Wall clock time and date at job start Tue Mar 31 2020 23:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.52995 * 109.47435 * 120.00005 * 2 1 3 5 5 C 1.53000 * 109.47514 * 185.00014 * 4 2 1 6 6 S 1.81401 * 109.47357 * 180.02562 * 5 4 2 7 7 C 1.81395 * 102.99828 * 180.02562 * 6 5 4 8 8 O 1.42096 * 109.46658 * 296.39145 * 6 5 4 9 9 N 1.46497 * 109.47212 * 240.00464 * 2 1 3 10 10 C 1.34779 * 119.99988 * 84.99736 * 9 2 1 11 11 O 1.21280 * 120.00032 * 0.02562 * 10 9 2 12 12 C 1.50701 * 120.00114 * 179.97438 * 10 9 2 13 13 C 1.50699 * 109.47440 * 180.02562 * 12 10 9 14 14 C 1.38301 * 119.92969 * 269.73067 * 13 12 10 15 15 C 1.38103 * 120.06923 * 179.72527 * 14 13 12 16 16 C 1.38885 * 119.92417 * 0.56413 * 15 14 13 17 17 O 1.35754 * 120.06226 * 179.68292 * 16 15 14 18 18 C 1.34834 * 116.99529 * 174.48858 * 17 16 15 19 19 H 1.07995 * 120.00045 * 5.05241 * 18 17 16 20 20 C 1.38659 * 119.99942 * 185.06218 * 18 17 16 21 21 N 1.31561 * 119.99612 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47354 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47155 * 119.99736 * 22 20 18 25 25 H 1.48504 * 109.46522 * 239.99212 * 22 20 18 26 26 C 1.38868 * 119.86683 * 359.70612 * 16 15 14 27 27 C 1.38102 * 119.93027 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47165 * 299.99418 * 1 2 3 29 29 H 1.09000 * 109.47602 * 60.00157 * 1 2 3 30 30 H 1.09007 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47045 * 65.00290 * 4 2 1 32 32 H 1.09001 * 109.47326 * 305.00973 * 4 2 1 33 33 H 1.09002 * 109.46316 * 59.99980 * 5 4 2 34 34 H 1.09001 * 109.47086 * 300.00716 * 5 4 2 35 35 H 1.09002 * 109.47014 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47435 * 300.00008 * 7 6 5 37 37 H 1.09007 * 109.47380 * 60.00187 * 7 6 5 38 38 H 0.96995 * 120.00125 * 264.99727 * 9 2 1 39 39 H 1.09000 * 109.46998 * 299.99987 * 12 10 9 40 40 H 1.09004 * 109.47060 * 59.99901 * 12 10 9 41 41 H 1.07994 * 119.96626 * 359.96993 * 14 13 12 42 42 H 1.07997 * 120.03684 * 180.27239 * 15 14 13 43 43 H 0.96996 * 119.99213 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.03749 * 179.97438 * 26 16 15 45 45 H 1.08003 * 119.96899 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 16 4.1697 -1.4690 2.7944 7 6 5.9656 -1.2337 2.6966 8 8 3.6696 -0.8187 3.9546 9 7 2.0183 -0.6905 -1.1962 10 6 2.1470 -0.0180 -2.3571 11 8 1.8590 1.1588 -2.4114 12 6 2.6499 -0.7282 -3.5875 13 6 2.7011 0.2403 -4.7410 14 6 1.6008 0.3902 -5.5655 15 6 1.6426 1.2811 -6.6199 16 6 2.7951 2.0182 -6.8589 17 8 2.8414 2.8900 -7.8985 18 6 3.9459 3.6559 -8.0063 19 1 4.7767 3.5030 -7.3335 20 6 4.0148 4.6399 -8.9808 21 7 3.0027 4.8258 -9.8005 22 14 5.5452 5.7005 -9.1305 23 1 6.5323 5.2936 -8.0985 24 1 6.1388 5.5251 -10.4803 25 1 5.1806 7.1262 -8.9315 26 6 3.9001 1.8614 -6.0326 27 6 3.8502 0.9729 -4.9765 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.7517 -1.7716 1.2055 32 1 1.6053 -0.2618 2.1369 33 1 3.8531 0.4371 1.3573 34 1 3.9995 -1.0727 0.4258 35 1 6.4421 -1.7153 3.5505 36 1 6.3405 -1.6770 1.7741 37 1 6.1935 -0.1678 2.7064 38 1 2.2491 -1.6316 -1.1527 39 1 3.6493 -1.1199 -3.3980 40 1 1.9777 -1.5506 -3.8327 41 1 0.7068 -0.1871 -5.3821 42 1 0.7816 1.4009 -7.2607 43 1 3.0511 5.5140 -10.4824 44 1 4.7979 2.4329 -6.2162 45 1 4.7091 0.8507 -4.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748367596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:58 Heat of formation + Delta-G solvation = -118.820476 kcal Electronic energy + Delta-G solvation = -26022.614950 eV Core-core repulsion = 22131.012842 eV Total energy + Delta-G solvation = -3891.602108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10123 -40.43535 -38.35860 -37.27837 -36.78392 -34.39964 -33.56574 -32.51563 -31.75713 -30.81163 -29.70504 -28.13115 -26.96717 -24.96602 -23.62169 -22.91040 -21.74671 -21.25061 -19.83740 -18.85107 -18.34869 -17.95104 -17.38189 -16.58454 -16.37523 -16.24476 -16.04618 -15.80192 -15.66234 -15.51609 -15.48427 -15.07540 -14.65657 -14.53770 -14.39372 -14.26611 -14.09394 -13.77394 -13.59242 -13.51868 -13.16521 -12.97528 -12.83195 -12.71980 -12.54429 -12.46719 -12.25312 -12.23226 -12.12835 -12.09047 -11.88160 -11.16959 -11.05384 -10.86964 -10.68722 -9.98681 -9.74504 -9.18653 -8.87840 -8.48214 -6.16127 0.63149 0.68553 0.69985 1.32478 1.41418 1.51348 1.79269 1.84254 2.16410 2.34659 2.86264 2.90805 3.19157 3.53928 3.77449 3.91430 3.95452 4.05730 4.08447 4.20444 4.28384 4.32122 4.40195 4.51557 4.51966 4.57306 4.62135 4.73929 4.78722 4.80857 4.83489 4.93282 5.08707 5.13556 5.15594 5.16893 5.19445 5.32837 5.33018 5.58786 5.66867 5.73031 5.80575 6.02942 6.26230 6.79348 6.96552 7.51686 7.78833 8.75635 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.001982 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.520543 B =14122.168109 C =15121.871037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.046 0.954 4 C -0.103 4.103 5 C -0.450 4.450 6 S 1.307 4.693 7 C -0.493 4.493 8 O -0.932 6.932 9 N -0.707 5.707 10 C 0.509 3.491 11 O -0.587 6.587 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.059 4.059 15 C -0.208 4.208 16 C 0.109 3.891 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.264 1.264 25 H -0.270 1.270 26 C -0.246 4.246 27 C -0.061 4.061 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.059 0.941 38 H 0.423 0.577 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.115 0.885 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -23.898 24.271 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.064 0.936 4 C -0.141 4.141 5 C -0.587 4.587 6 S 1.508 4.492 7 C -0.651 4.651 8 O -0.928 6.928 9 N -0.362 5.362 10 C 0.296 3.704 11 O -0.466 6.466 12 C -0.116 4.116 13 C -0.144 4.144 14 C -0.077 4.077 15 C -0.227 4.227 16 C 0.059 3.941 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.117 0.883 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.189 1.189 25 H -0.195 1.195 26 C -0.265 4.265 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.078 0.922 38 H 0.262 0.738 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.649 -23.368 24.640 34.062 hybrid contribution 1.057 3.362 -0.544 3.566 sum 3.706 -20.006 24.096 31.537 Atomic orbital electron populations 1.22163 0.95120 1.03435 1.01399 1.20802 0.93973 0.96244 0.84905 0.93565 1.21491 0.92396 1.04064 0.96194 1.27755 1.03233 1.09509 1.18208 1.69450 0.84645 1.13412 0.81742 1.27676 1.20442 1.06319 1.10695 1.93009 1.76120 1.78886 1.44762 1.45862 1.67334 1.14809 1.08191 1.21236 0.76678 0.86861 0.85581 1.90766 1.51268 1.18983 1.85615 1.20565 1.06122 0.96985 0.87963 1.19325 0.93989 1.02211 0.98892 1.20903 0.98471 0.95829 0.92460 1.20459 0.96484 1.02646 1.03151 1.19953 0.95202 0.90850 0.88062 1.83938 1.42013 1.46497 1.41783 1.21847 0.93895 1.14349 1.18755 0.88318 1.26626 1.02780 0.98170 0.94738 1.70199 1.33024 1.33569 1.19254 0.84512 0.75379 0.76950 0.79221 1.17563 1.18926 1.19521 1.21231 0.99048 1.05675 1.00525 1.20950 0.98539 0.93568 0.94836 0.91620 0.94866 0.89593 0.85675 0.91529 0.92294 0.83144 0.87042 0.83493 0.92210 0.73845 0.84776 0.84817 0.83510 0.87203 0.91863 0.86715 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.15 2.19 2.57 44.99 0.12 2.31 16 3 H 0.05 1.09 7.58 -2.38 -0.02 1.07 16 4 C -0.10 -0.85 4.76 30.59 0.15 -0.70 16 5 C -0.45 -3.27 5.81 71.98 0.42 -2.85 16 6 S 1.31 8.20 13.80 -56.49 -0.78 7.42 16 7 C -0.49 -2.70 10.74 113.37 1.22 -1.48 16 8 O -0.93 -21.59 18.14 -148.98 -2.70 -24.29 16 9 N -0.71 -8.21 4.53 -442.54 -2.00 -10.21 16 10 C 0.51 10.92 7.79 87.66 0.68 11.60 16 11 O -0.59 -20.76 15.70 -3.03 -0.05 -20.81 16 12 C -0.08 -1.29 5.83 29.10 0.17 -1.12 16 13 C -0.14 -4.37 4.38 -19.83 -0.09 -4.46 16 14 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 15 C -0.21 -9.41 9.99 22.39 0.22 -9.19 16 16 C 0.11 5.77 6.65 22.58 0.15 5.92 16 17 O -0.24 -14.86 9.76 -22.83 -0.22 -15.09 16 18 C -0.41 -25.07 9.49 67.92 0.64 -24.43 16 19 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 20 C -0.03 -1.54 5.49 84.83 0.47 -1.08 16 21 N -0.92 -58.41 13.67 21.62 0.30 -58.12 16 22 Si 1.02 44.46 29.55 68.60 2.03 46.48 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C -0.25 -11.30 9.17 22.39 0.21 -11.10 16 27 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.13 -0.04 8.14 -2.38 -0.02 -0.06 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.15 0.10 7.75 -2.39 -0.02 0.08 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.42 0.65 8.60 -92.71 -0.80 -0.14 16 39 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.13 1.31 8.08 -2.38 -0.02 1.29 16 41 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 45 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -102.29 394.70 2.23 -100.06 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.20 Total: 16.71 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 5.47 Total: -42.16 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.71 Total: -68.33 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -2.97 Total: -60.19 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -0.78 Total: 7.42 kcal Total: -102.29 2.23 -100.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748367596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.760 kcal (2) G-P(sol) polarization free energy of solvation -102.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds