Wall clock time and date at job start Tue Mar 31 2020 23:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46814 * 2 1 4 4 C 1.53003 * 109.46869 * 240.00020 * 2 1 3 5 5 C 1.53000 * 109.46635 * 175.00036 * 4 2 1 6 6 S 1.81400 * 109.46900 * 180.02562 * 5 4 2 7 7 C 1.81403 * 103.00089 * 180.02562 * 6 5 4 8 8 O 1.42095 * 109.47407 * 63.60888 * 6 5 4 9 9 N 1.46498 * 109.47187 * 119.99941 * 2 1 3 10 10 C 1.34773 * 119.99857 * 275.00553 * 9 2 1 11 11 O 1.21282 * 120.00258 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99855 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.38295 * 119.93466 * 269.73147 * 13 12 10 15 15 C 1.38100 * 120.07111 * 179.72756 * 14 13 12 16 16 C 1.38878 * 119.92709 * 0.56348 * 15 14 13 17 17 O 1.35752 * 120.06963 * 179.68513 * 16 15 14 18 18 C 1.34830 * 117.00104 * 174.48209 * 17 16 15 19 19 H 1.07999 * 120.00219 * 5.06638 * 18 17 16 20 20 C 1.38656 * 120.00128 * 185.05705 * 18 17 16 21 21 N 1.31562 * 119.99657 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47084 * 89.99866 * 22 20 18 24 24 H 1.48502 * 109.47084 * 210.00057 * 22 20 18 25 25 H 1.48504 * 109.47019 * 329.99984 * 22 20 18 26 26 C 1.38877 * 119.86369 * 359.70407 * 16 15 14 27 27 C 1.38104 * 119.93087 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47378 * 60.00112 * 1 2 3 30 30 H 1.08998 * 109.47132 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.47040 * 295.00040 * 4 2 1 32 32 H 1.08995 * 109.47107 * 55.00087 * 4 2 1 33 33 H 1.09000 * 109.47409 * 299.99778 * 5 4 2 34 34 H 1.08995 * 109.47332 * 60.00188 * 5 4 2 35 35 H 1.08995 * 109.46896 * 59.99820 * 7 6 5 36 36 H 1.08999 * 109.47156 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46836 * 299.99869 * 7 6 5 38 38 H 0.96999 * 120.00166 * 94.99535 * 9 2 1 39 39 H 1.09001 * 109.47002 * 299.99548 * 12 10 9 40 40 H 1.09006 * 109.47300 * 59.99672 * 12 10 9 41 41 H 1.08006 * 119.96468 * 359.97412 * 14 13 12 42 42 H 1.08003 * 120.03802 * 180.27038 * 15 14 13 43 43 H 0.97000 * 119.99235 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.03941 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.96661 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 16 4.1694 -1.4677 -2.7952 7 6 5.9656 -1.2340 -2.6967 8 8 3.6694 -0.8164 -3.9549 9 7 2.0184 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3571 11 8 1.8589 1.1586 2.4115 12 6 2.6488 -0.7288 3.5877 13 6 2.7001 0.2397 4.7412 14 6 3.8513 0.9678 4.9803 15 6 3.8995 1.8602 6.0332 16 6 2.7943 2.0175 6.8593 17 8 2.8407 2.8892 7.8989 18 6 1.6989 3.0783 8.5906 19 1 0.8245 2.4874 8.3614 20 6 1.6474 4.0312 9.5965 21 7 2.7126 4.7512 9.8756 22 14 0.0658 4.2927 10.5554 23 1 0.0529 3.3997 11.7418 24 1 -0.0156 5.7074 10.9997 25 1 -1.0972 3.9788 9.6869 26 6 1.6416 1.2808 6.6199 27 6 1.5977 0.3941 5.5620 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 6.3398 -1.6786 -1.7746 36 1 6.4420 -1.7149 -3.5510 37 1 6.1943 -0.1683 -2.7051 38 1 2.2490 -1.6317 1.1526 39 1 1.9759 -1.5506 3.8325 40 1 3.6480 -1.1213 3.3986 41 1 4.7123 0.8412 4.3406 42 1 4.7973 2.4317 6.2168 43 1 2.6764 5.4181 10.5790 44 1 0.7806 1.4006 7.2607 45 1 0.7017 -0.1794 5.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748367594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:54 Heat of formation + Delta-G solvation = -118.689006 kcal Electronic energy + Delta-G solvation = -25996.936659 eV Core-core repulsion = 22105.340252 eV Total energy + Delta-G solvation = -3891.596407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10110 -40.43506 -38.35818 -37.27813 -36.77895 -34.39706 -33.56549 -32.51398 -31.75800 -30.81140 -29.69904 -28.13137 -26.96215 -24.96669 -23.62108 -22.91035 -21.74409 -21.25269 -19.83610 -18.84972 -18.34335 -17.95130 -17.36185 -16.60356 -16.40102 -16.24016 -16.01365 -15.80150 -15.66446 -15.51409 -15.49673 -15.00879 -14.68747 -14.59217 -14.36453 -14.23622 -14.11326 -13.77003 -13.58755 -13.51425 -13.15529 -12.95582 -12.83201 -12.72739 -12.54219 -12.45454 -12.27837 -12.21545 -12.14432 -12.09581 -11.88125 -11.16932 -11.04948 -10.86116 -10.68415 -9.98755 -9.74486 -9.17932 -8.87794 -8.47794 -6.15794 0.63179 0.68828 0.70140 1.32872 1.42737 1.51005 1.79818 1.84233 2.17022 2.34652 2.86518 2.91336 3.19317 3.54027 3.77558 3.91480 3.95364 4.06035 4.08566 4.20558 4.29092 4.32111 4.40147 4.51862 4.52693 4.56996 4.61960 4.73838 4.78443 4.80724 4.83807 4.93191 5.08754 5.13637 5.15789 5.17496 5.19508 5.31992 5.33425 5.58743 5.66790 5.73187 5.80657 6.03028 6.26280 6.79318 6.96853 7.51658 7.78923 8.75758 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.001848 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.228311 B =15146.139396 C =15719.115642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.047 0.953 4 C -0.103 4.103 5 C -0.449 4.449 6 S 1.306 4.694 7 C -0.492 4.492 8 O -0.932 6.932 9 N -0.707 5.707 10 C 0.509 3.491 11 O -0.587 6.587 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.058 4.058 15 C -0.208 4.208 16 C 0.109 3.891 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.246 4.246 27 C -0.062 4.062 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.423 0.577 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.115 0.885 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -24.462 -23.662 34.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.065 0.935 4 C -0.141 4.141 5 C -0.587 4.587 6 S 1.506 4.494 7 C -0.651 4.651 8 O -0.928 6.928 9 N -0.362 5.362 10 C 0.296 3.704 11 O -0.466 6.466 12 C -0.116 4.116 13 C -0.144 4.144 14 C -0.076 4.076 15 C -0.228 4.228 16 C 0.059 3.941 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.265 4.265 27 C -0.080 4.080 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.078 0.922 38 H 0.262 0.738 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.842 -23.805 -24.153 33.923 hybrid contribution 0.207 3.131 0.764 3.230 sum 1.049 -20.674 -23.389 31.234 Atomic orbital electron populations 1.22167 0.95198 1.03406 1.01373 1.20802 0.93915 0.96276 0.84919 0.93508 1.21489 0.92444 1.04041 0.96169 1.27750 1.03180 1.09527 1.18211 1.69452 0.84697 1.13451 0.81750 1.27671 1.20389 1.06328 1.10709 1.93010 1.76120 1.78867 1.44778 1.45861 1.67329 1.14807 1.08194 1.21236 0.76679 0.86867 0.85577 1.90767 1.51250 1.19003 1.85615 1.20566 1.06201 0.96925 0.87942 1.19324 0.93892 1.02337 0.98874 1.20895 0.98660 0.93379 0.94673 1.20457 0.97719 1.05525 0.99074 1.19955 0.95459 0.90396 0.88263 1.83934 1.36218 1.55655 1.38403 1.21810 0.89680 1.21769 1.15673 0.88314 1.26628 1.03114 0.94494 0.98061 1.70195 1.31136 1.23135 1.31571 0.84574 0.75203 0.78324 0.78003 1.18376 1.19574 1.17939 1.21236 0.98669 1.03112 1.03462 1.20960 0.98300 0.95923 0.92773 0.89627 0.91601 0.94941 0.85704 0.91541 0.92267 0.83102 0.83452 0.87058 0.92196 0.73843 0.85071 0.84522 0.83413 0.87213 0.91869 0.86690 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.15 2.20 2.57 44.99 0.12 2.31 16 3 H 0.05 1.10 7.58 -2.39 -0.02 1.08 16 4 C -0.10 -0.84 4.76 30.60 0.15 -0.70 16 5 C -0.45 -3.19 5.81 71.98 0.42 -2.77 16 6 S 1.31 8.03 13.80 -56.49 -0.78 7.25 16 7 C -0.49 -2.58 10.74 113.37 1.22 -1.36 16 8 O -0.93 -21.49 18.14 -148.98 -2.70 -24.19 16 9 N -0.71 -8.22 4.53 -442.53 -2.00 -10.22 16 10 C 0.51 10.93 7.79 87.66 0.68 11.61 16 11 O -0.59 -20.78 15.70 -3.03 -0.05 -20.83 16 12 C -0.08 -1.29 5.83 29.10 0.17 -1.12 16 13 C -0.14 -4.38 4.38 -19.84 -0.09 -4.47 16 14 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 15 C -0.21 -9.40 9.99 22.39 0.22 -9.18 16 16 C 0.11 5.77 6.65 22.58 0.15 5.92 16 17 O -0.24 -14.86 9.76 -22.76 -0.22 -15.08 16 18 C -0.41 -25.14 9.49 67.92 0.64 -24.50 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 20 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 21 N -0.92 -58.41 13.67 21.61 0.30 -58.12 16 22 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 26 C -0.25 -11.34 9.17 22.39 0.21 -11.14 16 27 C -0.06 -2.20 9.69 22.25 0.22 -1.98 16 28 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.15 0.06 7.75 -2.39 -0.02 0.04 16 35 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.42 0.66 8.60 -92.71 -0.80 -0.14 16 39 H 0.13 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.14 1.22 8.08 -2.38 -0.02 1.20 16 41 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 45 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -102.32 394.70 2.23 -100.08 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.20 Total: 16.72 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 5.47 Total: -42.09 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.71 Total: -68.34 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -2.97 Total: -60.09 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -0.78 Total: 7.25 kcal Total: -102.32 2.23 -100.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748367594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.605 kcal (2) G-P(sol) polarization free energy of solvation -102.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds