Wall clock time and date at job start Tue Mar 31 2020 23:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99909 * 2 1 4 4 H 1.09004 * 109.46079 * 329.97040 * 3 2 1 5 5 C 1.53038 * 109.46199 * 89.93156 * 3 2 1 6 6 C 1.52764 * 109.38502 * 181.26138 * 5 3 2 7 7 N 1.46930 * 109.00663 * 305.58855 * 6 5 3 8 8 S 1.65600 * 120.63080 * 233.58680 * 7 6 5 9 9 O 1.42097 * 106.40423 * 156.18036 * 8 7 6 10 10 O 1.42104 * 106.40282 * 23.25696 * 8 7 6 11 11 C 1.76199 * 107.21336 * 269.71884 * 8 7 6 12 12 C 1.38657 * 119.87643 * 90.00509 * 11 8 7 13 13 C 1.38620 * 120.50146 * 179.97438 * 12 11 8 14 14 C 1.37634 * 120.24990 * 0.02562 * 13 12 11 15 15 C 1.40697 * 119.74157 * 359.97438 * 14 13 12 16 16 C 1.41401 * 120.24144 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99711 * 155.08203 * 16 15 14 18 18 C 1.39942 * 120.00305 * 335.08706 * 16 15 14 19 19 N 1.30824 * 119.99537 * 342.57902 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 162.57397 * 18 16 15 21 21 H 1.48496 * 109.47083 * 84.99301 * 20 18 16 22 22 H 1.48505 * 109.47274 * 324.99381 * 20 18 16 23 23 H 1.48501 * 109.47143 * 204.99302 * 20 18 16 24 24 C 1.37597 * 119.87717 * 270.32232 * 11 8 7 25 25 C 1.46932 * 118.73775 * 53.30936 * 7 6 5 26 26 H 1.08998 * 109.58341 * 186.85577 * 25 7 6 27 27 C 1.52996 * 109.58441 * 66.57176 * 25 7 6 28 28 C 1.53039 * 109.45910 * 210.00203 * 3 2 1 29 29 H 1.09004 * 109.47296 * 299.99980 * 1 2 3 30 30 H 1.08996 * 109.47522 * 59.99673 * 1 2 3 31 31 H 1.08997 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.49755 * 301.33635 * 5 3 2 33 33 H 1.08998 * 109.49439 * 61.40247 * 5 3 2 34 34 H 1.08997 * 109.50991 * 185.70700 * 6 5 3 35 35 H 1.08999 * 109.43047 * 65.41918 * 6 5 3 36 36 H 1.08004 * 119.75137 * 0.02562 * 12 11 8 37 37 H 1.07997 * 119.87276 * 180.02562 * 13 12 11 38 38 H 1.08000 * 120.12832 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99747 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.12876 * 359.97438 * 24 11 8 41 41 H 1.08997 * 109.46853 * 60.00372 * 27 25 7 42 42 H 1.09000 * 109.46454 * 179.97438 * 27 25 7 43 43 H 1.08997 * 109.47356 * 300.00150 * 27 25 7 44 44 H 1.08997 * 109.50127 * 58.66128 * 28 3 2 45 45 H 1.09001 * 109.49763 * 298.56700 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9991 -0.5143 5 6 2.2160 1.7720 1.4429 6 6 2.8082 3.1802 1.4410 7 7 4.0301 3.1843 0.6250 8 16 5.4572 3.7507 1.2455 9 8 6.4941 3.1339 0.4947 10 8 5.3511 3.6432 2.6585 11 6 5.5367 5.4729 0.8821 12 6 5.0182 6.3931 1.7804 13 6 5.0743 7.7510 1.5079 14 6 5.6463 8.2007 0.3396 15 6 6.1756 7.2761 -0.5794 16 6 6.7661 7.7264 -1.7827 17 1 7.5046 7.1172 -2.2829 18 6 6.3939 8.9614 -2.3255 19 7 5.2868 9.5398 -1.9365 20 14 7.4778 9.7840 -3.6052 21 1 7.1448 9.2527 -4.9513 22 1 8.9038 9.5028 -3.3008 23 1 7.2464 11.2507 -3.5809 24 6 6.1072 5.8994 -0.2952 25 6 3.9631 2.6706 -0.7500 26 1 4.9664 2.6292 -1.1738 27 6 3.0850 3.5916 -1.5993 28 6 3.3591 1.2630 -0.7215 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.2580 1.7796 1.9630 33 1 2.9003 1.0924 1.9508 34 1 3.0498 3.4749 2.4621 35 1 2.0845 3.8773 1.0187 36 1 4.5679 6.0492 2.6999 37 1 4.6677 8.4588 2.2150 38 1 5.6886 9.2591 0.1290 39 1 5.0286 10.3956 -2.3130 40 1 6.5063 5.1808 -0.9958 41 1 3.5120 4.5944 -1.6077 42 1 3.0370 3.2090 -2.6189 43 1 2.0809 3.6277 -1.1767 44 1 3.2149 0.9083 -1.7421 45 1 4.0331 0.5885 -0.1934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619682945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:24 Heat of formation + Delta-G solvation = -126.383505 kcal Electronic energy + Delta-G solvation = -28459.767263 eV Core-core repulsion = 24567.837197 eV Total energy + Delta-G solvation = -3891.930066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48749 -39.44350 -38.37432 -37.94147 -36.93306 -35.66376 -33.22213 -32.50403 -31.90900 -31.57448 -28.72428 -27.33956 -27.16855 -24.65700 -23.78990 -23.47913 -22.78323 -21.25245 -20.08729 -19.20991 -18.79565 -17.74756 -17.47872 -17.11751 -16.87548 -16.50509 -16.06738 -16.01669 -15.80077 -15.25118 -15.14830 -15.00328 -14.64710 -14.31286 -14.28263 -14.13750 -13.71223 -13.57805 -13.33011 -13.20494 -13.09696 -13.04469 -13.02192 -12.81786 -12.62619 -12.57759 -12.50636 -12.22703 -12.20405 -12.05751 -11.78188 -11.56947 -11.38974 -11.18421 -11.12759 -10.43063 -10.09884 -9.80357 -9.55113 -8.72759 -6.44900 -0.56296 0.40603 0.84767 1.37540 1.44468 1.51785 2.01138 2.17614 2.56700 2.74379 2.82381 3.31965 3.49810 3.61471 3.83316 4.04207 4.05896 4.22029 4.26005 4.29498 4.41375 4.43398 4.46916 4.58277 4.60079 4.66861 4.74589 4.78499 4.83722 4.90026 4.93199 4.97114 5.00364 5.05897 5.10545 5.20487 5.21325 5.30470 5.40958 5.45056 5.56420 5.68990 5.88648 5.93992 6.10345 6.32723 6.52638 6.80099 6.84925 8.24965 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.003477 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.392975 B = 8050.992695 C = 8719.762508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.091 3.909 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.114 3.886 7 N -0.989 5.989 8 S 2.708 3.292 9 O -0.992 6.992 10 O -0.984 6.984 11 C -0.636 4.636 12 C -0.148 4.148 13 C -0.122 4.122 14 C -0.141 4.141 15 C 0.065 3.935 16 C -0.498 4.498 17 H 0.078 0.922 18 C 0.040 3.960 19 N -0.820 5.820 20 Si 0.980 3.020 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.264 1.264 24 C -0.141 4.141 25 C 0.145 3.855 26 H 0.093 0.907 27 C -0.164 4.164 28 C -0.117 4.117 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.292 0.708 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.232 -10.907 0.909 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.011 4.011 7 N -0.828 5.828 8 S 2.804 3.196 9 O -0.982 6.982 10 O -0.975 6.975 11 C -0.725 4.725 12 C -0.169 4.169 13 C -0.141 4.141 14 C -0.161 4.161 15 C 0.062 3.938 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.801 3.199 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.189 1.189 24 C -0.162 4.162 25 C 0.039 3.961 26 H 0.111 0.889 27 C -0.222 4.222 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.653 -11.369 1.330 15.637 hybrid contribution 0.238 1.558 -0.744 1.743 sum -10.414 -9.811 0.587 14.320 Atomic orbital electron populations 1.22968 0.79753 1.03646 1.00862 1.87888 1.21223 1.28150 1.95171 1.22114 0.94676 0.84681 0.95171 0.90054 1.22280 1.02478 0.95910 0.98023 1.21532 0.85736 0.98178 0.95608 1.57668 1.25388 1.76755 1.23035 1.01089 0.72599 0.73515 0.72420 1.93477 1.55622 1.75883 1.73218 1.93472 1.86508 1.87190 1.30292 1.30288 1.13994 1.23930 1.04331 1.20434 1.04440 0.93065 0.98946 1.21130 1.00196 0.95682 0.97103 1.21635 1.01421 0.99662 0.93371 1.18012 0.91103 0.91402 0.93286 1.19826 1.21929 1.03945 1.06991 0.90429 1.26690 0.95188 0.96538 0.99152 1.69807 1.19587 1.16263 1.38931 0.85238 0.79093 0.77684 0.77916 1.18428 1.18621 1.18866 1.20811 1.03394 0.95895 0.96119 1.21120 1.01307 0.93456 0.80168 0.88874 1.22199 1.00515 0.99041 1.00467 1.21894 0.96008 0.95197 1.02531 0.93149 0.93143 0.88743 0.88349 0.91772 0.88741 0.89446 0.85213 0.85588 0.86926 0.89758 0.87399 0.93879 0.89538 0.90561 0.88405 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -8.11 10.35 -148.98 -1.54 -9.65 16 3 C 0.09 1.76 2.37 30.62 0.07 1.83 16 4 H 0.08 1.33 6.15 -2.39 -0.01 1.32 16 5 C -0.15 -2.92 5.68 30.53 0.17 -2.74 16 6 C 0.11 2.65 6.04 86.22 0.52 3.18 16 7 N -0.99 -28.94 3.00 -491.53 -1.47 -30.41 16 8 S 2.71 102.46 5.72 -56.49 -0.32 102.14 16 9 O -0.99 -42.17 15.86 -128.00 -2.03 -44.20 16 10 O -0.98 -39.18 15.85 -128.00 -2.03 -41.21 16 11 C -0.64 -27.76 5.96 22.22 0.13 -27.63 16 12 C -0.15 -6.27 9.53 22.46 0.21 -6.06 16 13 C -0.12 -5.39 10.02 22.22 0.22 -5.17 16 14 C -0.14 -7.12 8.69 22.73 0.20 -6.92 16 15 C 0.07 3.44 5.57 -21.29 -0.12 3.32 16 16 C -0.50 -26.12 9.05 23.46 0.21 -25.91 16 17 H 0.08 3.97 7.90 -2.91 -0.02 3.94 16 18 C 0.04 1.93 5.15 85.26 0.44 2.37 16 19 N -0.82 -40.54 10.96 21.83 0.24 -40.30 16 20 Si 0.98 36.75 29.59 68.60 2.03 38.78 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 24 C -0.14 -6.89 9.26 22.73 0.21 -6.68 16 25 C 0.14 3.80 3.24 44.97 0.15 3.95 16 26 H 0.09 2.72 6.92 -2.39 -0.02 2.70 16 27 C -0.16 -3.93 9.04 71.98 0.65 -3.27 16 28 C -0.12 -2.56 5.21 30.67 0.16 -2.40 16 29 H 0.05 0.56 7.84 -2.38 -0.02 0.54 16 30 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.48 7.84 -2.38 -0.02 1.46 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 2.27 6.91 -2.39 -0.02 2.25 16 35 H 0.09 1.74 7.52 -2.39 -0.02 1.72 16 36 H 0.13 4.78 7.60 -2.91 -0.02 4.76 16 37 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 38 H 0.11 5.83 6.18 -2.91 -0.02 5.82 16 39 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 40 H 0.11 5.14 7.61 -2.91 -0.02 5.12 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.53 5.76 -2.39 -0.01 1.52 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -64.90 369.80 0.32 -64.58 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.99 Total: 30.86 kcal Atomic # 6 Polarization: -75.05 SS G_CDS: 4.46 Total: -70.59 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.24 Total: -70.71 kcal Atomic # 8 Polarization: -89.46 SS G_CDS: -5.60 Total: -95.06 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Atomic # 16 Polarization: 102.46 SS G_CDS: -0.32 Total: 102.14 kcal Total: -64.90 0.32 -64.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619682945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.800 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds