Wall clock time and date at job start Tue Mar 31 2020 23:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.52995 * 109.47435 * 120.00005 * 2 1 3 5 5 C 1.53000 * 109.47514 * 185.00014 * 4 2 1 6 6 S 1.81401 * 109.47357 * 180.02562 * 5 4 2 7 7 C 1.81395 * 102.99828 * 180.02562 * 6 5 4 8 8 O 1.42096 * 109.46658 * 296.39145 * 6 5 4 9 9 N 1.46497 * 109.47212 * 240.00464 * 2 1 3 10 10 C 1.34779 * 119.99988 * 84.99736 * 9 2 1 11 11 O 1.21280 * 120.00032 * 0.02562 * 10 9 2 12 12 C 1.50701 * 120.00114 * 179.97438 * 10 9 2 13 13 C 1.50699 * 109.47440 * 180.02562 * 12 10 9 14 14 C 1.38301 * 119.92969 * 269.73067 * 13 12 10 15 15 C 1.38103 * 120.06923 * 179.72527 * 14 13 12 16 16 C 1.38885 * 119.92417 * 0.56413 * 15 14 13 17 17 O 1.35754 * 120.06226 * 179.68292 * 16 15 14 18 18 C 1.34834 * 116.99529 * 174.48858 * 17 16 15 19 19 H 1.07995 * 120.00045 * 5.05241 * 18 17 16 20 20 C 1.38659 * 119.99942 * 185.06218 * 18 17 16 21 21 N 1.31561 * 119.99612 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47354 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47155 * 119.99736 * 22 20 18 25 25 H 1.48504 * 109.46522 * 239.99212 * 22 20 18 26 26 C 1.38868 * 119.86683 * 359.70612 * 16 15 14 27 27 C 1.38102 * 119.93027 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47165 * 299.99418 * 1 2 3 29 29 H 1.09000 * 109.47602 * 60.00157 * 1 2 3 30 30 H 1.09007 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47045 * 65.00290 * 4 2 1 32 32 H 1.09001 * 109.47326 * 305.00973 * 4 2 1 33 33 H 1.09002 * 109.46316 * 59.99980 * 5 4 2 34 34 H 1.09001 * 109.47086 * 300.00716 * 5 4 2 35 35 H 1.09002 * 109.47014 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47435 * 300.00008 * 7 6 5 37 37 H 1.09007 * 109.47380 * 60.00187 * 7 6 5 38 38 H 0.96995 * 120.00125 * 264.99727 * 9 2 1 39 39 H 1.09000 * 109.46998 * 299.99987 * 12 10 9 40 40 H 1.09004 * 109.47060 * 59.99901 * 12 10 9 41 41 H 1.07994 * 119.96626 * 359.96993 * 14 13 12 42 42 H 1.07997 * 120.03684 * 180.27239 * 15 14 13 43 43 H 0.96996 * 119.99213 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.03749 * 179.97438 * 26 16 15 45 45 H 1.08003 * 119.96899 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 16 4.1697 -1.4690 2.7944 7 6 5.9656 -1.2337 2.6966 8 8 3.6696 -0.8187 3.9546 9 7 2.0183 -0.6905 -1.1962 10 6 2.1470 -0.0180 -2.3571 11 8 1.8590 1.1588 -2.4114 12 6 2.6499 -0.7282 -3.5875 13 6 2.7011 0.2403 -4.7410 14 6 1.6008 0.3902 -5.5655 15 6 1.6426 1.2811 -6.6199 16 6 2.7951 2.0182 -6.8589 17 8 2.8414 2.8900 -7.8985 18 6 3.9459 3.6559 -8.0063 19 1 4.7767 3.5030 -7.3335 20 6 4.0148 4.6399 -8.9808 21 7 3.0027 4.8258 -9.8005 22 14 5.5452 5.7005 -9.1305 23 1 6.5323 5.2936 -8.0985 24 1 6.1388 5.5251 -10.4803 25 1 5.1806 7.1262 -8.9315 26 6 3.9001 1.8614 -6.0326 27 6 3.8502 0.9729 -4.9765 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.7517 -1.7716 1.2055 32 1 1.6053 -0.2618 2.1369 33 1 3.8531 0.4371 1.3573 34 1 3.9995 -1.0727 0.4258 35 1 6.4421 -1.7153 3.5505 36 1 6.3405 -1.6770 1.7741 37 1 6.1935 -0.1678 2.7064 38 1 2.2491 -1.6316 -1.1527 39 1 3.6493 -1.1199 -3.3980 40 1 1.9777 -1.5506 -3.8327 41 1 0.7068 -0.1871 -5.3821 42 1 0.7816 1.4009 -7.2607 43 1 3.0511 5.5140 -10.4824 44 1 4.7979 2.4329 -6.2162 45 1 4.7091 0.8507 -4.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748367596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:59 Heat of formation + Delta-G solvation = -86.835647 kcal Electronic energy + Delta-G solvation = -26021.227984 eV Core-core repulsion = 22131.012842 eV Total energy + Delta-G solvation = -3890.215142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.95535 -38.84297 -36.94208 -36.16999 -36.06300 -32.75729 -32.35640 -31.30071 -30.13569 -30.02454 -29.33994 -26.61366 -25.13209 -24.34024 -21.94680 -21.80885 -20.77927 -20.08249 -17.94643 -17.89939 -17.08902 -16.92736 -16.56974 -15.75743 -15.26861 -15.20140 -15.10607 -14.61027 -14.46056 -14.23278 -13.90423 -13.83690 -13.67706 -13.55312 -13.29759 -13.26269 -13.00061 -12.67418 -12.50352 -12.45262 -12.32742 -11.95417 -11.80228 -11.62630 -11.49521 -11.26212 -11.23272 -10.82812 -10.72875 -10.57385 -10.45674 -10.39931 -9.66385 -9.29127 -9.15686 -8.79481 -8.69611 -8.11559 -7.12710 -6.41901 -4.00306 1.07229 2.16004 2.28286 2.29694 2.80318 3.12332 3.15430 3.21114 3.22652 3.34522 3.99360 4.30860 4.48252 4.51267 4.60387 4.66729 4.77871 5.00662 5.04906 5.11608 5.16522 5.20810 5.29371 5.34026 5.35657 5.36364 5.46044 5.52365 5.60635 5.68180 5.75196 5.85122 5.88658 6.02700 6.25083 6.43338 6.45355 6.73947 6.94986 7.09110 7.27500 7.40291 7.47252 7.50944 7.87747 8.03663 8.36755 9.04019 9.74969 10.76400 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.001982 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.520543 B =14122.168109 C =15121.871037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.105 4.105 5 C -0.448 4.448 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.854 6.854 9 N -0.735 5.735 10 C 0.508 3.492 11 O -0.519 6.519 12 C -0.080 4.080 13 C -0.169 4.169 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.233 4.233 27 C -0.057 4.057 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -19.829 21.846 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.144 4.144 5 C -0.585 4.585 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.389 5.389 10 C 0.295 3.705 11 O -0.393 6.393 12 C -0.120 4.120 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.231 0.769 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.093 -19.187 22.136 29.315 hybrid contribution 1.609 2.395 -0.053 2.886 sum 2.702 -16.792 22.083 27.874 Atomic orbital electron populations 1.22189 0.95192 1.02148 1.02812 1.20866 0.93920 0.97598 0.83576 0.89613 1.21486 0.92271 1.02019 0.98663 1.27698 1.03248 1.10921 1.16613 1.70367 0.85522 1.15802 0.84449 1.27634 1.21228 1.07358 1.08527 1.93143 1.73748 1.77403 1.40629 1.46165 1.69239 1.13796 1.09737 1.21070 0.77435 0.87722 0.84299 1.90752 1.48005 1.16019 1.84535 1.20412 1.02379 0.97909 0.91265 1.18633 0.95933 1.03748 0.98762 1.20398 0.96454 0.96940 0.94025 1.20162 0.97372 1.01797 1.01727 1.19382 0.93026 0.90020 0.87317 1.83980 1.41073 1.44212 1.38973 1.21371 0.93425 1.13700 1.18129 0.89064 1.25292 0.98919 0.96953 0.95457 1.70053 1.30129 1.31929 1.17727 0.85647 0.79877 0.79353 0.78539 1.19145 1.20162 1.20169 1.21101 1.00092 1.04530 0.99460 1.20492 0.96354 0.94781 0.95915 0.91857 0.91676 0.92345 0.90097 0.89999 0.89406 0.86294 0.87638 0.86821 0.90087 0.76936 0.89102 0.88980 0.87404 0.86568 0.92124 0.85645 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.27 2.57 -67.93 -0.17 1.09 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.11 -0.61 4.76 -26.73 -0.13 -0.73 16 5 C -0.45 -2.33 5.81 37.16 0.22 -2.12 16 6 S 1.24 5.49 13.80 -107.50 -1.48 4.01 16 7 C -0.49 -2.06 10.74 101.05 1.09 -0.97 16 8 O -0.85 -10.15 18.14 -35.23 -0.64 -10.79 16 9 N -0.74 -6.00 4.53 -53.81 -0.24 -6.24 16 10 C 0.51 6.49 7.79 -10.98 -0.09 6.41 16 11 O -0.52 -9.55 15.70 5.56 0.09 -9.47 16 12 C -0.08 -0.92 5.83 -29.03 -0.17 -1.09 16 13 C -0.17 -2.90 4.38 -104.58 -0.46 -3.35 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 15 C -0.19 -4.20 9.99 -39.39 -0.39 -4.60 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.18 -5.24 9.76 0.02 0.00 -5.24 16 18 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.77 13.67 55.48 0.76 -25.02 16 22 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 27 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.12 0.37 7.75 -51.92 -0.40 -0.03 16 35 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.11 0.21 8.14 -51.92 -0.42 -0.22 16 37 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.40 1.70 8.60 -40.82 -0.35 1.35 16 39 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 43 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 45 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -41.03 394.70 -8.31 -49.33 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.76 Total: 2.77 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -0.95 Total: -21.23 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.51 Total: -31.26 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.55 Total: -25.50 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.48 Total: 4.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -41.03 -8.31 -49.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748367596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.501 kcal (2) G-P(sol) polarization free energy of solvation -41.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds