Wall clock time and date at job start Wed Apr 1 2020 00:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46814 * 2 1 4 4 C 1.53003 * 109.46869 * 240.00020 * 2 1 3 5 5 C 1.53000 * 109.46635 * 175.00036 * 4 2 1 6 6 S 1.81400 * 109.46900 * 180.02562 * 5 4 2 7 7 C 1.81403 * 103.00089 * 180.02562 * 6 5 4 8 8 O 1.42108 * 109.46805 * 296.38444 * 6 5 4 9 9 N 1.46498 * 109.47187 * 119.99941 * 2 1 3 10 10 C 1.34773 * 119.99857 * 275.00553 * 9 2 1 11 11 O 1.21282 * 120.00258 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99855 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.38295 * 119.93466 * 269.73147 * 13 12 10 15 15 C 1.38100 * 120.07111 * 179.72756 * 14 13 12 16 16 C 1.38878 * 119.92709 * 0.56348 * 15 14 13 17 17 O 1.35752 * 120.06963 * 179.68513 * 16 15 14 18 18 C 1.34830 * 117.00104 * 174.48209 * 17 16 15 19 19 H 1.07999 * 120.00219 * 5.06638 * 18 17 16 20 20 C 1.38656 * 120.00128 * 185.05705 * 18 17 16 21 21 N 1.31562 * 119.99657 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47278 * 59.99623 * 22 20 18 24 24 H 1.48498 * 109.47165 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46788 * 299.99727 * 22 20 18 26 26 C 1.38877 * 119.86369 * 359.70407 * 16 15 14 27 27 C 1.38104 * 119.93087 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47378 * 60.00112 * 1 2 3 30 30 H 1.08998 * 109.47132 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.47040 * 295.00040 * 4 2 1 32 32 H 1.08995 * 109.47107 * 55.00087 * 4 2 1 33 33 H 1.09000 * 109.47409 * 299.99778 * 5 4 2 34 34 H 1.08995 * 109.47332 * 60.00188 * 5 4 2 35 35 H 1.08995 * 109.46896 * 59.99820 * 7 6 5 36 36 H 1.08999 * 109.47156 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46836 * 299.99869 * 7 6 5 38 38 H 0.96999 * 120.00166 * 94.99535 * 9 2 1 39 39 H 1.09001 * 109.47002 * 299.99548 * 12 10 9 40 40 H 1.09006 * 109.47300 * 59.99672 * 12 10 9 41 41 H 1.08006 * 119.96468 * 359.97412 * 14 13 12 42 42 H 1.08003 * 120.03802 * 180.27038 * 15 14 13 43 43 H 0.97000 * 119.99235 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.03941 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.96661 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 16 4.1694 -1.4677 -2.7952 7 6 5.9656 -1.2340 -2.6967 8 8 3.8667 -2.8529 -2.6998 9 7 2.0184 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3571 11 8 1.8589 1.1586 2.4115 12 6 2.6488 -0.7288 3.5877 13 6 2.7001 0.2397 4.7412 14 6 3.8513 0.9678 4.9803 15 6 3.8995 1.8602 6.0332 16 6 2.7943 2.0175 6.8593 17 8 2.8407 2.8892 7.8989 18 6 1.6989 3.0783 8.5906 19 1 0.8245 2.4874 8.3614 20 6 1.6474 4.0312 9.5965 21 7 2.7126 4.7512 9.8756 22 14 0.0658 4.2927 10.5554 23 1 -0.3138 3.0297 11.2379 24 1 0.2709 5.3603 11.5670 25 1 -1.0172 4.6964 9.6230 26 6 1.6416 1.2808 6.6199 27 6 1.5977 0.3941 5.5620 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 6.3398 -1.6786 -1.7746 36 1 6.4420 -1.7149 -3.5510 37 1 6.1943 -0.1683 -2.7051 38 1 2.2490 -1.6317 1.1526 39 1 1.9759 -1.5506 3.8325 40 1 3.6480 -1.1213 3.3986 41 1 4.7123 0.8412 4.3406 42 1 4.7973 2.4317 6.2168 43 1 2.6764 5.4181 10.5790 44 1 0.7806 1.4006 7.2607 45 1 0.7017 -0.1794 5.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748368207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:06 Heat of formation + Delta-G solvation = -86.508732 kcal Electronic energy + Delta-G solvation = -26037.480652 eV Core-core repulsion = 22147.279686 eV Total energy + Delta-G solvation = -3890.200966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.94775 -38.83823 -36.93546 -36.16772 -36.05370 -32.74627 -32.35080 -31.29531 -30.13889 -30.01408 -29.33953 -26.60863 -25.11950 -24.33886 -21.94718 -21.80188 -20.75055 -20.07403 -17.94347 -17.90361 -17.10118 -16.93506 -16.49853 -15.66346 -15.43649 -15.25472 -15.02471 -14.59033 -14.36313 -14.31242 -13.97171 -13.80353 -13.61450 -13.51308 -13.39294 -13.22040 -12.97441 -12.67664 -12.58474 -12.35641 -12.26836 -11.96619 -11.79348 -11.70725 -11.48317 -11.23188 -11.19430 -10.80710 -10.72061 -10.60654 -10.46819 -10.40866 -9.65829 -9.29153 -9.13496 -8.78011 -8.69396 -8.11164 -7.12268 -6.40961 -3.99523 1.06859 2.16176 2.28598 2.30597 2.80302 3.14781 3.15988 3.19518 3.24001 3.34507 4.00305 4.33273 4.46601 4.51463 4.60724 4.66530 4.77914 5.01546 5.08898 5.12466 5.16455 5.20464 5.29560 5.32915 5.35241 5.36920 5.45977 5.50227 5.60504 5.69009 5.76673 5.85734 5.88544 6.03231 6.25353 6.44444 6.45639 6.74199 6.95461 7.09240 7.27660 7.41114 7.47220 7.50668 7.88048 8.04311 8.36208 9.04662 9.75409 10.77135 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.001866 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.468448 B =14999.788541 C =15587.168751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.106 4.106 5 C -0.448 4.448 6 S 1.239 4.761 7 C -0.489 4.489 8 O -0.854 6.854 9 N -0.737 5.737 10 C 0.510 3.490 11 O -0.519 6.519 12 C -0.081 4.081 13 C -0.169 4.169 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.057 4.057 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.395 0.605 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -11.345 -26.936 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.145 4.145 5 C -0.585 4.585 6 S 1.438 4.562 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.391 5.391 10 C 0.296 3.704 11 O -0.393 6.393 12 C -0.121 4.121 13 C -0.170 4.170 14 C -0.079 4.079 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.251 4.251 27 C -0.075 4.075 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.430 -10.632 -27.308 29.308 hybrid contribution 0.243 -1.190 2.380 2.672 sum 0.673 -11.822 -24.928 27.598 Atomic orbital electron populations 1.22196 0.95213 1.02093 1.02876 1.20900 0.93910 0.97621 0.83579 0.89126 1.21500 0.92255 1.01960 0.98825 1.27700 1.03056 1.11193 1.16554 1.70442 0.87715 0.94568 1.03498 1.27629 1.21279 1.08515 1.07281 1.93140 1.78688 1.30732 1.82365 1.46215 1.69146 1.13826 1.09904 1.21025 0.77391 0.87704 0.84244 1.90740 1.48099 1.15882 1.84557 1.20421 1.02328 0.97969 0.91419 1.18621 0.95842 1.03754 0.98777 1.20378 0.96503 0.94986 0.95989 1.20145 0.98563 1.04289 0.98060 1.19374 0.93218 0.89527 0.87622 1.83975 1.35402 1.52849 1.35948 1.21277 0.89184 1.21121 1.15140 0.89158 1.25287 0.98986 0.95168 0.97126 1.70036 1.28306 1.21496 1.30045 0.85783 0.80155 0.78465 0.79038 1.19538 1.20295 1.19508 1.21103 0.99782 1.02170 1.02064 1.20505 0.96194 0.96778 0.94018 0.92589 0.91590 0.91688 0.90892 0.89182 0.86198 0.89374 0.90090 0.87653 0.86845 0.77096 0.89106 0.89257 0.87536 0.86576 0.92027 0.85595 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.25 2.57 -67.93 -0.17 1.08 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.11 -0.60 4.76 -26.73 -0.13 -0.73 16 5 C -0.45 -2.26 5.81 37.16 0.22 -2.05 16 6 S 1.24 5.34 13.80 -107.50 -1.48 3.85 16 7 C -0.49 -1.98 10.74 101.05 1.09 -0.90 16 8 O -0.85 -9.76 18.14 -35.23 -0.64 -10.40 16 9 N -0.74 -7.20 4.53 -53.81 -0.24 -7.45 16 10 C 0.51 7.02 7.79 -10.99 -0.09 6.94 16 11 O -0.52 -9.63 15.70 5.56 0.09 -9.54 16 12 C -0.08 -1.06 5.83 -29.03 -0.17 -1.23 16 13 C -0.17 -3.02 4.38 -104.58 -0.46 -3.47 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.26 9.99 -39.40 -0.39 -4.66 16 16 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 18 C -0.39 -11.24 9.49 30.89 0.29 -10.95 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 22 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 26 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.12 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.09 0.59 7.75 -51.93 -0.40 0.19 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.40 2.99 8.60 -40.82 -0.35 2.64 16 39 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 40 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 45 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -40.26 394.70 -8.31 -48.57 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.76 Total: 4.41 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.95 Total: -21.04 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.51 Total: -32.52 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.55 Total: -25.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.48 Total: 3.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.26 -8.31 -48.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748368207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.940 kcal (2) G-P(sol) polarization free energy of solvation -40.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds