Wall clock time and date at job start Wed Apr 1 2020 00:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46814 * 2 1 4 4 C 1.53003 * 109.46869 * 240.00020 * 2 1 3 5 5 C 1.53000 * 109.46635 * 175.00036 * 4 2 1 6 6 S 1.81400 * 109.46900 * 180.02562 * 5 4 2 7 7 C 1.81403 * 103.00089 * 180.02562 * 6 5 4 8 8 O 1.42108 * 109.46805 * 296.38444 * 6 5 4 9 9 N 1.46498 * 109.47187 * 119.99941 * 2 1 3 10 10 C 1.34773 * 119.99857 * 275.00553 * 9 2 1 11 11 O 1.21282 * 120.00258 * 359.97438 * 10 9 2 12 12 C 1.50702 * 119.99855 * 179.97438 * 10 9 2 13 13 C 1.50702 * 109.47254 * 179.97438 * 12 10 9 14 14 C 1.38295 * 119.93466 * 269.73147 * 13 12 10 15 15 C 1.38100 * 120.07111 * 179.72756 * 14 13 12 16 16 C 1.38878 * 119.92709 * 0.56348 * 15 14 13 17 17 O 1.35752 * 120.06963 * 179.68513 * 16 15 14 18 18 C 1.34830 * 117.00104 * 174.48209 * 17 16 15 19 19 H 1.07999 * 120.00219 * 5.06638 * 18 17 16 20 20 C 1.38656 * 120.00128 * 185.05705 * 18 17 16 21 21 N 1.31562 * 119.99657 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47278 * 59.99623 * 22 20 18 24 24 H 1.48498 * 109.47165 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46788 * 299.99727 * 22 20 18 26 26 C 1.38877 * 119.86369 * 359.70407 * 16 15 14 27 27 C 1.38104 * 119.93087 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46811 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47378 * 60.00112 * 1 2 3 30 30 H 1.08998 * 109.47132 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.47040 * 295.00040 * 4 2 1 32 32 H 1.08995 * 109.47107 * 55.00087 * 4 2 1 33 33 H 1.09000 * 109.47409 * 299.99778 * 5 4 2 34 34 H 1.08995 * 109.47332 * 60.00188 * 5 4 2 35 35 H 1.08995 * 109.46896 * 59.99820 * 7 6 5 36 36 H 1.08999 * 109.47156 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.46836 * 299.99869 * 7 6 5 38 38 H 0.96999 * 120.00166 * 94.99535 * 9 2 1 39 39 H 1.09001 * 109.47002 * 299.99548 * 12 10 9 40 40 H 1.09006 * 109.47300 * 59.99672 * 12 10 9 41 41 H 1.08006 * 119.96468 * 359.97412 * 14 13 12 42 42 H 1.08003 * 120.03802 * 180.27038 * 15 14 13 43 43 H 0.97000 * 119.99235 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.03941 * 179.97438 * 26 16 15 45 45 H 1.08001 * 119.96661 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 16 4.1694 -1.4677 -2.7952 7 6 5.9656 -1.2340 -2.6967 8 8 3.8667 -2.8529 -2.6998 9 7 2.0184 -0.6906 1.1962 10 6 2.1470 -0.0182 2.3571 11 8 1.8589 1.1586 2.4115 12 6 2.6488 -0.7288 3.5877 13 6 2.7001 0.2397 4.7412 14 6 3.8513 0.9678 4.9803 15 6 3.8995 1.8602 6.0332 16 6 2.7943 2.0175 6.8593 17 8 2.8407 2.8892 7.8989 18 6 1.6989 3.0783 8.5906 19 1 0.8245 2.4874 8.3614 20 6 1.6474 4.0312 9.5965 21 7 2.7126 4.7512 9.8756 22 14 0.0658 4.2927 10.5554 23 1 -0.3138 3.0297 11.2379 24 1 0.2709 5.3603 11.5670 25 1 -1.0172 4.6964 9.6230 26 6 1.6416 1.2808 6.6199 27 6 1.5977 0.3941 5.5620 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 6.3398 -1.6786 -1.7746 36 1 6.4420 -1.7149 -3.5510 37 1 6.1943 -0.1683 -2.7051 38 1 2.2490 -1.6317 1.1526 39 1 1.9759 -1.5506 3.8325 40 1 3.6480 -1.1213 3.3986 41 1 4.7123 0.8412 4.3406 42 1 4.7973 2.4317 6.2168 43 1 2.6764 5.4181 10.5790 44 1 0.7806 1.4006 7.2607 45 1 0.7017 -0.1794 5.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748368207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:05 Heat of formation + Delta-G solvation = -116.916421 kcal Electronic energy + Delta-G solvation = -26038.799228 eV Core-core repulsion = 22147.279686 eV Total energy + Delta-G solvation = -3891.519542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15537 -40.47364 -38.39177 -37.28607 -36.73539 -34.41342 -33.60171 -32.56244 -31.80240 -30.80422 -29.69211 -28.17628 -26.99020 -24.95126 -23.65887 -22.94412 -21.73860 -21.30145 -19.85923 -18.87017 -18.33775 -18.04372 -17.36411 -16.65656 -16.42349 -16.15880 -16.06018 -15.82059 -15.80508 -15.52274 -15.43232 -15.01444 -14.74656 -14.65989 -14.40292 -14.17419 -14.11961 -13.78224 -13.59108 -13.50628 -13.11175 -12.95922 -12.83886 -12.74376 -12.53332 -12.46746 -12.34236 -12.26816 -12.18631 -12.14288 -11.81860 -11.20247 -11.04631 -10.88385 -10.71969 -10.03062 -9.78844 -9.14194 -8.91913 -8.48264 -6.16589 0.58933 0.65287 0.69598 1.32827 1.44044 1.49615 1.74394 1.81407 2.16778 2.29953 2.84133 2.92342 3.16107 3.50614 3.80311 3.85267 3.94276 4.02469 4.05605 4.15958 4.23970 4.30022 4.43688 4.45698 4.53014 4.55279 4.57293 4.65812 4.75334 4.78033 4.84546 4.91401 5.05323 5.11939 5.13586 5.17388 5.21796 5.28114 5.34964 5.54024 5.63604 5.69668 5.75561 6.01398 6.20419 6.62905 6.95945 7.37617 7.76847 8.74869 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.001866 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.468448 B =14999.788541 C =15587.168751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.075 0.925 4 C -0.103 4.103 5 C -0.451 4.451 6 S 1.299 4.701 7 C -0.492 4.492 8 O -0.925 6.925 9 N -0.719 5.719 10 C 0.512 3.488 11 O -0.575 6.575 12 C -0.082 4.082 13 C -0.144 4.144 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.112 3.888 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.061 4.061 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.410 0.590 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.118 0.882 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -13.361 -29.900 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.142 4.142 5 C -0.588 4.588 6 S 1.499 4.501 7 C -0.650 4.650 8 O -0.921 6.921 9 N -0.372 5.372 10 C 0.299 3.701 11 O -0.454 6.454 12 C -0.121 4.121 13 C -0.145 4.145 14 C -0.076 4.076 15 C -0.224 4.224 16 C 0.062 3.938 17 O -0.139 6.139 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.180 1.180 24 H -0.194 1.194 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.246 0.754 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.163 0.837 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.262 -12.744 -30.351 32.919 hybrid contribution 0.585 -0.749 2.958 3.107 sum 0.322 -13.493 -27.393 30.537 Atomic orbital electron populations 1.22173 0.95124 1.02502 1.02321 1.21030 0.93999 0.97174 0.84128 0.90689 1.21520 0.92710 1.01501 0.98479 1.27729 1.02682 1.12381 1.15999 1.69698 0.87095 0.91394 1.01884 1.27659 1.20344 1.10398 1.06642 1.93011 1.80616 1.34735 1.83762 1.46090 1.67463 1.14394 1.09252 1.21037 0.76808 0.86949 0.85276 1.90745 1.50949 1.18216 1.85474 1.20543 1.05425 0.97205 0.88945 1.19227 0.94230 1.02330 0.98743 1.20845 0.98390 0.93485 0.94866 1.20434 0.97817 1.05342 0.98838 1.19927 0.95336 0.90340 0.88217 1.83936 1.36218 1.55505 1.38268 1.21775 0.89674 1.21900 1.15794 0.88334 1.26626 1.03120 0.94445 0.97977 1.70185 1.31120 1.23005 1.31561 0.84640 0.75055 0.79003 0.77442 1.17988 1.19368 1.18405 1.21224 0.98812 1.02961 1.03267 1.20914 0.98120 0.96021 0.92884 0.91635 0.89484 0.94967 0.91394 0.86010 0.84138 0.90807 0.91746 0.87155 0.84069 0.75424 0.85906 0.85718 0.83688 0.86892 0.91803 0.86461 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.07 2.57 44.99 0.12 2.18 16 3 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 4 C -0.10 -0.83 4.76 30.60 0.15 -0.68 16 5 C -0.45 -3.10 5.81 71.98 0.42 -2.69 16 6 S 1.30 7.99 13.80 -56.49 -0.78 7.21 16 7 C -0.49 -2.67 10.74 113.37 1.22 -1.45 16 8 O -0.93 -19.92 18.14 -148.98 -2.70 -22.62 16 9 N -0.72 -11.75 4.53 -442.53 -2.00 -13.76 16 10 C 0.51 12.54 7.79 87.66 0.68 13.22 16 11 O -0.58 -20.49 15.70 -3.03 -0.05 -20.53 16 12 C -0.08 -1.75 5.83 29.10 0.17 -1.58 16 13 C -0.14 -4.76 4.38 -19.84 -0.09 -4.85 16 14 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 15 C -0.21 -9.37 9.99 22.39 0.22 -9.15 16 16 C 0.11 5.95 6.65 22.58 0.15 6.10 16 17 O -0.23 -14.69 9.76 -22.76 -0.22 -14.91 16 18 C -0.42 -25.27 9.49 67.92 0.64 -24.63 16 19 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 20 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 21 N -0.92 -58.12 13.67 21.61 0.30 -57.83 16 22 Si 1.02 44.33 29.55 68.60 2.03 46.36 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.24 -11.43 9.17 22.39 0.21 -11.22 16 27 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.14 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.77 7.75 -2.39 -0.02 0.75 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.41 4.59 8.60 -92.71 -0.80 3.80 16 39 H 0.12 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.12 1.90 8.08 -2.38 -0.02 1.88 16 41 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 45 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -96.01 394.70 2.23 -93.78 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.20 Total: 23.72 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 5.47 Total: -41.41 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.71 Total: -71.58 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -2.97 Total: -58.07 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -0.78 Total: 7.21 kcal Total: -96.01 2.23 -93.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748368207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.136 kcal (2) G-P(sol) polarization free energy of solvation -96.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds