1.18844 1.18338 1.20826 1.03639 0.92657 0.99633 1.21170 0.98634 0.94943 0.80313 0.89134 1.22878 0.94177 1.04825 1.02975 1.21989 0.95445 0.95849 1.02464 0.93352 0.93087 0.88625 0.88671 0.91714 0.89712 0.89354 0.84310 0.85454 0.86873 0.89725 0.87529 0.88777 0.91911 0.89924 0.91485 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -8.18 10.35 -148.98 -1.54 -9.72 16 3 C 0.09 1.78 2.57 30.62 0.08 1.86 16 4 H 0.08 1.31 7.79 -2.39 -0.02 1.30 16 5 C -0.15 -3.11 5.69 30.67 0.17 -2.94 16 6 C 0.11 2.89 6.50 86.36 0.56 3.45 16 7 N -0.99 -29.25 3.29 -490.79 -1.61 -30.86 16 8 S 2.71 101.72 5.27 -56.49 -0.30 101.42 16 9 O -1.00 -42.62 15.71 -128.00 -2.01 -44.63 16 10 O -0.97 -37.03 12.56 -128.00 -1.61 -38.64 16 11 C -0.64 -27.84 5.96 22.22 0.13 -27.71 16 12 C -0.15 -6.25 8.86 22.46 0.20 -6.05 16 13 C -0.12 -5.40 10.02 22.22 0.22 -5.17 16 14 C -0.14 -7.15 8.69 22.73 0.20 -6.95 16 15 C 0.06 3.40 5.57 -21.29 -0.12 3.29 16 16 C -0.50 -26.46 9.06 23.46 0.21 -26.25 16 17 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 18 C 0.04 1.90 5.16 85.26 0.44 2.34 16 19 N -0.82 -40.83 10.94 21.83 0.24 -40.59 16 20 Si 0.98 36.92 29.59 68.60 2.03 38.95 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 24 C -0.15 -7.23 9.26 22.73 0.21 -7.02 16 25 C 0.15 3.74 3.51 44.97 0.16 3.90 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 27 C -0.19 -4.91 7.56 71.98 0.54 -4.36 16 28 C -0.12 -2.45 5.01 30.67 0.15 -2.29 16 29 H 0.05 0.59 7.85 -2.39 -0.02 0.57 16 30 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.63 7.85 -2.39 -0.02 1.61 16 33 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 2.50 6.78 -2.39 -0.02 2.48 16 36 H 0.14 5.00 5.44 -2.91 -0.02 4.98 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.11 5.88 6.17 -2.91 -0.02 5.86 16 39 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 40 H 0.11 5.15 7.60 -2.91 -0.02 5.13 16 41 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.06 1.87 2.88 -2.39 -0.01 1.87 16 43 H 0.08 2.32 6.57 -2.39 -0.02 2.30 16 44 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.47 361.50 0.59 -63.88 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 1.00 Total: 32.56 kcal Atomic # 6 Polarization: -76.76 SS G_CDS: 4.39 Total: -72.36 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.38 Total: -71.45 kcal Atomic # 8 Polarization: -87.83 SS G_CDS: -5.16 Total: -92.99 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 101.72 SS G_CDS: -0.30 Total: 101.42 kcal Total: -64.47 0.59 -63.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619682944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.765 kcal (2) G-P(sol) polarization free energy of solvation -64.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds